Wall clock time and date at job start Wed Apr 1 2020 01:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47540 * 2 1 4 4 O 1.45207 * 109.47069 * 239.99851 * 2 1 3 5 5 C 1.34781 * 116.99652 * 90.00204 * 4 2 1 6 6 O 1.21518 * 120.00369 * 359.97438 * 5 4 2 7 7 C 1.47315 * 119.99398 * 179.97438 * 5 4 2 8 8 C 1.38928 * 120.46868 * 354.21389 * 7 5 4 9 9 C 1.38880 * 120.66850 * 179.71950 * 8 7 5 10 10 C 1.36386 * 121.27452 * 0.56224 * 9 8 7 11 11 C 1.40401 * 120.00096 * 359.72219 * 10 9 8 12 12 C 1.40463 * 121.94590 * 180.02562 * 11 10 9 13 13 N 1.31282 * 119.88189 * 180.02562 * 12 11 10 14 14 C 1.32548 * 122.73188 * 359.97438 * 13 12 11 15 15 C 1.36343 * 121.81264 * 359.97438 * 14 13 12 16 16 C 1.40265 * 118.70872 * 0.02680 * 15 14 13 17 17 C 1.50699 * 109.47251 * 119.99756 * 2 1 3 18 18 O 1.21280 * 119.99768 * 114.99776 * 17 2 1 19 19 N 1.34775 * 120.00150 * 295.00308 * 17 2 1 20 20 C 1.46499 * 120.00060 * 359.97438 * 19 17 2 21 21 C 1.46498 * 120.00163 * 179.97438 * 19 17 2 22 22 C 1.50705 * 109.47180 * 89.99815 * 21 19 17 23 23 H 1.08001 * 119.99731 * 359.97438 * 22 21 19 24 24 C 1.37877 * 120.00238 * 180.02562 * 22 21 19 25 25 N 1.31517 * 120.00003 * 179.97438 * 24 22 21 26 26 Si 1.86797 * 119.99727 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47256 * 90.00236 * 26 24 22 28 28 H 1.48503 * 109.46787 * 209.99945 * 26 24 22 29 29 H 1.48501 * 109.47432 * 329.99441 * 26 24 22 30 30 H 1.09004 * 109.46948 * 59.99817 * 1 2 3 31 31 H 1.09002 * 109.47433 * 300.00326 * 1 2 3 32 32 H 1.09002 * 109.47540 * 179.97438 * 1 2 3 33 33 H 1.08007 * 119.66176 * 359.97111 * 8 7 5 34 34 H 1.07996 * 119.35546 * 180.25662 * 9 8 7 35 35 H 1.08006 * 119.99574 * 179.69864 * 10 9 8 36 36 H 1.07999 * 120.06111 * 0.02562 * 12 11 10 37 37 H 1.07991 * 119.09428 * 179.97438 * 14 13 12 38 38 H 1.08000 * 120.64618 * 180.02562 * 15 14 13 39 39 H 1.08998 * 109.47163 * 89.99874 * 20 19 17 40 40 H 1.08989 * 109.47209 * 210.00336 * 20 19 17 41 41 H 1.09000 * 109.46759 * 330.00397 * 20 19 17 42 42 H 1.08996 * 109.47632 * 209.99801 * 21 19 17 43 43 H 1.09002 * 109.47451 * 329.99978 * 21 19 17 44 44 H 0.96997 * 119.99679 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0139 -0.6845 -1.1856 5 6 2.2179 0.0671 -2.2856 6 8 1.9969 1.2616 -2.2550 7 6 2.7088 -0.5597 -3.5251 8 6 3.0784 -1.8988 -3.5389 9 6 3.5362 -2.4954 -4.7065 10 6 3.6478 -1.7872 -5.8668 11 6 3.2911 -0.4296 -5.8976 12 6 3.3892 0.3381 -7.0698 13 7 3.0450 1.6049 -7.0527 14 6 2.5988 2.2117 -5.9620 15 6 2.4668 1.5525 -4.7758 16 6 2.8156 0.1952 -4.7169 17 6 2.0323 -0.7103 1.2305 18 8 2.6529 -1.7466 1.1215 19 7 1.7918 -0.1941 2.4520 20 6 1.0426 1.0579 2.5836 21 6 2.2797 -0.8850 3.6482 22 6 3.6614 -0.3877 3.9871 23 1 4.1294 0.3672 3.3726 24 6 4.3284 -0.8971 5.0810 25 7 5.5344 -0.4634 5.3765 26 14 3.5197 -2.2042 6.1425 27 1 3.8635 -3.5502 5.6181 28 1 4.0068 -2.0781 7.5398 29 1 2.0460 -2.0232 6.1139 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 3.0050 -2.4829 -2.6334 34 1 3.8139 -3.5390 -4.6942 35 1 4.0109 -2.2707 -6.7617 36 1 3.7472 -0.1129 -7.9835 37 1 2.3325 3.2569 -6.0143 38 1 2.1009 2.0654 -3.8987 39 1 -0.0215 0.8373 2.6678 40 1 1.3754 1.5884 3.4756 41 1 1.2164 1.6793 1.7052 42 1 1.6072 -0.6859 4.4825 43 1 2.3161 -1.9578 3.4588 44 1 6.0037 -0.8221 6.1458 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750364708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:24:51 Heat of formation + Delta-G solvation = -67.959098 kcal Electronic energy + Delta-G solvation = -29028.810209 eV Core-core repulsion = 24911.232275 eV Total energy + Delta-G solvation = -4117.577934 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.37814 -41.52168 -40.50734 -38.32749 -37.78743 -36.78458 -34.88818 -34.08435 -33.23414 -32.26694 -30.96284 -30.15633 -27.74905 -26.41566 -25.66515 -24.98728 -24.47380 -23.66954 -22.05076 -20.49584 -19.62698 -19.17303 -18.90087 -18.29832 -17.93396 -17.45376 -17.40888 -17.20730 -16.84845 -16.55144 -15.90386 -15.75335 -15.31334 -15.26677 -14.91142 -14.74793 -14.70053 -14.42924 -14.25124 -13.78490 -13.71070 -13.63676 -13.44121 -13.20709 -13.07370 -13.01352 -12.88502 -12.81078 -12.65697 -12.43416 -12.06799 -11.98998 -11.77130 -11.49776 -11.28281 -10.85492 -10.73246 -10.46580 -10.23804 -9.53711 -9.24679 -8.36208 -6.42798 -1.06089 -0.21092 0.41251 1.10227 1.33250 1.35528 1.37408 1.45897 1.53336 2.04253 2.25730 2.30023 2.98120 2.99292 3.30078 3.32975 3.47023 3.56726 3.66187 3.69792 3.78721 3.81428 3.84918 4.10794 4.26096 4.33652 4.38036 4.52215 4.56672 4.62571 4.68374 4.72158 4.76199 4.83380 4.87058 4.88957 4.99161 5.05862 5.16934 5.18815 5.30350 5.40928 5.48366 5.61863 5.69040 6.18045 6.40356 6.52041 6.58862 6.91910 7.10548 7.24717 8.80980 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.018387 B = 0.002468 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.431756 B =11342.416785 C =11858.547087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.078 3.922 3 H 0.111 0.889 4 O -0.336 6.336 5 C 0.510 3.490 6 O -0.519 6.519 7 C -0.163 4.163 8 C -0.015 4.015 9 C -0.143 4.143 10 C -0.018 4.018 11 C -0.142 4.142 12 C 0.162 3.838 13 N -0.515 5.515 14 C 0.084 3.916 15 C -0.191 4.191 16 C 0.004 3.996 17 C 0.503 3.497 18 O -0.573 6.573 19 N -0.596 5.596 20 C 0.066 3.934 21 C 0.224 3.776 22 C -0.542 4.542 23 H 0.024 0.976 24 C 0.010 3.990 25 N -0.946 5.946 26 Si 0.951 3.049 27 H -0.276 1.276 28 H -0.275 1.275 29 H -0.232 1.232 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.072 0.928 33 H 0.141 0.859 34 H 0.173 0.827 35 H 0.191 0.809 36 H 0.210 0.790 37 H 0.171 0.829 38 H 0.157 0.843 39 H 0.095 0.905 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.062 0.938 43 H 0.024 0.976 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.739 -1.214 -24.146 26.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.020 3.980 3 H 0.129 0.871 4 O -0.252 6.252 5 C 0.357 3.643 6 O -0.411 6.411 7 C -0.164 4.164 8 C -0.034 4.034 9 C -0.161 4.161 10 C -0.037 4.037 11 C -0.144 4.144 12 C -0.009 4.009 13 N -0.223 5.223 14 C -0.059 4.059 15 C -0.210 4.210 16 C -0.002 4.002 17 C 0.290 3.710 18 O -0.453 6.453 19 N -0.328 5.328 20 C -0.075 4.075 21 C 0.102 3.898 22 C -0.580 4.580 23 H 0.043 0.957 24 C -0.188 4.188 25 N -0.586 5.586 26 Si 0.773 3.227 27 H -0.201 1.201 28 H -0.201 1.201 29 H -0.155 1.155 30 H 0.103 0.897 31 H 0.131 0.869 32 H 0.091 0.909 33 H 0.159 0.841 34 H 0.190 0.810 35 H 0.208 0.792 36 H 0.226 0.774 37 H 0.188 0.812 38 H 0.174 0.826 39 H 0.114 0.886 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.042 0.958 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.368 -0.763 -24.685 27.187 hybrid contribution 0.392 -0.450 1.991 2.078 sum -10.976 -1.213 -22.694 25.238 Atomic orbital electron populations 1.22296 0.88731 1.04720 1.05976 1.22589 0.98166 0.96617 0.80637 0.87100 1.86649 1.77130 1.41596 1.19784 1.21431 0.73873 0.84961 0.83994 1.90626 1.50190 1.16282 1.83979 1.18913 1.11268 0.96062 0.90205 1.22049 0.88735 0.92238 1.00418 1.21326 1.00683 1.02813 0.91276 1.21841 0.91079 0.90691 1.00109 1.19308 1.03833 0.97075 0.94156 1.23959 0.91200 0.88491 0.97265 1.67528 1.12024 1.12373 1.30368 1.22606 0.94631 1.01132 0.87499 1.22771 1.02093 0.94569 1.01608 1.18088 0.95720 0.94106 0.92262 1.20558 0.79935 0.85447 0.85096 1.90656 1.41876 1.26055 1.86701 1.47805 1.54215 1.25456 1.05296 1.22249 0.96835 0.84374 1.04090 1.19446 0.93612 0.93047 0.83654 1.21549 1.01415 1.23298 1.11742 0.95714 1.25908 0.95199 0.98876 0.98844 1.70060 1.14258 1.45191 1.29107 0.85668 0.80841 0.78557 0.77601 1.20117 1.20058 1.15524 0.89703 0.86949 0.90860 0.84115 0.81005 0.79222 0.77382 0.81202 0.82599 0.88632 0.90639 0.90004 0.92048 0.95826 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.64 9.28 71.98 0.67 -2.97 16 2 C 0.08 2.52 2.17 29.85 0.06 2.58 16 3 H 0.11 3.50 6.15 -2.39 -0.01 3.49 16 4 O -0.34 -11.44 8.69 -50.54 -0.44 -11.88 16 5 C 0.51 16.02 7.83 70.21 0.55 16.57 16 6 O -0.52 -17.00 12.75 19.77 0.25 -16.75 16 7 C -0.16 -4.33 5.90 -19.93 -0.12 -4.45 16 8 C -0.01 -0.32 9.60 22.59 0.22 -0.10 16 9 C -0.14 -1.87 9.92 21.99 0.22 -1.66 16 10 C -0.02 -0.19 9.78 22.36 0.22 0.03 16 11 C -0.14 -2.43 5.74 -21.33 -0.12 -2.55 16 12 C 0.16 2.38 11.05 85.32 0.94 3.32 16 13 N -0.51 -10.41 10.30 -195.40 -2.01 -12.43 16 14 C 0.08 1.79 11.07 84.14 0.93 2.72 16 15 C -0.19 -4.79 9.27 22.32 0.21 -4.58 16 16 C 0.00 0.09 5.77 -21.11 -0.12 -0.03 16 17 C 0.50 21.09 7.10 87.66 0.62 21.71 16 18 O -0.57 -29.62 16.09 15.72 0.25 -29.37 16 19 N -0.60 -23.93 2.86 -851.16 -2.43 -26.36 16 20 C 0.07 1.82 8.92 127.77 1.14 2.96 16 21 C 0.22 10.71 4.23 85.64 0.36 11.07 16 22 C -0.54 -31.91 9.94 25.60 0.25 -31.66 16 23 H 0.02 1.64 8.06 -2.91 -0.02 1.62 16 24 C 0.01 0.57 5.47 84.65 0.46 1.04 16 25 N -0.95 -60.09 13.96 21.45 0.30 -59.79 16 26 Si 0.95 43.76 27.47 68.60 1.88 45.65 16 27 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 28 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 29 H -0.23 -9.38 6.54 99.48 0.65 -8.73 16 30 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.11 2.00 5.12 -2.39 -0.01 1.99 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.14 3.20 7.61 -2.91 -0.02 3.18 16 34 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 35 H 0.19 0.11 8.06 -2.91 -0.02 0.08 16 36 H 0.21 1.05 8.06 -2.91 -0.02 1.03 16 37 H 0.17 2.84 8.06 -2.92 -0.02 2.82 16 38 H 0.16 4.33 5.06 -2.91 -0.01 4.31 16 39 H 0.10 1.85 7.02 -2.39 -0.02 1.83 16 40 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 41 H 0.08 1.93 6.08 -2.39 -0.01 1.91 16 42 H 0.06 2.61 7.13 -2.39 -0.02 2.59 16 43 H 0.02 1.21 6.85 -2.39 -0.02 1.19 16 44 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -86.73 369.87 5.29 -81.44 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.99 Total: 15.48 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: 6.50 Total: 14.01 kcal Atomic # 7 Polarization: -94.43 SS G_CDS: -4.14 Total: -98.58 kcal Atomic # 8 Polarization: -58.06 SS G_CDS: 0.07 Total: -58.00 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.88 Total: 45.65 kcal Total: -86.73 5.29 -81.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750364708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.478 kcal (2) G-P(sol) polarization free energy of solvation -86.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds