Wall clock time and date at job start Wed Apr 1 2020 01:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47503 * 2 1 4 4 C 1.34781 * 119.99615 * 270.00228 * 3 2 1 5 5 O 1.21283 * 119.99763 * 184.65572 * 4 3 2 6 6 C 1.50695 * 120.00048 * 4.65422 * 4 3 2 7 7 S 1.81001 * 109.46743 * 180.02562 * 6 4 3 8 8 C 1.76199 * 99.99891 * 179.97438 * 7 6 4 9 9 H 1.08004 * 120.00207 * 0.02562 * 8 7 6 10 10 C 1.38800 * 120.00231 * 179.97438 * 8 7 6 11 11 N 1.31636 * 120.00003 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00279 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47043 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.46747 * 120.00102 * 12 10 8 15 15 H 1.48500 * 109.47390 * 240.00434 * 12 10 8 16 16 C 1.46498 * 120.00263 * 89.99468 * 3 2 1 17 17 C 1.53944 * 113.74289 * 148.92753 * 16 3 2 18 18 N 1.47813 * 86.03439 * 90.88351 * 17 16 3 19 19 C 1.34780 * 134.46037 * 204.63870 * 18 17 16 20 20 O 1.21285 * 119.99615 * 4.85483 * 19 18 17 21 21 C 1.50697 * 120.00162 * 184.84836 * 19 18 17 22 22 H 1.09003 * 109.87387 * 303.57658 * 21 19 18 23 23 C 1.54098 * 109.87933 * 64.58304 * 21 19 18 24 24 C 1.54811 * 104.18853 * 121.45276 * 23 21 19 25 25 C 1.54997 * 102.09060 * 20.88238 * 24 23 21 26 26 O 1.43741 * 109.88021 * 182.41532 * 21 19 18 27 27 C 1.47584 * 91.05147 * 24.55121 * 18 17 16 28 28 H 1.09004 * 109.46488 * 59.99789 * 1 2 3 29 29 H 1.09000 * 109.47195 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46601 * 300.00327 * 1 2 3 31 31 H 1.08999 * 109.47311 * 239.99816 * 2 1 3 32 32 H 1.09000 * 109.47272 * 119.99764 * 2 1 3 33 33 H 1.08995 * 109.47401 * 299.99824 * 6 4 3 34 34 H 1.08995 * 109.47222 * 60.00845 * 6 4 3 35 35 H 0.96996 * 119.99930 * 179.97438 * 11 10 8 36 36 H 1.09002 * 112.93964 * 17.34396 * 16 3 2 37 37 H 1.08999 * 113.77384 * 205.15086 * 17 16 3 38 38 H 1.08999 * 113.77008 * 336.55344 * 17 16 3 39 39 H 1.09001 * 110.48963 * 240.12906 * 23 21 19 40 40 H 1.09001 * 110.49175 * 2.64659 * 23 21 19 41 41 H 1.08997 * 110.90612 * 139.07645 * 24 23 21 42 42 H 1.08994 * 110.90800 * 262.68636 * 24 23 21 43 43 H 1.09004 * 110.61950 * 81.47343 * 25 24 23 44 44 H 1.09000 * 110.62045 * 204.31727 * 25 24 23 45 45 H 1.08991 * 113.77327 * 221.15210 * 27 18 17 46 46 H 1.09000 * 113.76920 * 89.74594 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0165 -1.1673 5 8 2.7268 3.1287 -1.1691 6 6 1.8932 1.3449 -2.4701 7 16 2.3110 2.4437 -3.8465 8 6 1.8134 1.4365 -5.2039 9 1 1.3947 0.4572 -5.0248 10 6 1.9585 1.9021 -6.5034 11 7 2.4683 3.0959 -6.7218 12 14 1.4303 0.8346 -7.9425 13 1 0.8922 -0.4523 -7.4330 14 1 0.3783 1.5374 -8.7201 15 1 2.6000 0.5704 -8.8184 16 6 2.2626 2.0719 1.2687 17 6 3.4000 3.1070 1.2020 18 7 2.3504 4.0856 0.8477 19 6 2.3379 5.2565 0.1804 20 8 3.3491 5.6613 -0.3530 21 6 1.0674 6.0627 0.0969 22 1 0.2714 5.4561 -0.3351 23 6 0.6571 6.5413 1.5030 24 6 0.6175 8.0842 1.3821 25 6 0.4686 8.2863 -0.1474 26 8 1.2840 7.2344 -0.7070 27 6 1.3217 3.2650 1.5159 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.4565 0.4164 -2.5631 34 1 0.8256 1.1259 -2.4908 35 1 2.5700 3.4211 -7.6299 36 1 2.3388 1.3901 2.1157 37 1 3.8748 3.3008 2.1638 38 1 4.1169 2.9212 0.4022 39 1 -0.3272 6.1538 1.7658 40 1 1.3971 6.2335 2.2418 41 1 -0.2411 8.4941 1.9140 42 1 1.5453 8.5267 1.7444 43 1 -0.5717 8.1680 -0.4508 44 1 0.8446 9.2656 -0.4436 45 1 0.3823 3.2049 0.9664 46 1 1.1846 3.5052 2.5703 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079342321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:31:29 Heat of formation + Delta-G solvation = -44.909141 kcal Electronic energy + Delta-G solvation = -29169.553883 eV Core-core repulsion = 25188.419421 eV Total energy + Delta-G solvation = -3981.134462 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.00458 -39.64617 -37.95300 -36.69758 -35.42518 -32.37704 -32.29934 -30.84281 -29.93683 -29.26943 -27.69473 -26.19716 -25.44110 -23.63920 -23.32127 -22.11575 -21.62313 -19.34496 -18.46503 -17.58146 -17.11326 -16.80434 -16.36404 -16.30775 -16.01070 -15.45408 -14.76376 -14.76042 -14.48237 -14.41188 -13.88020 -13.82909 -13.75232 -13.43288 -13.26112 -12.89677 -12.74294 -12.68639 -12.48519 -12.01432 -11.87604 -11.83460 -11.62896 -11.57296 -11.34601 -11.24576 -11.10264 -11.02407 -11.00207 -10.95159 -10.71734 -9.94200 -9.74923 -9.10745 -9.02541 -9.01374 -8.64530 -8.17035 -8.11171 -6.42816 -6.15676 -3.86123 2.84512 2.85602 3.04004 3.20954 3.24211 3.27158 3.33234 3.61284 3.93286 4.24695 4.29721 4.34150 4.49752 4.66962 4.75382 4.85405 4.88680 4.98937 5.10807 5.12132 5.17998 5.19438 5.23534 5.32168 5.34487 5.38362 5.45884 5.51262 5.54353 5.64926 5.67089 5.72092 5.76384 5.79540 5.87609 5.91919 5.97967 6.03720 6.12134 6.23647 6.71916 6.87172 7.53244 7.64155 8.05352 8.40003 8.61464 8.75850 9.28848 10.91440 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.010387 B = 0.003947 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2695.119855 B = 7092.310764 C = 8912.909964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.111 3.889 3 N -0.609 5.609 4 C 0.523 3.477 5 O -0.478 6.478 6 C -0.150 4.150 7 S -0.055 6.055 8 C -0.536 4.536 9 H 0.071 0.929 10 C 0.074 3.926 11 N -0.865 5.865 12 Si 0.917 3.083 13 H -0.272 1.272 14 H -0.280 1.280 15 H -0.280 1.280 16 C 0.117 3.883 17 C 0.110 3.890 18 N -0.620 5.620 19 C 0.555 3.445 20 O -0.504 6.504 21 C 0.068 3.932 22 H 0.087 0.913 23 C -0.142 4.142 24 C -0.153 4.153 25 C 0.042 3.958 26 O -0.341 6.341 27 C 0.081 3.919 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.268 0.732 36 H 0.109 0.891 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.062 0.938 44 H 0.096 0.904 45 H 0.079 0.921 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.335 -1.593 23.855 25.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.013 4.013 3 N -0.346 5.346 4 C 0.310 3.690 5 O -0.348 6.348 6 C -0.300 4.300 7 S 0.171 5.829 8 C -0.685 4.685 9 H 0.089 0.911 10 C -0.136 4.136 11 N -0.500 5.500 12 Si 0.743 3.257 13 H -0.197 1.197 14 H -0.206 1.206 15 H -0.206 1.206 16 C 0.011 3.989 17 C -0.013 4.013 18 N -0.359 5.359 19 C 0.343 3.657 20 O -0.377 6.377 21 C 0.006 3.994 22 H 0.105 0.895 23 C -0.181 4.181 24 C -0.191 4.191 25 C -0.035 4.035 26 O -0.258 6.258 27 C -0.045 4.045 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.077 0.923 36 H 0.126 0.874 37 H 0.099 0.901 38 H 0.113 0.887 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.080 0.920 44 H 0.114 0.886 45 H 0.097 0.903 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.844 0.674 23.067 23.805 hybrid contribution -1.322 -2.143 -0.786 2.638 sum -7.166 -1.469 22.281 23.451 Atomic orbital electron populations 1.22245 0.96039 1.02184 1.02636 1.21533 0.94401 0.82073 1.03244 1.47772 1.68293 1.14112 1.04411 1.20421 0.78015 0.86207 0.84344 1.90855 1.39624 1.18245 1.86120 1.23599 1.04177 1.04663 0.97589 1.85642 1.82571 1.21351 0.93287 1.22901 1.48447 1.04620 0.92503 0.91060 1.24989 0.94868 0.95373 0.98333 1.70045 1.41733 1.16772 1.21492 0.86152 0.78370 0.79892 0.81275 1.19662 1.20603 1.20581 1.22480 0.96024 0.93214 0.87215 1.23340 0.93633 0.84003 1.00330 1.49432 1.10792 1.20712 1.54957 1.19534 0.89577 0.78945 0.77647 1.90703 1.35232 1.68629 1.43122 1.22498 0.95962 0.89282 0.91639 0.89507 1.22899 1.02505 0.96312 0.96335 1.23142 1.03080 0.95392 0.97500 1.23621 0.95624 0.92490 0.91727 1.89102 1.66200 1.19194 1.51325 1.23742 0.94555 0.88510 0.97656 0.91971 0.91654 0.92509 0.89942 0.90564 0.89669 0.89617 0.92256 0.87369 0.90093 0.88713 0.90014 0.90331 0.90002 0.90337 0.91982 0.88622 0.90306 0.89402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.46 10.23 37.16 0.38 -1.08 16 2 C 0.11 1.01 5.94 -4.04 -0.02 0.99 16 3 N -0.61 -7.56 2.71 -167.91 -0.46 -8.02 16 4 C 0.52 9.54 7.29 -10.99 -0.08 9.46 16 5 O -0.48 -10.60 9.45 -10.07 -0.10 -10.70 16 6 C -0.15 -3.05 4.82 36.00 0.17 -2.88 16 7 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 8 C -0.54 -15.60 9.50 30.94 0.29 -15.31 16 9 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 10 C 0.07 2.16 5.49 -17.43 -0.10 2.06 16 11 N -0.87 -27.00 13.22 55.49 0.73 -26.26 16 12 Si 0.92 21.85 29.55 -169.99 -5.02 16.83 16 13 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 C 0.12 1.13 4.71 -70.15 -0.33 0.80 16 17 C 0.11 1.41 7.73 -2.84 -0.02 1.39 16 18 N -0.62 -9.12 2.16 -178.35 -0.39 -9.51 16 19 C 0.56 10.49 5.51 -10.99 -0.06 10.43 16 20 O -0.50 -12.39 16.77 -22.30 -0.37 -12.76 16 21 C 0.07 1.06 3.61 -27.31 -0.10 0.97 16 22 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 23 C -0.14 -1.48 6.36 -25.20 -0.16 -1.64 16 24 C -0.15 -1.46 7.15 -24.72 -0.18 -1.64 16 25 C 0.04 0.51 7.72 38.21 0.29 0.80 16 26 O -0.34 -6.21 10.73 -54.81 -0.59 -6.79 16 27 C 0.08 0.77 8.02 -2.97 -0.02 0.74 16 28 H 0.06 0.67 6.96 -51.93 -0.36 0.31 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.84 6.47 -51.93 -0.34 0.50 16 32 H 0.08 0.49 7.95 -51.93 -0.41 0.07 16 33 H 0.09 1.62 7.26 -51.92 -0.38 1.25 16 34 H 0.09 1.63 6.96 -51.92 -0.36 1.27 16 35 H 0.27 7.75 8.31 -40.82 -0.34 7.41 16 36 H 0.11 0.62 7.97 -51.93 -0.41 0.21 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 1.59 6.75 -51.93 -0.35 1.24 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.79 7.69 -51.93 -0.40 0.39 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 384.27 15.07 5.79 5.79 Total: -1.00 -41.01 384.27 -9.75 -50.75 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -7.21 Total: -0.67 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 0.07 Total: 5.10 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: -0.11 Total: -43.79 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -1.06 Total: -30.26 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -41.01 -9.75 -50.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079342321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.845 kcal (2) G-P(sol) polarization free energy of solvation -41.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds