Wall clock time and date at job start Wed Apr 1 2020 00:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46801 * 2 1 4 4 C 1.53236 * 109.46896 * 240.00547 * 2 1 3 5 5 H 1.09002 * 109.58976 * 177.85555 * 4 2 1 6 6 C 1.53001 * 109.58371 * 57.44276 * 4 2 1 7 7 S 1.81746 * 108.79684 * 297.65083 * 4 2 1 8 8 C 1.81735 * 102.30670 * 305.45792 * 7 4 2 9 9 C 1.53240 * 108.79871 * 54.54162 * 8 7 4 10 10 N 1.46376 * 109.46815 * 119.98715 * 2 1 3 11 11 C 1.34774 * 119.64645 * 234.93548 * 10 2 1 12 12 O 1.21351 * 120.00528 * 354.65902 * 11 10 2 13 13 C 1.49457 * 119.99916 * 174.65525 * 11 10 2 14 14 O 1.21350 * 120.00052 * 6.23308 * 13 11 10 15 15 N 1.34779 * 119.99944 * 186.22758 * 13 11 10 16 16 C 1.47021 * 125.64763 * 359.69696 * 15 13 11 17 17 C 1.54335 * 107.26250 * 178.84386 * 16 15 13 18 18 C 1.55151 * 103.02317 * 338.14212 * 17 16 15 19 19 O 1.42900 * 111.03621 * 277.21871 * 18 17 16 20 20 C 1.50696 * 111.00352 * 153.37979 * 18 17 16 21 21 H 1.08003 * 120.00360 * 6.34946 * 20 18 17 22 22 C 1.37880 * 119.99931 * 186.35118 * 20 18 17 23 23 N 1.31515 * 120.00035 * 359.97438 * 22 20 18 24 24 Si 1.86798 * 120.00098 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47307 * 59.99663 * 24 22 20 26 26 H 1.48503 * 109.47237 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46916 * 299.99483 * 24 22 20 28 28 C 1.47424 * 125.64711 * 180.02562 * 15 13 11 29 29 H 1.08998 * 109.47258 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46601 * 299.99423 * 1 2 3 31 31 H 1.08994 * 109.47025 * 59.99146 * 1 2 3 32 32 H 1.08997 * 109.46984 * 60.00211 * 6 4 2 33 33 H 1.09003 * 109.47466 * 180.02562 * 6 4 2 34 34 H 1.09002 * 109.47201 * 300.00502 * 6 4 2 35 35 H 1.09002 * 109.58355 * 294.74550 * 8 7 4 36 36 H 1.09001 * 109.58488 * 174.33324 * 8 7 4 37 37 H 1.08994 * 109.46716 * 182.34001 * 9 8 7 38 38 H 1.08997 * 109.46484 * 62.34164 * 9 8 7 39 39 H 1.08996 * 109.88198 * 298.38939 * 16 15 13 40 40 H 1.09002 * 109.88204 * 59.55508 * 16 15 13 41 41 H 1.08997 * 110.84744 * 219.66880 * 17 16 15 42 42 H 1.09010 * 110.66398 * 96.52649 * 17 16 15 43 43 H 0.96700 * 113.99984 * 173.67033 * 19 18 17 44 44 H 0.97003 * 120.00181 * 180.02562 * 23 22 20 45 45 H 1.09007 * 110.36490 * 322.92977 * 28 15 13 46 46 H 1.08994 * 110.36699 * 85.25458 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0407 -0.7223 -1.2513 5 1 3.1301 -0.6902 -1.2727 6 6 1.4803 -0.0410 -2.5013 7 16 1.4831 -2.4512 -1.1980 8 6 2.1019 -3.0083 0.4174 9 6 1.5850 -2.0546 1.4998 10 7 2.0178 -0.6898 1.1953 11 6 2.8745 -0.0614 2.0247 12 8 3.3129 1.0311 1.7302 13 6 3.2844 -0.7102 3.3072 14 8 2.9374 -1.8474 3.5499 15 7 4.0395 -0.0322 4.1941 16 6 4.5329 1.3424 4.0253 17 6 5.3233 1.7051 5.3003 18 6 4.7615 0.7142 6.3537 19 8 3.5403 1.1999 6.9148 20 6 5.7770 0.4399 7.4328 21 1 6.7050 0.9920 7.4540 22 6 5.5214 -0.5160 8.3930 23 7 4.3912 -1.1880 8.3675 24 14 6.7798 -0.8555 9.7311 25 1 7.0175 0.3842 10.5133 26 1 6.2693 -1.9198 10.6322 27 1 8.0534 -1.3015 9.1111 28 6 4.5133 -0.5486 5.4911 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8057 0.9990 -2.5251 33 1 1.8443 -0.5563 -3.3902 34 1 0.3912 -0.0804 -2.4793 35 1 3.1919 -3.0003 0.4136 36 1 1.7426 -4.0176 0.6180 37 1 1.9838 -2.3545 2.4688 38 1 0.4960 -2.0926 1.5274 39 1 5.1854 1.3976 3.1539 40 1 3.6923 2.0259 3.9054 41 1 5.1284 2.7355 5.5975 42 1 6.3909 1.5440 5.1499 43 1 3.1019 0.5723 7.5055 44 1 4.2112 -1.8602 9.0432 45 1 3.7506 -1.1777 5.9504 46 1 5.4398 -1.1078 5.3613 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261485607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:58 Heat of formation + Delta-G solvation = -86.609915 kcal Electronic energy + Delta-G solvation = -29333.692595 eV Core-core repulsion = 25350.749852 eV Total energy + Delta-G solvation = -3982.942743 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.92958 -38.96999 -37.55753 -37.14484 -34.60921 -33.97649 -32.31678 -30.72313 -30.37155 -29.42513 -28.01629 -26.22033 -25.43410 -24.07712 -23.00386 -22.17095 -20.33049 -19.74722 -19.27761 -17.33670 -17.28001 -16.94563 -16.21426 -15.97200 -15.84898 -15.31765 -15.11824 -14.86038 -14.65682 -14.47786 -14.40824 -13.67383 -13.32388 -13.12821 -13.06591 -12.92672 -12.89407 -12.56271 -12.44233 -12.23568 -11.91269 -11.85394 -11.73303 -11.61555 -11.42469 -11.20681 -11.09304 -10.95033 -10.67754 -10.55922 -10.54899 -10.28974 -9.90886 -9.44367 -9.07402 -8.82490 -8.71860 -8.50478 -8.06710 -7.75536 -6.36181 -4.45827 1.51697 1.60000 2.32727 2.40078 3.17655 3.23762 3.25599 3.38291 3.59303 4.19807 4.27347 4.38566 4.56684 4.81125 4.85951 4.91300 4.96461 5.05432 5.15487 5.23670 5.34931 5.37809 5.53427 5.55194 5.64488 5.69039 5.71210 5.73532 5.82647 5.92308 5.99043 6.09363 6.19607 6.30456 6.42030 6.64543 6.72851 6.79395 7.00842 7.09018 7.21866 7.65192 7.66018 7.92673 7.95067 8.27612 8.58177 9.20887 9.29703 10.71020 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.024278 B = 0.002845 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.018359 B = 9838.856376 C =10392.807652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.134 3.866 3 H 0.110 0.890 4 C -0.060 4.060 5 H 0.089 0.911 6 C -0.133 4.133 7 S -0.270 6.270 8 C -0.088 4.088 9 C 0.030 3.970 10 N -0.585 5.585 11 C 0.512 3.488 12 O -0.515 6.515 13 C 0.511 3.489 14 O -0.523 6.523 15 N -0.565 5.565 16 C 0.109 3.891 17 C -0.121 4.121 18 C 0.249 3.751 19 O -0.581 6.581 20 C -0.538 4.538 21 H 0.068 0.932 22 C 0.072 3.928 23 N -0.894 5.894 24 Si 0.905 3.095 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.275 1.275 28 C 0.090 3.910 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.116 0.884 37 H 0.187 0.813 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.381 0.619 44 H 0.272 0.728 45 H 0.093 0.907 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.999 -0.119 -16.592 17.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.029 3.971 3 H 0.128 0.872 4 C -0.190 4.190 5 H 0.108 0.892 6 C -0.191 4.191 7 S -0.043 6.043 8 C -0.237 4.237 9 C -0.092 4.092 10 N -0.319 5.319 11 C 0.295 3.705 12 O -0.390 6.390 13 C 0.295 3.705 14 O -0.405 6.405 15 N -0.295 5.295 16 C -0.013 4.013 17 C -0.159 4.159 18 C 0.209 3.791 19 O -0.389 6.389 20 C -0.576 4.576 21 H 0.086 0.914 22 C -0.132 4.132 23 N -0.532 5.532 24 Si 0.732 3.268 25 H -0.199 1.199 26 H -0.211 1.211 27 H -0.200 1.200 28 C -0.031 4.031 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.134 0.866 37 H 0.201 0.799 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.231 0.769 44 H 0.082 0.918 45 H 0.112 0.888 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.481 -0.340 -17.692 18.845 hybrid contribution 1.156 -0.266 1.699 2.072 sum -5.324 -0.606 -15.993 16.867 Atomic orbital electron populations 1.22237 0.93458 1.04046 1.02553 1.21311 0.95462 0.97584 0.82745 0.87183 1.23568 1.03130 0.93775 0.98551 0.89235 1.21664 1.02043 1.00373 0.95027 1.86726 1.76532 1.13391 1.27613 1.23865 1.03865 1.02849 0.93136 1.23733 1.01486 0.79091 1.04921 1.47880 1.44723 1.15946 1.23329 1.20349 0.79454 0.85545 0.85179 1.90717 1.53035 1.20231 1.74984 1.19579 0.80450 0.86002 0.84505 1.90057 1.55946 1.18271 1.76186 1.48725 1.46052 1.15664 1.19051 1.22207 0.98458 0.81940 0.98734 1.22718 0.99090 1.00872 0.93252 1.19630 0.83648 0.86600 0.89258 1.86136 1.39131 1.47246 1.66415 1.21417 1.03796 1.21297 1.11114 0.91390 1.25083 0.95721 0.94725 0.97657 1.69689 1.23519 1.24464 1.35548 0.86435 0.81158 0.78084 0.81097 1.19941 1.21057 1.19989 1.23589 0.99729 1.00456 0.79315 0.90411 0.92027 0.90863 0.90833 0.91476 0.91011 0.89790 0.86629 0.79894 0.90518 0.91351 0.91196 0.90409 0.90253 0.76892 0.91850 0.88837 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 8.36 37.16 0.31 -1.29 16 2 C 0.13 1.54 2.69 -67.88 -0.18 1.35 16 3 H 0.11 1.35 6.91 -51.93 -0.36 1.00 16 4 C -0.06 -0.63 3.08 -26.61 -0.08 -0.71 16 5 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 6 C -0.13 -1.04 8.80 37.16 0.33 -0.72 16 7 S -0.27 -2.98 20.28 -107.50 -2.18 -5.16 16 8 C -0.09 -1.00 6.67 37.28 0.25 -0.75 16 9 C 0.03 0.38 5.66 -3.98 -0.02 0.36 16 10 N -0.58 -8.04 2.57 -166.51 -0.43 -8.47 16 11 C 0.51 8.51 7.67 -11.58 -0.09 8.42 16 12 O -0.51 -9.11 13.49 5.50 0.07 -9.03 16 13 C 0.51 9.64 7.83 -11.58 -0.09 9.55 16 14 O -0.52 -10.19 13.21 5.50 0.07 -10.12 16 15 N -0.57 -11.33 3.33 -171.00 -0.57 -11.90 16 16 C 0.11 2.02 5.49 -3.06 -0.02 2.00 16 17 C -0.12 -2.38 6.13 -24.89 -0.15 -2.53 16 18 C 0.25 5.78 0.87 -89.62 -0.08 5.71 16 19 O -0.58 -14.24 13.16 -35.23 -0.46 -14.70 16 20 C -0.54 -13.44 8.27 -34.44 -0.28 -13.73 16 21 H 0.07 1.67 7.79 -52.48 -0.41 1.26 16 22 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 23 N -0.89 -22.73 10.69 55.43 0.59 -22.14 16 24 Si 0.91 19.68 29.54 -169.99 -5.02 14.66 16 25 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 26 H -0.29 -6.20 7.11 56.52 0.40 -5.79 16 27 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 28 C 0.09 2.02 5.38 -2.52 -0.01 2.00 16 29 H 0.08 0.78 5.84 -51.93 -0.30 0.48 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.58 6.39 -51.93 -0.33 0.24 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.53 6.40 -51.93 -0.33 0.20 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.19 2.79 3.48 -57.99 -0.20 2.58 16 38 H 0.08 0.90 6.92 -51.93 -0.36 0.54 16 39 H 0.07 1.18 7.58 -51.93 -0.39 0.78 16 40 H 0.07 1.31 7.71 -51.93 -0.40 0.90 16 41 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 42 H 0.08 1.45 8.03 -51.92 -0.42 1.04 16 43 H 0.38 9.51 7.56 45.56 0.34 9.85 16 44 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 45 H 0.09 2.32 7.33 -51.92 -0.38 1.94 16 46 H 0.07 1.62 8.03 -51.93 -0.42 1.21 16 LS Contribution 365.07 15.07 5.50 5.50 Total: -1.00 -26.52 365.07 -8.70 -35.22 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: -6.05 Total: 14.79 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: -0.22 Total: 11.36 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: -0.40 Total: -42.51 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: -0.32 Total: -33.86 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Atomic # 16 Polarization: -2.98 SS G_CDS: -2.18 Total: -5.16 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -26.52 -8.70 -35.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261485607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.390 kcal (2) G-P(sol) polarization free energy of solvation -26.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds