Wall clock time and date at job start Wed Apr 1 2020 00:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46801 * 2 1 4 4 C 1.53236 * 109.46896 * 240.00547 * 2 1 3 5 5 H 1.09002 * 109.58976 * 177.85555 * 4 2 1 6 6 C 1.53001 * 109.58371 * 57.44276 * 4 2 1 7 7 S 1.81746 * 108.79684 * 297.65083 * 4 2 1 8 8 C 1.81735 * 102.30670 * 305.45792 * 7 4 2 9 9 C 1.53240 * 108.79871 * 54.54162 * 8 7 4 10 10 N 1.46376 * 109.46815 * 119.98715 * 2 1 3 11 11 C 1.34774 * 119.64645 * 234.93548 * 10 2 1 12 12 O 1.21351 * 120.00528 * 354.65902 * 11 10 2 13 13 C 1.49457 * 119.99916 * 174.65525 * 11 10 2 14 14 O 1.21350 * 120.00052 * 6.23308 * 13 11 10 15 15 N 1.34779 * 119.99944 * 186.22758 * 13 11 10 16 16 C 1.47021 * 125.64763 * 359.69696 * 15 13 11 17 17 C 1.54335 * 107.26250 * 178.84386 * 16 15 13 18 18 C 1.55151 * 103.02317 * 338.14212 * 17 16 15 19 19 O 1.42900 * 111.03621 * 277.21871 * 18 17 16 20 20 C 1.50696 * 111.00352 * 153.37979 * 18 17 16 21 21 H 1.08003 * 120.00360 * 6.34946 * 20 18 17 22 22 C 1.37880 * 119.99931 * 186.35118 * 20 18 17 23 23 N 1.31515 * 120.00035 * 359.97438 * 22 20 18 24 24 Si 1.86798 * 120.00098 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47307 * 59.99663 * 24 22 20 26 26 H 1.48503 * 109.47237 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46916 * 299.99483 * 24 22 20 28 28 C 1.47424 * 125.64711 * 180.02562 * 15 13 11 29 29 H 1.08998 * 109.47258 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46601 * 299.99423 * 1 2 3 31 31 H 1.08994 * 109.47025 * 59.99146 * 1 2 3 32 32 H 1.08997 * 109.46984 * 60.00211 * 6 4 2 33 33 H 1.09003 * 109.47466 * 180.02562 * 6 4 2 34 34 H 1.09002 * 109.47201 * 300.00502 * 6 4 2 35 35 H 1.09002 * 109.58355 * 294.74550 * 8 7 4 36 36 H 1.09001 * 109.58488 * 174.33324 * 8 7 4 37 37 H 1.08994 * 109.46716 * 182.34001 * 9 8 7 38 38 H 1.08997 * 109.46484 * 62.34164 * 9 8 7 39 39 H 1.08996 * 109.88198 * 298.38939 * 16 15 13 40 40 H 1.09002 * 109.88204 * 59.55508 * 16 15 13 41 41 H 1.08997 * 110.84744 * 219.66880 * 17 16 15 42 42 H 1.09010 * 110.66398 * 96.52649 * 17 16 15 43 43 H 0.96700 * 113.99984 * 173.67033 * 19 18 17 44 44 H 0.97003 * 120.00181 * 180.02562 * 23 22 20 45 45 H 1.09007 * 110.36490 * 322.92977 * 28 15 13 46 46 H 1.08994 * 110.36699 * 85.25458 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0407 -0.7223 -1.2513 5 1 3.1301 -0.6902 -1.2727 6 6 1.4803 -0.0410 -2.5013 7 16 1.4831 -2.4512 -1.1980 8 6 2.1019 -3.0083 0.4174 9 6 1.5850 -2.0546 1.4998 10 7 2.0178 -0.6898 1.1953 11 6 2.8745 -0.0614 2.0247 12 8 3.3129 1.0311 1.7302 13 6 3.2844 -0.7102 3.3072 14 8 2.9374 -1.8474 3.5499 15 7 4.0395 -0.0322 4.1941 16 6 4.5329 1.3424 4.0253 17 6 5.3233 1.7051 5.3003 18 6 4.7615 0.7142 6.3537 19 8 3.5403 1.1999 6.9148 20 6 5.7770 0.4399 7.4328 21 1 6.7050 0.9920 7.4540 22 6 5.5214 -0.5160 8.3930 23 7 4.3912 -1.1880 8.3675 24 14 6.7798 -0.8555 9.7311 25 1 7.0175 0.3842 10.5133 26 1 6.2693 -1.9198 10.6322 27 1 8.0534 -1.3015 9.1111 28 6 4.5133 -0.5486 5.4911 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8057 0.9990 -2.5251 33 1 1.8443 -0.5563 -3.3902 34 1 0.3912 -0.0804 -2.4793 35 1 3.1919 -3.0003 0.4136 36 1 1.7426 -4.0176 0.6180 37 1 1.9838 -2.3545 2.4688 38 1 0.4960 -2.0926 1.5274 39 1 5.1854 1.3976 3.1539 40 1 3.6923 2.0259 3.9054 41 1 5.1284 2.7355 5.5975 42 1 6.3909 1.5440 5.1499 43 1 3.1019 0.5723 7.5055 44 1 4.2112 -1.8602 9.0432 45 1 3.7506 -1.1777 5.9504 46 1 5.4398 -1.1078 5.3613 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261485607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:57 Heat of formation + Delta-G solvation = -103.548320 kcal Electronic energy + Delta-G solvation = -29334.427100 eV Core-core repulsion = 25350.749852 eV Total energy + Delta-G solvation = -3983.677247 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.27351 -40.41250 -39.11888 -38.36078 -36.20170 -35.07354 -34.24613 -32.04059 -31.70763 -30.30334 -29.71839 -27.77576 -26.52081 -25.51275 -24.14707 -23.48974 -21.62513 -21.26355 -20.60742 -19.14503 -18.52741 -18.36584 -17.52775 -17.32254 -17.05821 -16.83854 -16.54409 -16.24987 -15.82015 -15.68500 -15.52417 -15.03437 -14.89413 -14.70019 -14.38005 -14.17193 -14.00969 -13.87712 -13.52990 -13.36911 -13.36069 -13.15264 -12.82367 -12.73056 -12.68201 -12.61540 -12.48148 -12.37078 -12.28012 -12.13300 -12.00691 -11.71611 -11.21317 -10.91665 -10.66755 -10.39911 -10.17514 -10.04604 -9.70351 -8.66504 -8.25793 -6.42257 0.19528 0.63993 1.10093 1.43454 1.45104 1.46478 1.53675 1.96777 2.23986 2.39820 2.95043 3.00998 3.45201 3.69131 3.73487 3.88049 3.97598 4.01821 4.03065 4.11637 4.23936 4.26685 4.28610 4.38193 4.61697 4.64143 4.70488 4.73492 4.78551 4.81028 4.86042 4.91057 4.99927 5.03997 5.08642 5.19639 5.27787 5.30851 5.38299 5.42302 5.73700 5.81221 6.03815 6.22584 6.54441 6.65807 6.80287 7.26222 7.34566 8.79566 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.024278 B = 0.002845 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.018359 B = 9838.856376 C =10392.807652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.130 3.870 3 H 0.105 0.895 4 C -0.057 4.057 5 H 0.077 0.923 6 C -0.128 4.128 7 S -0.264 6.264 8 C -0.087 4.087 9 C 0.032 3.968 10 N -0.576 5.576 11 C 0.514 3.486 12 O -0.527 6.527 13 C 0.505 3.495 14 O -0.535 6.535 15 N -0.576 5.576 16 C 0.118 3.882 17 C -0.115 4.115 18 C 0.234 3.766 19 O -0.587 6.587 20 C -0.557 4.557 21 H 0.069 0.931 22 C 0.031 3.969 23 N -0.912 5.912 24 Si 0.963 3.037 25 H -0.272 1.272 26 H -0.285 1.285 27 H -0.270 1.270 28 C 0.106 3.894 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.132 0.868 37 H 0.164 0.836 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.375 0.625 44 H 0.271 0.729 45 H 0.064 0.936 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.286 0.240 -18.368 19.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.026 3.974 3 H 0.123 0.877 4 C -0.187 4.187 5 H 0.095 0.905 6 C -0.187 4.187 7 S -0.037 6.037 8 C -0.235 4.235 9 C -0.090 4.090 10 N -0.309 5.309 11 C 0.297 3.703 12 O -0.404 6.404 13 C 0.290 3.710 14 O -0.417 6.417 15 N -0.306 5.306 16 C -0.004 4.004 17 C -0.153 4.153 18 C 0.194 3.806 19 O -0.395 6.395 20 C -0.595 4.595 21 H 0.087 0.913 22 C -0.171 4.171 23 N -0.551 5.551 24 Si 0.788 3.212 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.195 1.195 28 C -0.015 4.015 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.150 0.850 37 H 0.180 0.820 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.111 0.889 43 H 0.224 0.776 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.788 0.011 -19.510 20.657 hybrid contribution 1.181 -0.425 2.192 2.526 sum -5.607 -0.414 -17.319 18.208 Atomic orbital electron populations 1.22217 0.91735 1.04232 1.03477 1.21556 0.96707 0.97128 0.81967 0.87713 1.23604 1.02523 0.93459 0.99135 0.90463 1.21684 1.02518 1.00836 0.93625 1.86735 1.76259 1.13908 1.26810 1.23803 1.03246 1.03351 0.93139 1.23596 1.02171 0.78884 1.04393 1.47983 1.43377 1.16183 1.23331 1.19884 0.80275 0.85449 0.84716 1.90704 1.53953 1.20611 1.75129 1.20140 0.79763 0.85940 0.85162 1.90117 1.55903 1.18786 1.76856 1.48743 1.46941 1.16311 1.18590 1.22188 0.98486 0.81030 0.98707 1.22720 0.99830 1.00357 0.92398 1.19844 0.82967 0.88065 0.89769 1.86129 1.39744 1.47260 1.66372 1.21713 1.04265 1.21528 1.11982 0.91311 1.25767 0.97246 0.94594 0.99476 1.69794 1.24687 1.24655 1.35971 0.85532 0.79203 0.77751 0.78689 1.19762 1.21050 1.19503 1.23112 0.98152 0.99691 0.80592 0.90516 0.92691 0.88406 0.89532 0.90977 0.90059 0.90811 0.84967 0.82043 0.89083 0.89671 0.91293 0.89652 0.88948 0.77634 0.91981 0.91780 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 8.36 71.98 0.60 -2.10 16 2 C 0.13 2.75 2.69 45.09 0.12 2.87 16 3 H 0.10 2.39 6.91 -2.39 -0.02 2.37 16 4 C -0.06 -1.07 3.08 30.67 0.09 -0.98 16 5 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 6 C -0.13 -1.64 8.80 71.98 0.63 -1.00 16 7 S -0.26 -5.30 20.28 -56.49 -1.15 -6.44 16 8 C -0.09 -1.85 6.67 72.06 0.48 -1.37 16 9 C 0.03 0.78 5.66 86.48 0.49 1.27 16 10 N -0.58 -15.30 2.57 -799.09 -2.05 -17.36 16 11 C 0.51 16.90 7.67 87.27 0.67 17.57 16 12 O -0.53 -18.22 13.49 -3.25 -0.04 -18.26 16 13 C 0.51 19.29 7.83 87.27 0.68 19.98 16 14 O -0.53 -21.36 13.21 -3.25 -0.04 -21.40 16 15 N -0.58 -23.35 3.33 -813.30 -2.70 -26.05 16 16 C 0.12 4.29 5.49 86.73 0.48 4.77 16 17 C -0.12 -4.45 6.13 31.78 0.19 -4.26 16 18 C 0.23 10.99 0.87 -10.14 -0.01 10.98 16 19 O -0.59 -29.36 13.16 -148.98 -1.96 -31.32 16 20 C -0.56 -28.01 8.27 25.60 0.21 -27.80 16 21 H 0.07 3.36 7.79 -2.91 -0.02 3.34 16 22 C 0.03 1.54 5.29 84.66 0.45 1.99 16 23 N -0.91 -47.36 10.69 21.45 0.23 -47.13 16 24 Si 0.96 40.39 29.54 68.60 2.03 42.41 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 H -0.29 -11.86 7.11 99.48 0.71 -11.15 16 27 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 28 C 0.11 4.92 5.38 86.86 0.47 5.39 16 29 H 0.08 1.34 5.84 -2.39 -0.01 1.33 16 30 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.10 1.20 6.39 -2.39 -0.02 1.19 16 32 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 0.90 6.40 -2.39 -0.02 0.89 16 35 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.16 4.94 3.48 -98.35 -0.34 4.59 16 38 H 0.09 2.01 6.92 -2.39 -0.02 1.99 16 39 H 0.09 2.82 7.58 -2.39 -0.02 2.80 16 40 H 0.07 2.53 7.71 -2.39 -0.02 2.51 16 41 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 42 H 0.09 3.29 8.03 -2.38 -0.02 3.27 16 43 H 0.37 19.35 7.56 -74.06 -0.56 18.79 16 44 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 45 H 0.06 3.32 7.33 -2.38 -0.02 3.30 16 46 H 0.06 2.79 8.03 -2.39 -0.02 2.77 16 Total: -1.00 -56.78 365.07 -0.01 -56.80 By element: Atomic # 1 Polarization: 41.32 SS G_CDS: 0.12 Total: 41.44 kcal Atomic # 6 Polarization: 21.76 SS G_CDS: 5.56 Total: 27.32 kcal Atomic # 7 Polarization: -86.01 SS G_CDS: -4.53 Total: -90.54 kcal Atomic # 8 Polarization: -68.94 SS G_CDS: -2.05 Total: -70.99 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.41 kcal Atomic # 16 Polarization: -5.30 SS G_CDS: -1.15 Total: -6.44 kcal Total: -56.78 -0.01 -56.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261485607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.752 kcal (2) G-P(sol) polarization free energy of solvation -56.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds