Wall clock time and date at job start Wed Apr 1 2020 00:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46661 * 2 1 4 4 C 1.52992 * 109.47705 * 240.00190 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00597 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99622 * 179.97438 * 7 6 5 10 10 H 1.08998 * 115.51581 * 325.58918 * 9 7 6 11 11 C 1.52998 * 117.43295 * 110.95725 * 9 7 6 12 12 H 1.09002 * 119.80642 * 355.36864 * 11 9 7 13 13 C 1.54538 * 118.03091 * 198.16856 * 11 9 7 14 14 O 1.44418 * 104.72948 * 273.03897 * 13 11 9 15 15 C 1.44434 * 105.27452 * 40.52991 * 14 13 11 16 16 C 1.52999 * 117.43182 * 180.21571 * 9 7 6 17 17 H 1.08996 * 119.80966 * 5.64968 * 16 9 7 18 18 N 1.46497 * 109.47022 * 119.99544 * 2 1 3 19 19 C 1.34775 * 120.00290 * 275.00553 * 18 2 1 20 20 O 1.21284 * 120.00239 * 359.97438 * 19 18 2 21 21 C 1.50707 * 119.99766 * 179.97438 * 19 18 2 22 22 S 1.81004 * 109.46836 * 179.97438 * 21 19 18 23 23 C 1.76198 * 99.99807 * 179.97438 * 22 21 19 24 24 H 1.08004 * 120.00353 * 0.02562 * 23 22 21 25 25 C 1.38803 * 119.99953 * 180.02562 * 23 22 21 26 26 N 1.31634 * 119.99760 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00100 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47103 * 359.97438 * 27 25 23 29 29 H 1.48499 * 109.46929 * 119.99777 * 27 25 23 30 30 H 1.48494 * 109.47066 * 239.99804 * 27 25 23 31 31 H 1.09000 * 109.47812 * 299.99528 * 1 2 3 32 32 H 1.09001 * 109.46974 * 60.00366 * 1 2 3 33 33 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 35 35 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 36 36 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 37 37 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 38 38 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 39 39 H 1.09005 * 110.39577 * 154.24098 * 13 11 9 40 40 H 1.08998 * 110.51845 * 31.90359 * 13 11 9 41 41 H 1.09000 * 110.37355 * 200.65485 * 15 14 13 42 42 H 1.09000 * 110.36979 * 78.31634 * 15 14 13 43 43 H 0.97003 * 119.99849 * 95.00425 * 18 2 1 44 44 H 1.08993 * 109.47314 * 299.99790 * 21 19 18 45 45 H 1.08997 * 109.47088 * 60.00406 * 21 19 18 46 46 H 0.97001 * 119.99230 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 7 4.0534 -1.3042 -2.5094 7 6 5.3742 -1.3396 -2.7749 8 8 6.1585 -0.7997 -2.0237 9 6 5.8767 -2.0510 -4.0048 10 1 5.3171 -2.9404 -4.2943 11 6 6.4630 -1.1912 -5.1263 12 1 6.4348 -0.1044 -5.0471 13 6 6.5849 -1.8177 -6.5337 14 8 7.8631 -2.4899 -6.5270 15 6 7.9613 -3.1076 -5.2251 16 6 7.3875 -2.0591 -4.2465 17 1 8.0586 -1.6430 -3.4952 18 7 2.0183 -0.6905 1.1962 19 6 2.1469 -0.0182 2.3572 20 8 1.8588 1.1587 2.4115 21 6 2.6487 -0.7288 3.5878 22 16 2.7103 0.4345 4.9732 23 6 3.3119 -0.6311 6.2409 24 1 3.5207 -1.6677 6.0211 25 6 3.5175 -0.1383 7.5221 26 7 3.2636 1.1253 7.7899 27 14 4.1560 -1.2678 8.8660 28 1 4.3614 -2.6300 8.3115 29 1 5.4459 -0.7432 9.3821 30 1 3.1679 -1.3282 9.9728 31 1 -0.3635 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6055 -0.2617 -2.1369 35 1 1.7517 -1.7714 -1.2056 36 1 3.9995 -1.0726 -0.4258 37 1 3.8532 0.4372 -1.3572 38 1 3.4261 -1.7357 -3.1104 39 1 6.5687 -1.0408 -7.2981 40 1 5.7806 -2.5334 -6.7042 41 1 9.0026 -3.3215 -4.9843 42 1 7.3680 -4.0214 -5.1930 43 1 2.2490 -1.6317 1.1527 44 1 1.9758 -1.5505 3.8326 45 1 3.6478 -1.1212 3.3987 46 1 3.4077 1.4697 8.6852 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001758876310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:55:39 Heat of formation + Delta-G solvation = -95.907324 kcal Electronic energy + Delta-G solvation = -26248.159022 eV Core-core repulsion = 22264.813113 eV Total energy + Delta-G solvation = -3983.345909 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.21816 -39.69170 -39.22913 -36.71461 -35.08392 -34.71670 -32.42151 -31.87873 -29.67640 -29.27377 -28.50171 -26.66736 -25.47899 -24.03189 -22.32370 -21.66155 -21.21130 -20.51778 -20.33511 -18.17755 -17.79484 -16.70473 -16.62426 -16.40497 -16.12744 -15.76034 -15.62299 -15.45033 -14.92572 -14.79796 -14.41933 -14.33289 -13.87282 -13.65968 -13.48045 -13.24925 -13.14552 -12.94076 -12.65286 -12.35117 -12.18274 -12.11920 -11.96500 -11.81358 -11.58860 -11.12982 -11.06195 -11.01018 -10.96081 -10.85125 -10.74810 -10.25228 -10.20065 -9.79867 -9.48105 -9.39592 -9.07230 -8.93760 -8.22545 -6.48995 -6.21152 -3.91377 1.96056 2.58060 3.02564 3.04013 3.08795 3.22189 3.28658 3.33276 3.45879 3.70389 3.88631 3.98154 4.21007 4.24733 4.31799 4.39701 4.49074 4.55361 4.66094 4.68779 4.77712 5.06613 5.10641 5.14097 5.14316 5.17940 5.18647 5.27302 5.31095 5.41827 5.51398 5.57377 5.58872 5.65094 5.69979 5.89282 5.96999 6.00760 6.13292 6.13532 6.15423 6.62922 7.05188 7.60637 7.68311 7.81517 8.36167 8.60568 9.24426 10.86347 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.013419 B = 0.001845 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.116738 B =15172.729410 C =16798.932718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.091 0.909 4 C -0.137 4.137 5 C 0.116 3.884 6 N -0.725 5.725 7 C 0.540 3.460 8 O -0.528 6.528 9 C -0.151 4.151 10 H 0.124 0.876 11 C -0.168 4.168 12 H 0.129 0.871 13 C 0.074 3.926 14 O -0.371 6.371 15 C 0.072 3.928 16 C -0.159 4.159 17 H 0.137 0.863 18 N -0.736 5.736 19 C 0.534 3.466 20 O -0.516 6.516 21 C -0.154 4.154 22 S -0.060 6.060 23 C -0.535 4.535 24 H 0.073 0.927 25 C 0.073 3.927 26 N -0.867 5.867 27 Si 0.919 3.081 28 H -0.272 1.272 29 H -0.280 1.280 30 H -0.280 1.280 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.401 0.599 39 H 0.102 0.898 40 H 0.066 0.934 41 H 0.103 0.897 42 H 0.066 0.934 43 H 0.397 0.603 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.307 -10.295 -30.586 32.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.109 0.891 4 C -0.175 4.175 5 C -0.007 4.007 6 N -0.377 5.377 7 C 0.326 3.674 8 O -0.404 6.404 9 C -0.172 4.172 10 H 0.142 0.858 11 C -0.187 4.187 12 H 0.147 0.853 13 C -0.002 4.002 14 O -0.289 6.289 15 C -0.004 4.004 16 C -0.178 4.178 17 H 0.155 0.845 18 N -0.391 5.391 19 C 0.320 3.680 20 O -0.390 6.390 21 C -0.305 4.305 22 S 0.166 5.834 23 C -0.683 4.683 24 H 0.091 0.909 25 C -0.136 4.136 26 N -0.503 5.503 27 Si 0.745 3.255 28 H -0.196 1.196 29 H -0.205 1.205 30 H -0.206 1.206 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.235 0.765 39 H 0.120 0.880 40 H 0.084 0.916 41 H 0.122 0.878 42 H 0.084 0.916 43 H 0.231 0.769 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.561 -7.775 -29.980 30.977 hybrid contribution 0.251 -2.732 0.809 2.860 sum 0.811 -10.508 -29.171 31.017 Atomic orbital electron populations 1.22172 0.94969 1.02108 1.02862 1.20772 0.94194 0.97752 0.83196 0.89059 1.22102 0.94404 1.02109 0.98893 1.21460 0.93732 0.98071 0.87472 1.45903 1.07192 1.57297 1.27285 1.19486 0.82344 0.79925 0.85687 1.90775 1.55374 1.45114 1.49155 1.22394 0.97304 1.01796 0.95717 0.85774 1.24199 1.04173 0.99373 0.90908 0.85336 1.22962 0.86406 0.96173 0.94701 1.89216 1.36753 1.69677 1.33286 1.22987 1.02417 0.93972 0.81040 1.24192 0.91345 1.00385 1.01850 0.84517 1.46130 1.69537 1.13864 1.09578 1.20303 0.76703 0.87220 0.83761 1.90701 1.48199 1.15724 1.84383 1.23539 1.03674 1.04860 0.98421 1.85389 1.86321 1.12889 0.98755 1.22911 1.50928 0.98151 0.96321 0.90892 1.24998 0.95105 0.95549 0.97977 1.70032 1.45630 1.13184 1.21427 0.86114 0.78530 0.80136 0.80701 1.19631 1.20549 1.20579 0.91393 0.91870 0.92530 0.89704 0.90582 0.90714 0.90975 0.76500 0.87978 0.91586 0.87836 0.91623 0.76936 0.89268 0.89248 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.48 37.16 0.35 -1.21 16 2 C 0.15 1.49 2.57 -67.94 -0.17 1.32 16 3 H 0.09 1.14 7.58 -51.93 -0.39 0.75 16 4 C -0.14 -0.87 4.87 -26.74 -0.13 -1.00 16 5 C 0.12 1.00 5.56 -4.04 -0.02 0.98 16 6 N -0.73 -5.04 5.56 -60.29 -0.33 -5.37 16 7 C 0.54 5.15 7.61 -10.99 -0.08 5.06 16 8 O -0.53 -7.64 16.34 5.56 0.09 -7.55 16 9 C -0.15 -0.97 5.74 -91.77 -0.53 -1.50 16 10 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 11 C -0.17 -1.06 6.91 -89.11 -0.62 -1.67 16 12 H 0.13 0.86 8.14 -51.93 -0.42 0.44 16 13 C 0.07 0.39 7.44 37.97 0.28 0.67 16 14 O -0.37 -2.90 11.65 -35.23 -0.41 -3.31 16 15 C 0.07 0.44 7.44 37.93 0.28 0.72 16 16 C -0.16 -1.16 6.64 -89.14 -0.59 -1.75 16 17 H 0.14 1.22 7.82 -51.93 -0.41 0.81 16 18 N -0.74 -9.11 4.53 -53.81 -0.24 -9.35 16 19 C 0.53 9.70 7.81 -10.98 -0.09 9.62 16 20 O -0.52 -11.47 15.53 5.55 0.09 -11.38 16 21 C -0.15 -3.11 6.16 36.01 0.22 -2.88 16 22 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 23 C -0.53 -15.36 9.50 30.94 0.29 -15.07 16 24 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 25 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 26 N -0.87 -26.34 13.22 55.49 0.73 -25.61 16 27 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 28 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 29 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 30 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.80 7.75 -51.93 -0.40 0.39 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.40 1.43 8.47 -40.82 -0.35 1.08 16 39 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.40 3.83 8.60 -40.82 -0.35 3.48 16 44 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 45 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 46 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 401.82 15.07 6.06 6.06 Total: -1.00 -38.03 401.82 -9.51 -47.54 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -7.36 Total: 0.95 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -0.89 Total: -4.70 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.16 Total: -40.32 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.23 Total: -22.25 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -38.03 -9.51 -47.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758876310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.365 kcal (2) G-P(sol) polarization free energy of solvation -38.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds