Wall clock time and date at job start Wed Apr 1 2020 00:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46661 * 2 1 4 4 C 1.52992 * 109.47705 * 240.00190 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00597 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99622 * 179.97438 * 7 6 5 10 10 H 1.08998 * 115.51581 * 325.58918 * 9 7 6 11 11 C 1.52998 * 117.43295 * 110.95725 * 9 7 6 12 12 H 1.09002 * 119.80642 * 355.36864 * 11 9 7 13 13 C 1.54538 * 118.03091 * 198.16856 * 11 9 7 14 14 O 1.44418 * 104.72948 * 273.03897 * 13 11 9 15 15 C 1.44434 * 105.27452 * 40.52991 * 14 13 11 16 16 C 1.52999 * 117.43182 * 180.21571 * 9 7 6 17 17 H 1.08996 * 119.80966 * 5.64968 * 16 9 7 18 18 N 1.46497 * 109.47022 * 119.99544 * 2 1 3 19 19 C 1.34775 * 120.00290 * 275.00553 * 18 2 1 20 20 O 1.21284 * 120.00239 * 359.97438 * 19 18 2 21 21 C 1.50707 * 119.99766 * 179.97438 * 19 18 2 22 22 S 1.81004 * 109.46836 * 179.97438 * 21 19 18 23 23 C 1.76198 * 99.99807 * 179.97438 * 22 21 19 24 24 H 1.08004 * 120.00353 * 0.02562 * 23 22 21 25 25 C 1.38803 * 119.99953 * 180.02562 * 23 22 21 26 26 N 1.31634 * 119.99760 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00100 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47103 * 359.97438 * 27 25 23 29 29 H 1.48499 * 109.46929 * 119.99777 * 27 25 23 30 30 H 1.48494 * 109.47066 * 239.99804 * 27 25 23 31 31 H 1.09000 * 109.47812 * 299.99528 * 1 2 3 32 32 H 1.09001 * 109.46974 * 60.00366 * 1 2 3 33 33 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 35 35 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 36 36 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 37 37 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 38 38 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 39 39 H 1.09005 * 110.39577 * 154.24098 * 13 11 9 40 40 H 1.08998 * 110.51845 * 31.90359 * 13 11 9 41 41 H 1.09000 * 110.37355 * 200.65485 * 15 14 13 42 42 H 1.09000 * 110.36979 * 78.31634 * 15 14 13 43 43 H 0.97003 * 119.99849 * 95.00425 * 18 2 1 44 44 H 1.08993 * 109.47314 * 299.99790 * 21 19 18 45 45 H 1.08997 * 109.47088 * 60.00406 * 21 19 18 46 46 H 0.97001 * 119.99230 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 7 4.0534 -1.3042 -2.5094 7 6 5.3742 -1.3396 -2.7749 8 8 6.1585 -0.7997 -2.0237 9 6 5.8767 -2.0510 -4.0048 10 1 5.3171 -2.9404 -4.2943 11 6 6.4630 -1.1912 -5.1263 12 1 6.4348 -0.1044 -5.0471 13 6 6.5849 -1.8177 -6.5337 14 8 7.8631 -2.4899 -6.5270 15 6 7.9613 -3.1076 -5.2251 16 6 7.3875 -2.0591 -4.2465 17 1 8.0586 -1.6430 -3.4952 18 7 2.0183 -0.6905 1.1962 19 6 2.1469 -0.0182 2.3572 20 8 1.8588 1.1587 2.4115 21 6 2.6487 -0.7288 3.5878 22 16 2.7103 0.4345 4.9732 23 6 3.3119 -0.6311 6.2409 24 1 3.5207 -1.6677 6.0211 25 6 3.5175 -0.1383 7.5221 26 7 3.2636 1.1253 7.7899 27 14 4.1560 -1.2678 8.8660 28 1 4.3614 -2.6300 8.3115 29 1 5.4459 -0.7432 9.3821 30 1 3.1679 -1.3282 9.9728 31 1 -0.3635 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6055 -0.2617 -2.1369 35 1 1.7517 -1.7714 -1.2056 36 1 3.9995 -1.0726 -0.4258 37 1 3.8532 0.4372 -1.3572 38 1 3.4261 -1.7357 -3.1104 39 1 6.5687 -1.0408 -7.2981 40 1 5.7806 -2.5334 -6.7042 41 1 9.0026 -3.3215 -4.9843 42 1 7.3680 -4.0214 -5.1930 43 1 2.2490 -1.6317 1.1527 44 1 1.9758 -1.5505 3.8326 45 1 3.6478 -1.1212 3.3987 46 1 3.4077 1.4697 8.6852 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001758876310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:55:36 Heat of formation + Delta-G solvation = -125.479227 kcal Electronic energy + Delta-G solvation = -26249.441356 eV Core-core repulsion = 22264.813113 eV Total energy + Delta-G solvation = -3984.628243 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.79466 -40.84161 -40.08634 -37.71322 -35.72535 -35.57174 -34.60290 -33.05712 -30.64081 -29.77717 -29.68708 -27.67886 -27.21918 -24.70551 -22.95640 -22.57040 -21.73297 -21.63122 -21.14530 -19.85691 -18.74981 -17.95033 -17.51941 -17.13958 -16.91179 -16.89680 -16.56444 -16.41181 -16.13877 -16.09779 -15.84022 -15.17742 -14.92132 -14.80275 -14.50258 -14.40533 -14.02860 -13.98982 -13.58372 -13.32787 -13.17931 -13.03553 -12.92775 -12.88101 -12.62285 -12.59246 -12.44369 -12.42445 -11.92593 -11.71838 -11.48811 -11.36636 -11.17569 -11.01412 -10.91491 -10.66476 -10.29203 -10.24718 -10.08331 -8.68338 -8.36642 -6.14591 1.25841 1.26602 1.39818 1.45877 1.57119 1.62290 1.94442 2.24699 2.30829 2.47695 2.97491 3.03410 3.30675 3.37855 3.46515 3.71050 3.72625 3.85994 3.87043 4.00347 4.06850 4.07090 4.12084 4.27503 4.39873 4.42029 4.47296 4.49154 4.60582 4.69409 4.75384 4.80246 4.81923 4.88142 4.95522 5.02055 5.03363 5.13349 5.32812 5.35036 5.40145 5.55777 5.72112 6.18161 6.46856 6.51747 7.04715 7.16838 7.26658 8.72889 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.013419 B = 0.001845 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.116738 B =15172.729410 C =16798.932718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.141 3.859 3 H 0.062 0.938 4 C -0.116 4.116 5 C 0.117 3.883 6 N -0.704 5.704 7 C 0.533 3.467 8 O -0.588 6.588 9 C -0.136 4.136 10 H 0.162 0.838 11 C -0.162 4.162 12 H 0.118 0.882 13 C 0.075 3.925 14 O -0.395 6.395 15 C 0.076 3.924 16 C -0.179 4.179 17 H 0.110 0.890 18 N -0.710 5.710 19 C 0.535 3.465 20 O -0.565 6.565 21 C -0.131 4.131 22 S -0.152 6.152 23 C -0.546 4.546 24 H 0.082 0.918 25 C 0.012 3.988 26 N -0.911 5.911 27 Si 1.000 3.000 28 H -0.257 1.257 29 H -0.275 1.275 30 H -0.272 1.272 31 H 0.029 0.971 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.053 0.947 37 H 0.045 0.955 38 H 0.423 0.577 39 H 0.112 0.888 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.087 0.913 43 H 0.415 0.585 44 H 0.111 0.889 45 H 0.104 0.896 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.739 -13.779 -32.966 35.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.036 3.964 3 H 0.081 0.919 4 C -0.154 4.154 5 C -0.008 4.008 6 N -0.356 5.356 7 C 0.320 3.680 8 O -0.469 6.469 9 C -0.157 4.157 10 H 0.179 0.821 11 C -0.181 4.181 12 H 0.136 0.864 13 C -0.001 4.001 14 O -0.314 6.314 15 C 0.000 4.000 16 C -0.198 4.198 17 H 0.128 0.872 18 N -0.364 5.364 19 C 0.320 3.680 20 O -0.443 6.443 21 C -0.282 4.282 22 S 0.075 5.925 23 C -0.694 4.694 24 H 0.100 0.900 25 C -0.193 4.193 26 N -0.548 5.548 27 Si 0.821 3.179 28 H -0.180 1.180 29 H -0.200 1.200 30 H -0.197 1.197 31 H 0.048 0.952 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.133 0.867 35 H 0.126 0.874 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.261 0.739 39 H 0.130 0.870 40 H 0.109 0.891 41 H 0.123 0.877 42 H 0.105 0.895 43 H 0.252 0.748 44 H 0.129 0.871 45 H 0.122 0.878 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.531 -11.325 -32.440 34.364 hybrid contribution 0.554 -1.624 1.420 2.228 sum 0.023 -12.949 -31.020 33.614 Atomic orbital electron populations 1.22119 0.93807 1.03294 1.02295 1.20993 0.95032 0.96800 0.83560 0.91928 1.21994 0.92106 1.03725 0.97607 1.21324 0.95473 0.96535 0.87424 1.45699 1.06854 1.56249 1.26812 1.20099 0.82605 0.79235 0.86034 1.90756 1.56986 1.47741 1.51369 1.22397 0.96741 1.02482 0.94039 0.82067 1.24232 1.03287 0.98919 0.91673 0.86414 1.23133 0.86186 0.96922 0.93815 1.89192 1.38182 1.70126 1.33902 1.23045 1.02985 0.94006 0.79950 1.24163 0.91753 1.01766 1.02152 0.87230 1.45909 1.67520 1.14520 1.08473 1.20009 0.76641 0.86572 0.84751 1.90689 1.50706 1.17728 1.85202 1.23390 1.05290 1.03275 0.96292 1.85561 1.86708 1.17422 1.02825 1.23241 1.50956 0.98415 0.96811 0.89984 1.26149 0.95065 0.97250 1.00790 1.70195 1.46868 1.15452 1.22241 0.84894 0.77845 0.78178 0.76958 1.18046 1.19996 1.19737 0.95190 0.89288 0.90374 0.86671 0.87412 0.92872 0.93611 0.73912 0.86952 0.89076 0.87653 0.89506 0.74835 0.87116 0.87782 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.48 71.98 0.68 -1.97 16 2 C 0.14 2.64 2.57 44.99 0.12 2.76 16 3 H 0.06 1.59 7.58 -2.39 -0.02 1.57 16 4 C -0.12 -1.05 4.87 30.59 0.15 -0.90 16 5 C 0.12 1.86 5.56 86.38 0.48 2.34 16 6 N -0.70 -8.07 5.56 -463.06 -2.57 -10.64 16 7 C 0.53 9.68 7.61 87.66 0.67 10.35 16 8 O -0.59 -17.73 16.34 -3.03 -0.05 -17.78 16 9 C -0.14 -1.46 5.74 -11.54 -0.07 -1.53 16 10 H 0.16 0.52 8.14 -2.39 -0.02 0.50 16 11 C -0.16 -1.82 6.91 -9.82 -0.07 -1.89 16 12 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 13 C 0.08 0.60 7.44 72.51 0.54 1.14 16 14 O -0.39 -5.50 11.65 -148.98 -1.74 -7.24 16 15 C 0.08 0.81 7.44 72.49 0.54 1.35 16 16 C -0.18 -2.55 6.64 -9.84 -0.07 -2.61 16 17 H 0.11 2.15 7.82 -2.39 -0.02 2.13 16 18 N -0.71 -16.63 4.53 -442.54 -2.00 -18.63 16 19 C 0.53 19.63 7.81 87.66 0.68 20.31 16 20 O -0.57 -26.26 15.53 -3.04 -0.05 -26.31 16 21 C -0.13 -5.28 6.16 71.24 0.44 -4.85 16 22 S -0.15 -8.62 20.57 -56.49 -1.16 -9.78 16 23 C -0.55 -31.77 9.50 67.96 0.65 -31.13 16 24 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 25 C 0.01 0.70 5.49 84.86 0.47 1.17 16 26 N -0.91 -56.79 13.22 21.65 0.29 -56.50 16 27 Si 1.00 44.32 29.55 68.60 2.03 46.34 16 28 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 29 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 30 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 31 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.12 0.49 8.14 -2.39 -0.02 0.48 16 35 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.05 1.09 7.75 -2.39 -0.02 1.08 16 37 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.42 1.17 8.47 -92.71 -0.79 0.38 16 39 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 40 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 41 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.41 6.86 8.60 -92.71 -0.80 6.07 16 44 H 0.11 3.96 8.14 -2.40 -0.02 3.95 16 45 H 0.10 3.87 8.14 -2.40 -0.02 3.85 16 46 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -90.02 401.82 -0.63 -90.65 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -0.58 Total: 15.34 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: 5.21 Total: -5.46 kcal Atomic # 7 Polarization: -81.48 SS G_CDS: -4.29 Total: -85.77 kcal Atomic # 8 Polarization: -49.49 SS G_CDS: -1.83 Total: -51.32 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.78 kcal Total: -90.02 -0.63 -90.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758876310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.831 kcal (2) G-P(sol) polarization free energy of solvation -90.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds