Wall clock time and date at job start Wed Apr 1 2020 01:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00235 * 2 1 4 4 H 1.48505 * 109.46901 * 264.98633 * 3 2 1 5 5 H 1.48498 * 109.47323 * 144.98833 * 3 2 1 6 6 H 1.48500 * 109.47103 * 24.98308 * 3 2 1 7 7 C 1.38809 * 119.99608 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00253 * 187.73527 * 7 2 1 9 9 N 1.36939 * 120.00607 * 7.73884 * 7 2 1 10 10 C 1.46780 * 125.35839 * 6.31648 * 9 7 2 11 11 C 1.53917 * 107.62104 * 178.66083 * 10 9 7 12 12 H 1.09000 * 108.57516 * 101.53642 * 11 10 9 13 13 O 1.40850 * 110.46284 * 221.67185 * 11 10 9 14 14 C 1.41330 * 118.30698 * 68.19584 * 13 11 10 15 15 C 1.51953 * 111.60852 * 56.89107 * 14 13 11 16 16 N 1.44968 * 111.94342 * 319.70027 * 15 14 13 17 17 C 1.34769 * 117.33941 * 203.73336 * 16 15 14 18 18 O 1.21607 * 120.00000 * 184.30548 * 17 16 15 19 19 C 1.47512 * 120.00472 * 4.30427 * 17 16 15 20 20 C 1.41044 * 119.39151 * 333.83202 * 19 17 16 21 21 C 1.35190 * 121.65526 * 179.67642 * 20 19 17 22 22 C 1.41380 * 119.92971 * 0.60862 * 21 20 19 23 23 N 1.31919 * 134.39254 * 179.69863 * 22 21 20 24 24 N 1.39923 * 109.06382 * 179.97438 * 23 22 21 25 25 H 0.96998 * 124.99281 * 180.02562 * 24 23 22 26 26 C 1.33816 * 110.02239 * 0.02562 * 24 23 22 27 27 C 1.38538 * 107.83993 * 0.02562 * 26 24 23 28 28 C 1.38212 * 119.39661 * 154.10284 * 19 17 16 29 29 C 1.44548 * 125.31878 * 23.75623 * 16 15 14 30 30 H 1.09000 * 109.64572 * 105.96962 * 29 16 15 31 31 C 1.46867 * 125.36961 * 186.61724 * 9 7 2 32 32 H 0.96998 * 119.99520 * 0.02562 * 1 2 3 33 33 H 1.08999 * 109.82029 * 298.33987 * 10 9 7 34 34 H 1.09003 * 109.82300 * 59.28388 * 10 9 7 35 35 H 1.09007 * 109.04394 * 296.34627 * 14 13 11 36 36 H 1.08993 * 108.99619 * 177.40752 * 14 13 11 37 37 H 1.08996 * 108.99070 * 199.06640 * 15 14 13 38 38 H 1.08998 * 108.92391 * 80.29001 * 15 14 13 39 39 H 1.08005 * 119.16852 * 359.97438 * 20 19 17 40 40 H 1.07999 * 120.03271 * 180.30734 * 21 20 19 41 41 H 1.08006 * 126.08308 * 180.02562 * 26 24 23 42 42 H 1.07997 * 120.32898 * 359.97438 * 28 19 17 43 43 H 1.08998 * 110.06552 * 317.03627 * 31 9 7 44 44 H 1.09006 * 110.06279 * 78.49459 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6038 1.9851 -1.3948 5 1 3.4909 1.4730 0.8033 6 1 1.3988 2.6809 0.5913 7 6 2.0102 -1.2022 0.0005 8 1 3.0829 -1.2065 0.1264 9 7 1.3349 -2.3828 -0.1586 10 6 -0.0943 -2.5088 -0.4682 11 6 -0.4143 -4.0094 -0.5895 12 1 -0.8952 -4.3375 0.3320 13 8 -1.2755 -4.2428 -1.6793 14 6 -0.7741 -4.0403 -2.9851 15 6 0.4625 -4.8837 -3.2467 16 7 1.3454 -4.9216 -2.0974 17 6 2.6459 -5.1925 -2.3247 18 8 3.4141 -5.3137 -1.3899 19 6 3.1375 -5.3419 -3.7074 20 6 2.2443 -5.7515 -4.7192 21 6 2.6443 -5.8969 -6.0024 22 6 3.9909 -5.6485 -6.3540 23 7 4.6759 -5.7034 -7.4801 24 7 6.0037 -5.3427 -7.2254 25 1 6.7074 -5.3048 -7.8919 26 6 6.1601 -5.0578 -5.9274 27 6 4.9341 -5.2274 -5.3048 28 6 4.4663 -5.0835 -3.9866 29 6 0.9444 -4.6931 -0.7276 30 1 0.9274 -5.6399 -0.1879 31 6 1.9252 -3.7224 -0.0403 32 1 -0.4849 0.8401 -0.0004 33 1 -0.6864 -2.0657 0.3325 34 1 -0.3136 -2.0088 -1.4117 35 1 -0.5197 -2.9876 -3.1092 36 1 -1.5460 -4.3071 -3.7069 37 1 1.0035 -4.4662 -4.0958 38 1 0.1524 -5.9001 -3.4892 39 1 1.2139 -5.9494 -4.4633 40 1 1.9369 -6.2072 -6.7572 41 1 7.0787 -4.7502 -5.4498 42 1 5.1387 -4.7745 -3.2001 43 1 2.8924 -3.7505 -0.5419 44 1 2.0413 -3.9884 1.0104 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083177871.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:48 Heat of formation + Delta-G solvation = 106.209383 kcal Electronic energy + Delta-G solvation = -30646.928534 eV Core-core repulsion = 26569.195863 eV Total energy + Delta-G solvation = -4077.732671 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.148 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.61196 -40.82766 -38.54639 -37.06620 -35.72381 -34.91179 -32.53548 -32.29838 -30.96793 -29.95123 -29.30891 -27.93953 -27.31133 -25.05433 -24.61677 -23.34039 -22.48937 -21.09075 -20.83988 -19.85728 -18.84450 -18.49555 -17.77769 -16.91848 -16.68147 -16.39972 -15.72250 -15.33736 -15.10229 -14.97863 -14.87391 -14.50412 -14.13589 -14.06713 -13.98536 -13.57086 -13.38781 -12.92304 -12.53056 -12.46302 -12.15342 -12.09062 -11.77464 -11.59123 -11.14206 -10.91356 -10.85089 -10.67980 -10.59040 -10.51970 -10.50711 -10.28542 -10.07205 -9.69231 -9.40834 -9.05241 -8.81833 -8.57508 -8.20654 -7.80047 -6.76197 -5.67693 -3.02749 0.32171 1.36361 2.14720 2.38604 2.98057 3.15121 3.41822 3.46810 3.48670 3.80244 4.01369 4.14220 4.34040 4.51820 4.58259 4.81503 4.86839 4.98882 4.99899 5.14926 5.17525 5.36592 5.40446 5.44664 5.46156 5.53488 5.70922 5.75919 5.88427 5.91645 6.00254 6.10727 6.18619 6.22867 6.31913 6.33019 6.54083 6.60451 6.73350 6.87588 7.16740 7.30006 7.34305 7.53868 7.65682 7.76407 7.89692 8.29154 8.44194 9.24405 9.85579 10.49428 11.42262 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.011589 B = 0.003814 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.510401 B = 7340.445850 C = 8577.775461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.290 1.290 5 H -0.281 1.281 6 H -0.291 1.291 7 C -0.223 4.223 8 H 0.077 0.923 9 N -0.600 5.600 10 C 0.147 3.853 11 C 0.069 3.931 12 H 0.112 0.888 13 O -0.370 6.370 14 C 0.053 3.947 15 C 0.065 3.935 16 N -0.579 5.579 17 C 0.558 3.442 18 O -0.529 6.529 19 C -0.169 4.169 20 C -0.082 4.082 21 C -0.117 4.117 22 C 0.120 3.880 23 N -0.313 5.313 24 N -0.426 5.426 25 H 0.444 0.556 26 C 0.102 3.898 27 C -0.219 4.219 28 C 0.034 3.966 29 C 0.112 3.888 30 H 0.074 0.926 31 C 0.117 3.883 32 H 0.252 0.748 33 H 0.069 0.931 34 H 0.038 0.962 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.161 0.839 40 H 0.133 0.867 41 H 0.193 0.807 42 H 0.138 0.862 43 H 0.076 0.924 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.389 -13.223 -13.701 20.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.207 1.207 6 H -0.217 1.217 7 C -0.351 4.351 8 H 0.095 0.905 9 N -0.328 5.328 10 C 0.022 3.978 11 C 0.010 3.990 12 H 0.130 0.870 13 O -0.287 6.287 14 C -0.024 4.024 15 C -0.058 4.058 16 N -0.312 5.312 17 C 0.347 3.653 18 O -0.407 6.407 19 C -0.174 4.174 20 C -0.104 4.104 21 C -0.138 4.138 22 C -0.035 4.035 23 N -0.141 5.141 24 N -0.125 5.125 25 H 0.288 0.712 26 C -0.057 4.057 27 C -0.229 4.229 28 C 0.013 3.987 29 C 0.008 3.992 30 H 0.091 0.909 31 C -0.009 4.009 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.090 0.910 39 H 0.178 0.822 40 H 0.150 0.850 41 H 0.210 0.790 42 H 0.156 0.844 43 H 0.093 0.907 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 6.418 -13.375 -14.436 20.700 hybrid contribution 1.200 1.323 0.350 1.820 sum 7.618 -12.052 -14.087 20.042 Atomic orbital electron populations 1.69940 1.04839 1.25002 1.57093 1.24780 0.95656 0.97619 1.02402 0.86155 0.78654 0.83517 0.77586 1.21726 1.20698 1.21706 1.19031 0.90960 0.82519 1.42637 0.90499 1.44233 1.05146 1.00229 1.83170 1.21748 0.86376 0.88525 1.01139 1.22952 0.88509 0.98601 0.88930 0.87036 1.86872 1.39634 1.89143 1.13098 1.22343 0.95020 0.99735 0.85314 1.22606 0.93265 1.00174 0.89768 1.46476 1.08032 1.69719 1.06942 1.18223 0.81751 0.76797 0.88483 1.90726 1.55579 1.50070 1.44333 1.19467 0.94533 1.09633 0.93728 1.21995 1.01152 0.95344 0.91924 1.19758 0.91520 1.05840 0.96699 1.21112 0.95347 0.96895 0.90120 1.77639 0.87592 1.28387 1.20469 1.46315 1.10293 1.47944 1.07901 0.71158 1.22873 0.99401 0.98191 0.85196 1.19550 0.93099 1.14604 0.95610 1.20631 0.94009 0.90646 0.93428 1.21674 0.97270 0.99090 0.81215 0.90859 1.21920 0.97150 0.84712 0.97101 0.93781 0.91332 0.94401 0.92057 0.87846 0.88118 0.90959 0.82193 0.84965 0.79027 0.84415 0.90679 0.95514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.15 10.44 55.49 0.58 -26.57 16 2 C -0.01 -0.24 5.44 -17.43 -0.09 -0.34 16 3 Si 0.91 22.43 29.56 -169.99 -5.02 17.41 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 7 C -0.22 -6.36 10.24 -15.06 -0.15 -6.52 16 8 H 0.08 2.16 7.84 -52.48 -0.41 1.75 16 9 N -0.60 -15.67 3.39 -171.43 -0.58 -16.25 16 10 C 0.15 3.59 5.08 -3.41 -0.02 3.57 16 11 C 0.07 1.33 3.81 -26.40 -0.10 1.23 16 12 H 0.11 1.98 8.14 -51.93 -0.42 1.56 16 13 O -0.37 -6.49 10.25 -34.45 -0.35 -6.84 16 14 C 0.05 0.77 6.72 36.63 0.25 1.02 16 15 C 0.06 0.85 4.58 -5.39 -0.02 0.83 16 16 N -0.58 -9.78 3.09 -171.45 -0.53 -10.30 16 17 C 0.56 9.68 6.80 -12.48 -0.08 9.59 16 18 O -0.53 -10.61 13.78 5.27 0.07 -10.54 16 19 C -0.17 -2.42 5.51 -105.06 -0.58 -3.00 16 20 C -0.08 -0.96 7.29 -39.60 -0.29 -1.25 16 21 C -0.12 -1.32 10.05 -39.47 -0.40 -1.72 16 22 C 0.12 1.50 7.49 -82.98 -0.62 0.88 16 23 N -0.31 -3.70 12.69 33.30 0.42 -3.28 16 24 N -0.43 -3.31 7.17 30.87 0.22 -3.08 16 25 H 0.44 1.62 8.96 -182.73 -1.64 -0.01 16 26 C 0.10 0.80 12.09 -16.58 -0.20 0.60 16 27 C -0.22 -2.57 6.32 -105.23 -0.66 -3.23 16 28 C 0.03 0.46 9.63 -38.69 -0.37 0.09 16 29 C 0.11 2.11 3.35 -68.51 -0.23 1.88 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 C 0.12 2.65 6.28 -3.24 -0.02 2.62 16 32 H 0.25 7.23 8.31 -40.82 -0.34 6.90 16 33 H 0.07 1.87 6.96 -51.93 -0.36 1.51 16 34 H 0.04 1.01 6.31 -51.93 -0.33 0.68 16 35 H 0.06 1.04 6.84 -51.93 -0.35 0.69 16 36 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.10 1.23 4.98 -51.93 -0.26 0.98 16 38 H 0.07 0.75 6.66 -51.93 -0.35 0.40 16 39 H 0.16 1.54 3.62 -54.27 -0.20 1.35 16 40 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.19 0.67 8.06 -52.48 -0.42 0.25 16 42 H 0.14 1.79 7.80 -52.49 -0.41 1.38 16 43 H 0.08 1.80 5.06 -51.93 -0.26 1.54 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 344.39 15.07 5.19 5.19 Total: -1.00 -36.61 344.39 -9.84 -46.46 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -6.24 Total: 1.57 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: -3.60 Total: 6.25 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: 0.11 Total: -59.49 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.28 Total: -17.38 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -36.61 -9.84 -46.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083177871.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.668 kcal (2) G-P(sol) polarization free energy of solvation -36.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds