Wall clock time and date at job start Wed Apr 1 2020 01:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42092 * 108.58009 * 2 1 4 4 O 1.42099 * 108.58000 * 228.96946 * 2 1 3 5 5 C 1.81403 * 101.92021 * 114.48673 * 2 1 3 6 6 C 1.52996 * 109.47192 * 185.36624 * 5 2 1 7 7 C 1.53002 * 115.54928 * 296.00495 * 6 5 2 8 8 C 1.50702 * 109.47124 * 280.59084 * 7 6 5 9 9 O 1.21282 * 119.99908 * 354.12138 * 8 7 6 10 10 N 1.34775 * 119.99674 * 174.12988 * 8 7 6 11 11 C 1.49760 * 127.90513 * 359.19793 * 10 8 7 12 12 C 1.56019 * 105.31835 * 182.15824 * 11 10 8 13 13 H 1.09007 * 116.89475 * 159.53748 * 12 11 10 14 14 C 1.57084 * 99.61055 * 33.13305 * 12 11 10 15 15 C 1.49289 * 126.94129 * 180.02562 * 10 8 7 16 16 H 1.09004 * 116.15528 * 15.81232 * 15 10 8 17 17 C 1.56019 * 104.09007 * 246.67415 * 15 10 8 18 18 N 1.47877 * 105.10242 * 287.91911 * 17 15 10 19 19 C 1.36929 * 126.94807 * 181.73993 * 18 17 15 20 20 H 1.07999 * 120.00531 * 180.02562 * 19 18 17 21 21 C 1.38814 * 119.99618 * 0.02562 * 19 18 17 22 22 N 1.31613 * 120.00228 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99791 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47237 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46983 * 120.00167 * 23 21 19 26 26 H 1.48494 * 109.47156 * 240.00045 * 23 21 19 27 27 C 1.53006 * 117.52184 * 81.70595 * 6 5 2 28 28 C 1.52995 * 60.00128 * 107.48196 * 27 6 5 29 29 H 1.09003 * 109.47342 * 305.51353 * 1 2 3 30 30 H 1.08999 * 109.47351 * 65.51382 * 1 2 3 31 31 H 1.08997 * 109.47597 * 185.51534 * 1 2 3 32 32 H 1.08993 * 109.47506 * 65.36589 * 5 2 1 33 33 H 1.09000 * 109.47111 * 305.36321 * 5 2 1 34 34 H 1.08999 * 109.47257 * 160.58614 * 7 6 5 35 35 H 1.09004 * 109.46951 * 40.59084 * 7 6 5 36 36 H 1.08998 * 109.94018 * 63.32073 * 11 10 8 37 37 H 1.09008 * 110.57504 * 301.31737 * 11 10 8 38 38 H 1.08992 * 112.37042 * 191.71253 * 14 12 11 39 39 H 1.09003 * 112.44414 * 64.29391 * 14 12 11 40 40 H 1.08998 * 110.31891 * 169.01516 * 17 15 10 41 41 H 1.08992 * 110.40263 * 46.86740 * 17 15 10 42 42 H 0.97003 * 120.00370 * 179.97438 * 22 21 19 43 43 H 1.09000 * 117.50249 * 214.97930 * 27 6 5 44 44 H 1.08998 * 117.49203 * 359.97438 * 27 6 5 45 45 H 1.08994 * 117.50026 * 252.51217 * 28 27 6 46 46 H 1.08997 * 117.49763 * 107.48964 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1886 -0.7357 1.6153 6 6 3.6991 -0.6968 1.8554 7 6 4.5428 -1.5284 0.8871 8 6 4.4958 -2.9778 1.2972 9 8 3.9405 -3.2991 2.3264 10 7 5.0709 -3.9169 0.5201 11 6 5.7829 -3.7231 -0.7830 12 6 6.1865 -5.1562 -1.2494 13 1 6.4032 -5.2869 -2.3097 14 6 4.9713 -5.9703 -0.6765 15 6 5.1163 -5.3873 0.7746 16 1 4.4209 -5.7671 1.5231 17 6 6.6278 -5.6830 1.0241 18 7 7.2694 -5.5554 -0.3021 19 6 8.5906 -5.7568 -0.6001 20 1 8.9408 -5.6314 -1.6140 21 6 9.4799 -6.1224 0.4011 22 7 9.0533 -6.2748 1.6368 23 14 11.2822 -6.3979 -0.0054 24 1 11.5041 -6.1639 -1.4550 25 1 12.1169 -5.4547 0.7813 26 1 11.6585 -7.7936 0.3344 27 6 4.2998 0.6130 2.3700 28 6 4.1819 -0.5934 3.3035 29 1 -0.3634 0.5970 0.8365 30 1 -0.3634 0.4259 -0.9352 31 1 -0.3634 -1.0228 0.0988 32 1 1.8446 -1.7697 1.6322 33 1 1.6817 -0.1713 2.3980 34 1 5.5745 -1.1775 0.9104 35 1 4.1462 -1.4234 -0.1228 36 1 6.6713 -3.1095 -0.6336 37 1 5.1221 -3.2589 -1.5153 38 1 5.1403 -7.0465 -0.7101 39 1 4.0265 -5.6912 -1.1429 40 1 6.7568 -6.6938 1.4111 41 1 7.0475 -4.9559 1.7191 42 1 9.6746 -6.5306 2.3364 43 1 5.2958 0.8823 2.0187 44 1 3.6187 1.4474 2.5372 45 1 3.4234 -0.5527 4.0852 46 1 5.1005 -1.1179 3.5664 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567856446.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:13:46 Heat of formation + Delta-G solvation = -38.416707 kcal Electronic energy + Delta-G solvation = -29230.233366 eV Core-core repulsion = 25249.380437 eV Total energy + Delta-G solvation = -3980.852929 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.55348 -40.06222 -38.25132 -37.91203 -36.94138 -35.39469 -33.35074 -31.32680 -30.77258 -30.28570 -30.10910 -29.08910 -26.97109 -25.20794 -23.39652 -22.57404 -21.39406 -20.71441 -19.96776 -19.58648 -18.81720 -17.91803 -17.53736 -17.33635 -17.14263 -16.99439 -16.42710 -16.17912 -15.88310 -15.65289 -15.43444 -14.83128 -14.64092 -14.01427 -13.94429 -13.85387 -13.82299 -13.50345 -13.45918 -13.29216 -13.07046 -12.94914 -12.87145 -12.76410 -12.71724 -12.60425 -12.44002 -12.28460 -12.24259 -12.13015 -12.00032 -11.87195 -11.81693 -11.53583 -11.38279 -10.86942 -10.71524 -10.45081 -9.51375 -8.91249 -7.84839 -5.20539 -0.89747 1.46398 1.46792 1.57196 1.68223 1.91300 1.93760 2.47961 2.70235 2.78782 3.14562 3.32162 3.38717 3.46716 3.58358 3.62348 3.72713 3.84626 3.91074 4.02270 4.06685 4.12069 4.22002 4.23228 4.40012 4.47301 4.56286 4.62648 4.65807 4.72819 4.79996 4.85209 4.93835 4.97606 5.01393 5.03684 5.09361 5.13409 5.22987 5.24686 5.44523 5.54496 5.65403 6.09578 6.68890 7.02983 7.20542 7.70448 8.41427 9.26403 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.018826 B = 0.003044 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.984862 B = 9194.880198 C = 9586.264505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.640 4.640 2 S 2.414 3.586 3 O -0.969 6.969 4 O -0.980 6.980 5 C -0.563 4.563 6 C -0.126 4.126 7 C -0.123 4.123 8 C 0.528 3.472 9 O -0.574 6.574 10 N -0.616 5.616 11 C 0.090 3.910 12 C 0.134 3.866 13 H 0.136 0.864 14 C -0.129 4.129 15 C 0.101 3.899 16 H 0.114 0.886 17 C 0.189 3.811 18 N -0.618 5.618 19 C -0.228 4.228 20 H 0.095 0.905 21 C -0.072 4.072 22 N -0.957 5.957 23 Si 0.977 3.023 24 H -0.259 1.259 25 H -0.300 1.300 26 H -0.296 1.296 27 C -0.156 4.156 28 C -0.143 4.143 29 H 0.157 0.843 30 H 0.140 0.860 31 H 0.148 0.852 32 H 0.138 0.862 33 H 0.168 0.832 34 H 0.101 0.899 35 H 0.116 0.884 36 H 0.053 0.947 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.017 0.983 41 H -0.004 1.004 42 H 0.243 0.757 43 H 0.102 0.898 44 H 0.126 0.874 45 H 0.113 0.887 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.258 13.777 -3.539 24.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.793 4.793 2 S 2.602 3.398 3 O -0.966 6.966 4 O -0.977 6.977 5 C -0.691 4.691 6 C -0.127 4.127 7 C -0.163 4.163 8 C 0.318 3.682 9 O -0.455 6.455 10 N -0.350 5.350 11 C -0.034 4.034 12 C 0.028 3.972 13 H 0.153 0.847 14 C -0.168 4.168 15 C -0.003 4.003 16 H 0.132 0.868 17 C 0.063 3.937 18 N -0.342 5.342 19 C -0.357 4.357 20 H 0.113 0.887 21 C -0.265 4.265 22 N -0.606 5.606 23 Si 0.806 3.194 24 H -0.183 1.183 25 H -0.227 1.227 26 H -0.223 1.223 27 C -0.192 4.192 28 C -0.181 4.181 29 H 0.175 0.825 30 H 0.158 0.842 31 H 0.166 0.834 32 H 0.157 0.843 33 H 0.186 0.814 34 H 0.119 0.881 35 H 0.134 0.866 36 H 0.071 0.929 37 H 0.115 0.885 38 H 0.101 0.899 39 H 0.120 0.880 40 H 0.035 0.965 41 H 0.014 0.986 42 H 0.052 0.948 43 H 0.120 0.880 44 H 0.145 0.855 45 H 0.131 0.869 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.751 13.939 -3.548 24.433 hybrid contribution 1.113 -0.859 1.102 1.787 sum -18.638 13.079 -2.446 22.900 Atomic orbital electron populations 1.30123 1.21724 1.13750 1.13669 1.07784 0.80119 0.74685 0.77260 1.93542 1.80797 1.35505 1.86788 1.93532 1.80726 1.67547 1.55868 1.29842 1.00755 1.14976 1.23573 1.20528 0.91789 1.01755 0.98645 1.21556 1.02727 0.90476 1.01528 1.20496 0.77332 0.87702 0.82672 1.90613 1.46575 1.82927 1.25396 1.49750 1.54464 1.07203 1.23550 1.23546 0.95607 1.00166 0.84042 1.23591 0.87108 0.90807 0.95711 0.84661 1.24047 0.99118 1.00123 0.93549 1.24096 0.96727 0.80246 0.99187 0.86837 1.21509 0.88210 0.96873 0.87091 1.45529 1.04227 1.80082 1.04370 1.19580 0.83349 1.37991 0.94808 0.88710 1.25667 1.02405 1.02882 0.95533 1.70171 1.34272 1.55346 1.00858 0.85013 0.79867 0.76459 0.78021 1.18260 1.22747 1.22340 1.23443 1.03239 0.90941 1.01612 1.22865 1.02705 1.00684 0.91844 0.82509 0.84158 0.83372 0.84339 0.81416 0.88087 0.86633 0.92881 0.88531 0.89934 0.88046 0.96508 0.98592 0.94763 0.87997 0.85537 0.86874 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -3.56 10.62 113.37 1.20 -2.35 16 2 S 2.41 37.89 5.12 -56.49 -0.29 37.60 16 3 O -0.97 -21.00 18.02 -127.37 -2.29 -23.30 16 4 O -0.98 -23.49 16.01 -127.37 -2.04 -25.53 16 5 C -0.56 -8.87 5.66 71.98 0.41 -8.46 16 6 C -0.13 -2.95 1.02 -52.18 -0.05 -3.00 16 7 C -0.12 -3.57 4.94 29.85 0.15 -3.42 16 8 C 0.53 19.16 7.82 87.66 0.69 19.85 16 9 O -0.57 -23.16 15.50 -3.04 -0.05 -23.21 16 10 N -0.62 -23.07 3.01 -763.48 -2.30 -25.37 16 11 C 0.09 3.08 6.16 86.79 0.53 3.62 16 12 C 0.13 4.83 5.53 46.93 0.26 5.09 16 13 H 0.14 4.13 8.14 -2.38 -0.02 4.11 16 14 C -0.13 -4.20 6.82 33.45 0.23 -3.97 16 15 C 0.10 3.99 5.19 46.92 0.24 4.23 16 16 H 0.11 4.39 8.05 -2.38 -0.02 4.37 16 17 C 0.19 9.61 4.76 87.16 0.41 10.02 16 18 N -0.62 -30.26 3.02 -648.48 -1.96 -32.22 16 19 C -0.23 -12.29 10.38 84.04 0.87 -11.41 16 20 H 0.10 4.72 7.83 -2.91 -0.02 4.70 16 21 C -0.07 -4.11 5.49 84.86 0.47 -3.65 16 22 N -0.96 -58.89 10.56 21.65 0.23 -58.66 16 23 Si 0.98 45.78 29.55 68.60 2.03 47.81 16 24 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 25 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 26 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 27 C -0.16 -3.12 9.84 30.59 0.30 -2.82 16 28 C -0.14 -3.40 8.94 30.59 0.27 -3.12 16 29 H 0.16 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.15 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.14 2.27 8.00 -2.39 -0.02 2.25 16 33 H 0.17 1.29 8.10 -2.39 -0.02 1.27 16 34 H 0.10 2.89 7.95 -2.39 -0.02 2.87 16 35 H 0.12 3.17 5.60 -2.38 -0.01 3.16 16 36 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.10 2.66 8.14 -2.38 -0.02 2.64 16 38 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 39 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 40 H 0.02 0.96 7.47 -2.39 -0.02 0.94 16 41 H 0.00 -0.25 7.66 -2.39 -0.02 -0.27 16 42 H 0.24 14.71 8.31 -92.71 -0.77 13.94 16 43 H 0.10 2.04 8.09 -2.39 -0.02 2.02 16 44 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -83.24 381.88 0.28 -82.96 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.97 Total: 19.32 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: 5.98 Total: 0.60 kcal Atomic # 7 Polarization: -112.23 SS G_CDS: -4.03 Total: -116.26 kcal Atomic # 8 Polarization: -67.65 SS G_CDS: -4.38 Total: -72.03 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Atomic # 16 Polarization: 37.89 SS G_CDS: -0.29 Total: 37.60 kcal Total: -83.24 0.28 -82.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567856446.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.541 kcal (2) G-P(sol) polarization free energy of solvation -83.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds