Wall clock time and date at job start Wed Apr 1 2020 01:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 120.00146 * 2 1 4 4 H 1.48499 * 109.46958 * 270.00032 * 3 2 1 5 5 H 1.48502 * 109.47100 * 29.99767 * 3 2 1 6 6 H 1.48495 * 109.47192 * 149.99758 * 3 2 1 7 7 C 1.38816 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99637 * 157.94021 * 7 2 1 9 9 N 1.36928 * 120.00162 * 337.94357 * 7 2 1 10 10 C 1.46498 * 120.00333 * 324.92278 * 9 7 2 11 11 C 1.53002 * 109.47096 * 270.00442 * 10 9 7 12 12 N 1.46498 * 109.47348 * 179.97438 * 11 10 9 13 13 C 1.34783 * 120.00370 * 179.97438 * 12 11 10 14 14 O 1.21594 * 119.99357 * 359.97438 * 13 12 11 15 15 C 1.47486 * 119.99943 * 180.02562 * 13 12 11 16 16 N 1.33519 * 119.93294 * 0.02562 * 15 13 12 17 17 N 1.28379 * 123.16929 * 179.97438 * 16 15 13 18 18 C 1.34035 * 121.91923 * 359.97438 * 17 16 15 19 19 C 1.40255 * 121.54734 * 179.97438 * 18 17 16 20 20 C 1.36301 * 119.68454 * 180.02562 * 19 18 17 21 21 C 1.39211 * 121.10560 * 0.02562 * 20 19 18 22 22 C 1.36399 * 120.81467 * 0.02562 * 21 20 19 23 23 C 1.39992 * 119.48899 * 359.69966 * 22 21 20 24 24 C 1.39864 * 119.92550 * 179.97438 * 15 13 12 25 25 O 1.35277 * 121.38457 * 359.97438 * 24 15 13 26 26 C 1.46501 * 120.00276 * 144.92475 * 9 7 2 27 27 C 1.53003 * 117.49512 * 3.23348 * 26 9 7 28 28 C 1.53005 * 117.49655 * 294.57704 * 26 9 7 29 29 H 0.97001 * 119.99791 * 356.06742 * 1 2 3 30 30 H 1.08995 * 109.47585 * 150.00316 * 10 9 7 31 31 H 1.08999 * 109.47230 * 29.99991 * 10 9 7 32 32 H 1.09004 * 109.47185 * 59.99650 * 11 10 9 33 33 H 1.09001 * 109.47033 * 299.99442 * 11 10 9 34 34 H 0.97006 * 120.00180 * 0.02562 * 12 11 10 35 35 H 1.07995 * 120.16263 * 0.04705 * 19 18 17 36 36 H 1.08000 * 119.44751 * 179.97438 * 20 19 18 37 37 H 1.08005 * 119.59667 * 179.97438 * 21 20 19 38 38 H 1.07997 * 120.25118 * 179.97438 * 22 21 20 39 39 H 0.96699 * 113.99451 * 89.99768 * 25 24 15 40 40 H 1.08997 * 115.55439 * 148.90484 * 26 9 7 41 41 H 1.09000 * 117.50010 * 0.02562 * 27 26 9 42 42 H 1.09003 * 117.49570 * 145.02351 * 27 26 9 43 43 H 1.09001 * 117.49467 * 214.97226 * 28 26 9 44 44 H 1.08997 * 117.49918 * 359.97061 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0310 -1.2366 -0.3508 9 7 1.4008 -2.3444 0.4463 10 6 0.4456 -2.2801 1.5552 11 6 1.1886 -2.4652 2.8798 12 7 0.2336 -2.4003 3.9888 13 6 0.6644 -2.5391 5.2583 14 8 1.8458 -2.7186 5.4831 15 6 -0.2973 -2.4743 6.3747 16 7 -1.5945 -2.2786 6.1260 17 7 -2.4843 -2.2124 7.0490 18 6 -2.1706 -2.3371 8.3462 19 6 -3.1491 -2.2628 9.3482 20 6 -2.7876 -2.3943 10.6558 21 6 -1.4593 -2.6013 11.0174 22 6 -0.4810 -2.6778 10.0699 23 6 -0.8202 -2.5525 8.7175 24 6 0.1514 -2.6190 7.6914 25 8 1.4595 -2.8197 7.9719 26 6 1.7039 -3.6310 -0.1855 27 6 2.7655 -3.6441 -1.2873 28 6 1.2874 -3.8162 -1.6461 29 1 -0.4850 0.8381 0.0576 30 1 -0.2968 -3.0701 1.4416 31 1 -0.0521 -1.3104 1.5503 32 1 1.9311 -1.6753 2.9935 33 1 1.6863 -3.4350 2.8848 34 1 -0.7091 -2.2582 3.8094 35 1 -4.1842 -2.1026 9.0851 36 1 -3.5441 -2.3361 11.4243 37 1 -1.1999 -2.7018 12.0610 38 1 0.5467 -2.8382 10.3607 39 1 1.9621 -2.0048 8.1077 40 1 1.6464 -4.5011 0.4684 41 1 3.2386 -2.6957 -1.5416 42 1 3.4061 -4.5231 -1.3583 43 1 0.9563 -4.8083 -1.9530 44 1 0.7874 -2.9811 -2.1366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691227708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:35:00 Heat of formation + Delta-G solvation = 58.423362 kcal Electronic energy + Delta-G solvation = -28675.889210 eV Core-core repulsion = 24596.084381 eV Total energy + Delta-G solvation = -4079.804828 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.148 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.79871 -39.40622 -38.13155 -37.95759 -37.06332 -34.74525 -33.28260 -32.86364 -31.98728 -30.91718 -30.50279 -27.73718 -25.44036 -25.31659 -24.20907 -22.71646 -21.95312 -21.32302 -20.87744 -19.76984 -19.43841 -18.92960 -18.41501 -17.01410 -16.41136 -16.13331 -15.72425 -15.57593 -15.33673 -15.04327 -14.81678 -14.63361 -14.52487 -14.40000 -13.87218 -13.57216 -12.94768 -12.84718 -12.62402 -12.57692 -12.54142 -12.17216 -11.91793 -11.56247 -11.26049 -11.03594 -10.74235 -10.71979 -10.71121 -10.32309 -10.15016 -10.09394 -9.87905 -9.80353 -9.71291 -9.62891 -9.28171 -8.75631 -8.54590 -8.45796 -6.62945 -5.83804 -3.44030 -0.49118 0.02843 1.21767 2.10780 3.09293 3.11841 3.28726 3.33929 3.41778 3.45804 3.59055 3.74840 3.90182 4.15690 4.32189 4.41932 4.51071 4.61821 4.72090 4.93300 4.97541 5.12075 5.26610 5.30844 5.38566 5.39946 5.62604 5.74437 5.83206 5.91559 6.04274 6.11155 6.17888 6.21260 6.29278 6.50466 6.52419 6.62561 6.80529 6.98475 7.05257 7.06931 7.22642 7.55591 7.77372 7.82541 8.25305 8.41488 8.45021 9.09470 9.72463 10.27526 11.12730 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.016052 B = 0.002450 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.936210 B =11423.547484 C =11830.272278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.011 3.989 3 Si 0.896 3.104 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.260 4.260 8 H 0.068 0.932 9 N -0.547 5.547 10 C 0.135 3.865 11 C 0.098 3.902 12 N -0.696 5.696 13 C 0.568 3.432 14 O -0.526 6.526 15 C -0.033 4.033 16 N -0.169 5.169 17 N -0.209 5.209 18 C 0.084 3.916 19 C -0.082 4.082 20 C -0.090 4.090 21 C -0.103 4.103 22 C -0.086 4.086 23 C -0.106 4.106 24 C 0.204 3.796 25 O -0.456 6.456 26 C 0.119 3.881 27 C -0.195 4.195 28 C -0.220 4.220 29 H 0.256 0.744 30 H 0.034 0.966 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.409 0.591 35 H 0.148 0.852 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.142 0.858 39 H 0.409 0.591 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.017 -4.786 22.455 23.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.189 4.189 3 Si 0.725 3.275 4 H -0.212 1.212 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.389 4.389 8 H 0.085 0.915 9 N -0.263 5.263 10 C 0.008 3.992 11 C -0.027 4.027 12 N -0.346 5.346 13 C 0.350 3.650 14 O -0.402 6.402 15 C -0.168 4.168 16 N -0.028 5.028 17 N -0.067 5.067 18 C -0.042 4.042 19 C -0.103 4.103 20 C -0.110 4.110 21 C -0.122 4.122 22 C -0.105 4.105 23 C -0.114 4.114 24 C 0.144 3.856 25 O -0.267 6.267 26 C 0.010 3.990 27 C -0.234 4.234 28 C -0.261 4.261 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.125 0.875 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.244 0.756 35 H 0.166 0.834 36 H 0.156 0.844 37 H 0.154 0.846 38 H 0.160 0.840 39 H 0.270 0.730 40 H 0.105 0.895 41 H 0.116 0.884 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.416 -5.108 21.367 22.627 hybrid contribution 1.193 1.141 0.966 1.913 sum -4.222 -3.967 22.333 23.072 Atomic orbital electron populations 1.70031 1.05475 1.26171 1.50685 1.25135 0.95017 0.98800 0.99958 0.86420 0.79653 0.83588 0.77880 1.21180 1.21418 1.20213 1.19068 0.94527 0.85411 1.39891 0.91452 1.43220 1.49216 1.01695 1.32204 1.21111 0.90970 1.03887 0.83210 1.22436 0.92635 1.01255 0.86344 1.45983 1.13110 1.70208 1.05282 1.17293 0.86662 0.78654 0.82419 1.90824 1.15752 1.49534 1.84117 1.23343 0.94111 1.04802 0.94538 1.73230 0.98359 1.04600 1.26606 1.73868 1.25274 1.10222 0.97352 1.20408 0.91838 0.97952 0.93987 1.20827 0.99459 0.98892 0.91087 1.21119 0.96695 0.96911 0.96275 1.21122 0.92754 0.98107 1.00239 1.20933 1.00978 0.98205 0.90374 1.19210 0.93720 1.03070 0.95441 1.19463 0.86016 0.89822 0.90274 1.84583 1.15408 1.35144 1.91547 1.21241 1.00587 0.89952 0.87210 1.23044 0.91931 1.01930 1.06450 1.23359 0.97378 1.00694 1.04652 0.93431 0.94770 0.87508 0.91245 0.92784 0.75596 0.83428 0.84366 0.84594 0.84014 0.72971 0.89451 0.88418 0.90706 0.91175 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.43 11.33 55.49 0.63 -23.80 16 2 C 0.01 0.30 4.96 -17.43 -0.09 0.22 16 3 Si 0.90 21.25 29.61 -169.99 -5.03 16.21 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.26 -6.85 8.63 -15.06 -0.13 -6.98 16 8 H 0.07 1.79 6.55 -52.48 -0.34 1.44 16 9 N -0.55 -13.23 2.78 -165.66 -0.46 -13.69 16 10 C 0.14 3.03 5.45 -4.04 -0.02 3.01 16 11 C 0.10 2.00 6.00 -4.04 -0.02 1.98 16 12 N -0.70 -12.51 5.55 -61.36 -0.34 -12.85 16 13 C 0.57 10.10 7.79 -12.49 -0.10 10.01 16 14 O -0.53 -10.46 15.21 -16.33 -0.25 -10.71 16 15 C -0.03 -0.50 6.83 -82.76 -0.57 -1.07 16 16 N -0.17 -2.59 10.68 33.31 0.36 -2.24 16 17 N -0.21 -2.93 11.54 32.20 0.37 -2.55 16 18 C 0.08 0.97 6.68 -84.82 -0.57 0.40 16 19 C -0.08 -0.65 9.99 -39.52 -0.40 -1.05 16 20 C -0.09 -0.50 9.94 -39.92 -0.40 -0.90 16 21 C -0.10 -0.57 9.96 -39.88 -0.40 -0.97 16 22 C -0.09 -0.66 9.62 -39.59 -0.38 -1.04 16 23 C -0.11 -1.16 5.75 -106.69 -0.61 -1.77 16 24 C 0.20 2.62 6.80 -37.75 -0.26 2.36 16 25 O -0.46 -5.29 11.07 -39.13 -0.43 -5.72 16 26 C 0.12 2.54 6.56 -67.93 -0.45 2.09 16 27 C -0.20 -3.86 9.80 -26.69 -0.26 -4.13 16 28 C -0.22 -4.48 10.36 -26.69 -0.28 -4.76 16 29 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 30 H 0.03 0.72 8.07 -51.93 -0.42 0.30 16 31 H 0.11 2.68 5.36 -51.93 -0.28 2.40 16 32 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 33 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.41 6.86 7.80 -40.82 -0.32 6.54 16 35 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.14 0.35 8.06 -52.49 -0.42 -0.07 16 37 H 0.14 0.37 8.06 -52.48 -0.42 -0.05 16 38 H 0.14 0.83 7.74 -52.49 -0.41 0.43 16 39 H 0.41 3.03 9.06 45.56 0.41 3.45 16 40 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 41 H 0.10 2.09 6.37 -51.93 -0.33 1.76 16 42 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 43 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 44 H 0.09 2.14 8.14 -51.93 -0.42 1.71 16 LS Contribution 376.52 15.07 5.67 5.67 Total: -1.00 -32.48 376.52 -9.03 -41.51 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -4.62 Total: 10.75 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -4.92 Total: -2.58 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: 0.56 Total: -55.13 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.68 Total: -16.43 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.48 -9.03 -41.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691227708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.929 kcal (2) G-P(sol) polarization free energy of solvation -32.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds