Wall clock time and date at job start Wed Apr 1 2020 01:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 120.00146 * 2 1 4 4 H 1.48499 * 109.46958 * 270.00032 * 3 2 1 5 5 H 1.48502 * 109.47100 * 29.99767 * 3 2 1 6 6 H 1.48495 * 109.47192 * 149.99758 * 3 2 1 7 7 C 1.38816 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99637 * 157.94021 * 7 2 1 9 9 N 1.36928 * 120.00162 * 337.94357 * 7 2 1 10 10 C 1.46498 * 120.00333 * 324.92278 * 9 7 2 11 11 C 1.53002 * 109.47096 * 270.00442 * 10 9 7 12 12 N 1.46498 * 109.47348 * 179.97438 * 11 10 9 13 13 C 1.34783 * 120.00370 * 179.97438 * 12 11 10 14 14 O 1.21594 * 119.99357 * 359.97438 * 13 12 11 15 15 C 1.47486 * 119.99943 * 180.02562 * 13 12 11 16 16 N 1.33519 * 119.93294 * 0.02562 * 15 13 12 17 17 N 1.28379 * 123.16929 * 179.97438 * 16 15 13 18 18 C 1.34035 * 121.91923 * 359.97438 * 17 16 15 19 19 C 1.40255 * 121.54734 * 179.97438 * 18 17 16 20 20 C 1.36301 * 119.68454 * 180.02562 * 19 18 17 21 21 C 1.39211 * 121.10560 * 0.02562 * 20 19 18 22 22 C 1.36399 * 120.81467 * 0.02562 * 21 20 19 23 23 C 1.39992 * 119.48899 * 359.69966 * 22 21 20 24 24 C 1.39864 * 119.92550 * 179.97438 * 15 13 12 25 25 O 1.35277 * 121.38457 * 359.97438 * 24 15 13 26 26 C 1.46501 * 120.00276 * 144.92475 * 9 7 2 27 27 C 1.53003 * 117.49512 * 3.23348 * 26 9 7 28 28 C 1.53005 * 117.49655 * 294.57704 * 26 9 7 29 29 H 0.97001 * 119.99791 * 356.06742 * 1 2 3 30 30 H 1.08995 * 109.47585 * 150.00316 * 10 9 7 31 31 H 1.08999 * 109.47230 * 29.99991 * 10 9 7 32 32 H 1.09004 * 109.47185 * 59.99650 * 11 10 9 33 33 H 1.09001 * 109.47033 * 299.99442 * 11 10 9 34 34 H 0.97006 * 120.00180 * 0.02562 * 12 11 10 35 35 H 1.07995 * 120.16263 * 0.04705 * 19 18 17 36 36 H 1.08000 * 119.44751 * 179.97438 * 20 19 18 37 37 H 1.08005 * 119.59667 * 179.97438 * 21 20 19 38 38 H 1.07997 * 120.25118 * 179.97438 * 22 21 20 39 39 H 0.96699 * 113.99451 * 89.99768 * 25 24 15 40 40 H 1.08997 * 115.55439 * 148.90484 * 26 9 7 41 41 H 1.09000 * 117.50010 * 0.02562 * 27 26 9 42 42 H 1.09003 * 117.49570 * 145.02351 * 27 26 9 43 43 H 1.09001 * 117.49467 * 214.97226 * 28 26 9 44 44 H 1.08997 * 117.49918 * 359.97061 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0310 -1.2366 -0.3508 9 7 1.4008 -2.3444 0.4463 10 6 0.4456 -2.2801 1.5552 11 6 1.1886 -2.4652 2.8798 12 7 0.2336 -2.4003 3.9888 13 6 0.6644 -2.5391 5.2583 14 8 1.8458 -2.7186 5.4831 15 6 -0.2973 -2.4743 6.3747 16 7 -1.5945 -2.2786 6.1260 17 7 -2.4843 -2.2124 7.0490 18 6 -2.1706 -2.3371 8.3462 19 6 -3.1491 -2.2628 9.3482 20 6 -2.7876 -2.3943 10.6558 21 6 -1.4593 -2.6013 11.0174 22 6 -0.4810 -2.6778 10.0699 23 6 -0.8202 -2.5525 8.7175 24 6 0.1514 -2.6190 7.6914 25 8 1.4595 -2.8197 7.9719 26 6 1.7039 -3.6310 -0.1855 27 6 2.7655 -3.6441 -1.2873 28 6 1.2874 -3.8162 -1.6461 29 1 -0.4850 0.8381 0.0576 30 1 -0.2968 -3.0701 1.4416 31 1 -0.0521 -1.3104 1.5503 32 1 1.9311 -1.6753 2.9935 33 1 1.6863 -3.4350 2.8848 34 1 -0.7091 -2.2582 3.8094 35 1 -4.1842 -2.1026 9.0851 36 1 -3.5441 -2.3361 11.4243 37 1 -1.1999 -2.7018 12.0610 38 1 0.5467 -2.8382 10.3607 39 1 1.9621 -2.0048 8.1077 40 1 1.6464 -4.5011 0.4684 41 1 3.2386 -2.6957 -1.5416 42 1 3.4061 -4.5231 -1.3583 43 1 0.9563 -4.8083 -1.9530 44 1 0.7874 -2.9811 -2.1366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691227708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:34:59 Heat of formation + Delta-G solvation = 36.138790 kcal Electronic energy + Delta-G solvation = -28676.855541 eV Core-core repulsion = 24596.084381 eV Total energy + Delta-G solvation = -4080.771160 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.148 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.68717 -40.67435 -39.08955 -38.90295 -38.66913 -36.33926 -35.01926 -33.79134 -32.90706 -32.46202 -31.47998 -29.41097 -26.68422 -26.26572 -25.72363 -23.61537 -23.38668 -22.91456 -22.20532 -21.57055 -20.27299 -19.97749 -19.42379 -18.23635 -17.81622 -17.38410 -17.12648 -16.98565 -16.60384 -16.25943 -16.12956 -15.72413 -15.65522 -15.52163 -15.13832 -14.92455 -14.46566 -14.44660 -13.78068 -13.64235 -13.45893 -13.28186 -13.17365 -12.94144 -12.90695 -12.60814 -12.52318 -12.16451 -12.14412 -11.92930 -11.69619 -11.58421 -11.39072 -11.10780 -11.03504 -10.90632 -10.52554 -10.50162 -10.12925 -9.41778 -8.58556 -7.84528 -5.48633 -1.29219 -0.82630 0.52239 1.19524 1.41871 1.45854 1.54798 1.88742 2.02781 2.39650 2.47528 2.68396 2.75045 3.11395 3.13338 3.33486 3.40054 3.54010 3.62286 3.68165 4.02985 4.12961 4.24645 4.29114 4.33271 4.34538 4.41315 4.51680 4.58885 4.62090 4.76479 4.87563 4.94069 4.97012 5.02761 5.17280 5.21067 5.27610 5.29303 5.39925 5.54283 5.65104 5.66744 5.74270 6.31073 6.37096 6.43844 6.98985 7.10887 7.31279 7.79264 8.29440 9.07857 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.016052 B = 0.002450 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.936210 B =11423.547484 C =11830.272278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.034 4.034 3 Si 0.950 3.050 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.275 1.275 7 C -0.262 4.262 8 H 0.062 0.938 9 N -0.564 5.564 10 C 0.143 3.857 11 C 0.122 3.878 12 N -0.696 5.696 13 C 0.571 3.429 14 O -0.554 6.554 15 C -0.065 4.065 16 N -0.194 5.194 17 N -0.229 5.229 18 C 0.067 3.933 19 C -0.098 4.098 20 C -0.065 4.065 21 C -0.082 4.082 22 C -0.096 4.096 23 C -0.113 4.113 24 C 0.209 3.791 25 O -0.463 6.463 26 C 0.097 3.903 27 C -0.182 4.182 28 C -0.213 4.213 29 H 0.252 0.748 30 H 0.043 0.957 31 H 0.081 0.919 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.413 0.587 35 H 0.161 0.839 36 H 0.181 0.819 37 H 0.178 0.822 38 H 0.160 0.840 39 H 0.424 0.576 40 H 0.110 0.890 41 H 0.076 0.924 42 H 0.111 0.889 43 H 0.103 0.897 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.336 -5.774 26.025 27.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.232 4.232 3 Si 0.778 3.222 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.200 1.200 7 C -0.392 4.392 8 H 0.080 0.920 9 N -0.281 5.281 10 C 0.016 3.984 11 C -0.004 4.004 12 N -0.347 5.347 13 C 0.355 3.645 14 O -0.432 6.432 15 C -0.200 4.200 16 N -0.054 5.054 17 N -0.088 5.088 18 C -0.059 4.059 19 C -0.119 4.119 20 C -0.085 4.085 21 C -0.101 4.101 22 C -0.115 4.115 23 C -0.122 4.122 24 C 0.150 3.850 25 O -0.277 6.277 26 C -0.011 4.011 27 C -0.220 4.220 28 C -0.254 4.254 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.250 0.750 35 H 0.179 0.821 36 H 0.199 0.801 37 H 0.196 0.804 38 H 0.177 0.823 39 H 0.289 0.711 40 H 0.128 0.872 41 H 0.095 0.905 42 H 0.129 0.871 43 H 0.121 0.879 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.728 -6.101 24.937 26.303 hybrid contribution 1.214 1.380 0.136 1.843 sum -4.515 -4.720 25.073 25.909 Atomic orbital electron populations 1.70138 1.06480 1.26387 1.52184 1.25739 0.95663 1.01243 1.00512 0.85565 0.78509 0.80448 0.77669 1.20954 1.21635 1.19998 1.19213 0.94399 0.86551 1.39084 0.92031 1.43406 1.49344 1.02290 1.33096 1.20936 0.90974 1.02672 0.83819 1.21930 0.92069 1.00079 0.86335 1.45856 1.12900 1.70735 1.05165 1.17619 0.86847 0.77376 0.82673 1.90782 1.16973 1.50815 1.84606 1.22927 0.93954 1.08620 0.94516 1.73109 0.98494 1.06039 1.27752 1.73731 1.25223 1.11116 0.98698 1.20847 0.93164 0.98279 0.93659 1.21140 0.99520 0.99789 0.91457 1.21681 0.97793 0.93079 0.95948 1.21691 0.92057 0.94608 1.01788 1.21240 1.02741 0.98463 0.89014 1.19382 0.92913 1.03384 0.96527 1.19530 0.86729 0.88833 0.89937 1.84527 1.15274 1.36432 1.91427 1.21549 1.02132 0.89424 0.88023 1.23059 0.91869 1.02403 1.04627 1.23267 0.97733 1.01065 1.03301 0.93831 0.93882 0.90127 0.93944 0.92762 0.75023 0.82107 0.80132 0.80436 0.82268 0.71132 0.87199 0.90544 0.87100 0.87909 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.20 11.33 21.65 0.25 -51.95 16 2 C -0.03 -1.86 4.96 84.86 0.42 -1.44 16 3 Si 0.95 44.93 29.61 68.60 2.03 46.96 16 4 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 5 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 6 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 7 C -0.26 -14.23 8.63 84.04 0.73 -13.50 16 8 H 0.06 3.35 6.55 -2.91 -0.02 3.33 16 9 N -0.56 -27.95 2.78 -678.03 -1.88 -29.83 16 10 C 0.14 6.65 5.45 86.38 0.47 7.12 16 11 C 0.12 5.19 6.00 86.38 0.52 5.71 16 12 N -0.70 -26.55 5.55 -466.30 -2.59 -29.14 16 13 C 0.57 21.44 7.79 86.68 0.68 22.12 16 14 O -0.55 -22.96 15.21 16.65 0.25 -22.71 16 15 C -0.07 -2.12 6.83 41.72 0.29 -1.83 16 16 N -0.19 -6.33 10.68 -48.52 -0.52 -6.85 16 17 N -0.23 -6.63 11.54 -52.03 -0.60 -7.23 16 18 C 0.07 1.48 6.68 40.15 0.27 1.75 16 19 C -0.10 -1.30 9.99 22.31 0.22 -1.08 16 20 C -0.07 -0.39 9.94 22.05 0.22 -0.17 16 21 C -0.08 -0.48 9.96 22.07 0.22 -0.26 16 22 C -0.10 -1.15 9.62 22.27 0.21 -0.94 16 23 C -0.11 -2.36 5.75 -21.20 -0.12 -2.48 16 24 C 0.21 5.45 6.80 23.46 0.16 5.61 16 25 O -0.46 -10.74 11.07 -64.96 -0.72 -11.46 16 26 C 0.10 4.08 6.56 44.99 0.30 4.38 16 27 C -0.18 -6.98 9.80 30.62 0.30 -6.68 16 28 C -0.21 -8.52 10.36 30.62 0.32 -8.20 16 29 H 0.25 14.08 8.32 -92.71 -0.77 13.31 16 30 H 0.04 1.88 8.07 -2.39 -0.02 1.87 16 31 H 0.08 4.26 5.36 -2.39 -0.01 4.25 16 32 H 0.04 2.02 8.14 -2.38 -0.02 2.00 16 33 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.41 14.92 7.80 -92.70 -0.72 14.20 16 35 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 36 H 0.18 -0.34 8.06 -2.91 -0.02 -0.36 16 37 H 0.18 -0.31 8.06 -2.91 -0.02 -0.34 16 38 H 0.16 1.33 7.74 -2.91 -0.02 1.31 16 39 H 0.42 6.30 9.06 -74.06 -0.67 5.63 16 40 H 0.11 4.12 8.14 -2.39 -0.02 4.10 16 41 H 0.08 3.28 6.37 -2.39 -0.02 3.26 16 42 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 43 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 44 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -74.77 376.52 1.09 -73.67 By element: Atomic # 1 Polarization: 28.76 SS G_CDS: -0.32 Total: 28.44 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 5.19 Total: 10.10 kcal Atomic # 7 Polarization: -119.66 SS G_CDS: -5.34 Total: -125.01 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -0.47 Total: -34.17 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -74.77 1.09 -73.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691227708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.813 kcal (2) G-P(sol) polarization free energy of solvation -74.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds