Wall clock time and date at job start Wed Apr 1 2020 01:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35213 * 126.06381 * 2 1 4 4 C 1.40456 * 107.86804 * 180.14005 * 3 2 1 5 5 N 1.39934 * 125.97928 * 179.88929 * 4 3 2 6 6 C 1.34776 * 120.00469 * 359.71605 * 5 4 3 7 7 O 1.21401 * 119.99359 * 359.97438 * 6 5 4 8 8 C 1.49246 * 120.00495 * 179.97438 * 6 5 4 9 9 O 1.21387 * 119.99966 * 0.02562 * 8 6 5 10 10 N 1.34770 * 120.00108 * 179.97438 * 8 6 5 11 11 C 1.39728 * 120.00245 * 184.62027 * 10 8 6 12 12 C 1.38951 * 120.07302 * 324.91034 * 11 10 8 13 13 C 1.38082 * 119.92132 * 179.97438 * 12 11 10 14 14 C 1.38318 * 120.07313 * 0.02562 * 13 12 11 15 15 C 1.38266 * 120.15533 * 359.95089 * 14 13 12 16 16 C 1.50701 * 119.96141 * 180.02562 * 15 14 13 17 17 C 1.38114 * 120.07804 * 0.05412 * 15 14 13 18 18 N 1.31277 * 108.03994 * 359.62564 * 4 3 2 19 19 N 1.34992 * 126.06247 * 179.73216 * 2 1 3 20 20 C 1.46501 * 125.96837 * 359.96885 * 19 2 1 21 21 C 1.50701 * 109.47385 * 270.00353 * 20 19 2 22 22 H 1.08000 * 119.99884 * 0.02562 * 21 20 19 23 23 C 1.37878 * 120.00029 * 180.02562 * 21 20 19 24 24 N 1.31513 * 119.99880 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00040 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47083 * 89.99946 * 25 23 21 27 27 H 1.48498 * 109.47187 * 210.00020 * 25 23 21 28 28 H 1.48501 * 109.47214 * 330.00075 * 25 23 21 29 29 H 1.08996 * 109.46895 * 270.27222 * 1 2 3 30 30 H 1.08998 * 109.47323 * 30.27307 * 1 2 3 31 31 H 1.09001 * 109.46786 * 150.27162 * 1 2 3 32 32 H 1.07997 * 126.06700 * 0.02562 * 3 2 1 33 33 H 0.97009 * 119.99803 * 179.71333 * 5 4 3 34 34 H 0.97001 * 120.00246 * 4.62858 * 10 8 6 35 35 H 1.07994 * 120.04222 * 0.02562 * 12 11 10 36 36 H 1.07994 * 119.96175 * 179.97438 * 13 12 11 37 37 H 1.08004 * 119.91938 * 179.97438 * 14 13 12 38 38 H 1.08993 * 109.47569 * 270.02635 * 16 15 14 39 39 H 1.08998 * 109.47039 * 30.03184 * 16 15 14 40 40 H 1.09005 * 109.46759 * 150.02688 * 16 15 14 41 41 H 1.08000 * 120.04059 * 179.70382 * 17 15 14 42 42 H 1.08996 * 109.47274 * 30.00926 * 20 19 2 43 43 H 1.09008 * 109.46812 * 150.00295 * 20 19 2 44 44 H 0.97000 * 119.99988 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3030 1.0930 0.0000 4 6 3.6373 0.6544 -0.0033 5 7 4.7719 1.4735 -0.0065 6 6 4.6352 2.8143 -0.0125 7 8 3.5277 3.3114 -0.0155 8 6 5.8453 3.6878 -0.0154 9 8 6.9527 3.1907 -0.0128 10 7 5.7085 5.0285 -0.0219 11 6 6.8376 5.8456 -0.1220 12 6 8.0293 5.4635 0.4818 13 6 9.1433 6.2731 0.3804 14 6 9.0737 7.4633 -0.3209 15 6 7.8896 7.8462 -0.9233 16 6 7.8188 9.1436 -1.6868 17 6 6.7714 7.0414 -0.8258 18 7 3.6338 -0.6583 0.0030 19 7 2.3017 -1.0912 0.0051 20 6 1.8497 -2.4848 0.0123 21 6 1.6952 -2.9555 1.4355 22 1 1.9117 -2.2837 2.2530 23 6 1.2776 -4.2439 1.6940 24 7 1.0146 -5.0621 0.6985 25 14 1.0855 -4.8272 3.4581 26 1 -0.2974 -4.5505 3.9231 27 1 1.3485 -6.2870 3.5282 28 1 2.0526 -4.1077 4.3255 29 1 -0.3633 0.0049 1.0276 30 1 -0.3634 0.8875 -0.5181 31 1 -0.3633 -0.8924 -0.5096 32 1 1.9716 2.1209 0.0004 33 1 5.6569 1.0762 -0.0044 34 1 4.8263 5.4264 0.0431 35 1 8.0845 4.5342 1.0291 36 1 10.0698 5.9770 0.8498 37 1 9.9465 8.0948 -0.3983 38 1 7.5236 9.9468 -1.0117 39 1 8.7965 9.3681 -2.1131 40 1 7.0849 9.0542 -2.4878 41 1 5.8455 7.3434 -1.2926 42 1 0.8909 -2.5584 -0.5009 43 1 2.5841 -3.1075 -0.4988 44 1 0.7205 -5.9683 0.8804 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354450708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:29:46 Heat of formation + Delta-G solvation = 39.578966 kcal Electronic energy + Delta-G solvation = -27814.339441 eV Core-core repulsion = 23733.717458 eV Total energy + Delta-G solvation = -4080.621983 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.45467 -40.66333 -39.54479 -38.43112 -35.82871 -34.82304 -33.42626 -32.80681 -31.56953 -30.96058 -30.32384 -27.36230 -27.04488 -26.48612 -25.54614 -23.18021 -22.71147 -22.19155 -20.64989 -19.99461 -19.73938 -18.33910 -17.34392 -16.84934 -16.74941 -16.35898 -16.20181 -16.06313 -15.40176 -15.25317 -14.66399 -14.54272 -14.27413 -14.19309 -14.05140 -13.86299 -13.43341 -13.17575 -12.68983 -12.54648 -12.52906 -12.40424 -12.31352 -12.21736 -11.87074 -11.55714 -11.47683 -11.38969 -11.13652 -10.85853 -10.67868 -10.60201 -10.28977 -10.03518 -9.67902 -9.62549 -9.08391 -8.68009 -8.53348 -8.08831 -7.62345 -6.29638 -4.37341 0.67970 1.04361 1.27110 1.89277 2.56054 2.89710 3.06030 3.19001 3.25866 3.31523 3.42995 3.58963 3.71900 4.20442 4.28745 4.44809 4.52636 4.77992 4.94156 5.03145 5.04525 5.14004 5.22000 5.27465 5.34984 5.44984 5.57810 5.70386 5.79079 5.87472 5.97648 6.02253 6.04699 6.14561 6.24813 6.26153 6.33637 6.48941 6.65810 6.77713 6.83337 6.98930 7.21734 7.28736 7.50563 7.62359 7.81946 7.83556 7.93849 8.50331 8.69220 9.29217 10.77877 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.025860 B = 0.001855 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.477914 B =15087.520067 C =15675.242196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.094 3.906 3 C -0.288 4.288 4 C 0.256 3.744 5 N -0.596 5.596 6 C 0.515 3.485 7 O -0.495 6.495 8 C 0.518 3.482 9 O -0.495 6.495 10 N -0.644 5.644 11 C 0.144 3.856 12 C -0.124 4.124 13 C -0.098 4.098 14 C -0.133 4.133 15 C -0.070 4.070 16 C -0.114 4.114 17 C -0.139 4.139 18 N -0.309 5.309 19 N -0.311 5.311 20 C 0.257 3.743 21 C -0.537 4.537 22 H 0.065 0.935 23 C 0.066 3.934 24 N -0.891 5.891 25 Si 0.907 3.093 26 H -0.277 1.277 27 H -0.283 1.283 28 H -0.272 1.272 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.161 0.839 33 H 0.423 0.577 34 H 0.424 0.576 35 H 0.140 0.860 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.128 0.872 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.096 25.725 -3.590 27.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.038 4.038 3 C -0.319 4.319 4 C 0.004 3.996 5 N -0.244 5.244 6 C 0.294 3.706 7 O -0.368 6.368 8 C 0.299 3.701 9 O -0.368 6.368 10 N -0.291 5.291 11 C 0.050 3.950 12 C -0.144 4.144 13 C -0.116 4.116 14 C -0.151 4.151 15 C -0.071 4.071 16 C -0.171 4.171 17 C -0.160 4.160 18 N -0.140 5.140 19 N -0.093 5.093 20 C 0.139 3.861 21 C -0.576 4.576 22 H 0.083 0.917 23 C -0.137 4.137 24 N -0.528 5.528 25 Si 0.734 3.266 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.178 0.822 33 H 0.261 0.739 34 H 0.263 0.737 35 H 0.158 0.842 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.146 0.854 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.685 24.295 -3.653 26.791 hybrid contribution -0.486 0.076 0.987 1.103 sum 10.200 24.371 -2.666 26.554 Atomic orbital electron populations 1.20352 0.87619 1.02987 1.03323 1.21090 0.95056 0.87024 1.00614 1.21227 0.89465 0.99927 1.21306 1.18857 0.86643 0.89696 1.04443 1.41944 1.08953 1.04185 1.69286 1.19630 0.89131 0.82644 0.79164 1.90737 1.25635 1.73841 1.46540 1.20049 0.89478 0.83073 0.77479 1.90797 1.26196 1.74088 1.45729 1.43051 1.10306 1.04962 1.70776 1.17711 0.87472 0.91645 0.98133 1.21335 0.92047 1.01202 0.99842 1.21070 0.98213 0.93958 0.98396 1.21077 0.97572 0.97178 0.99294 1.19698 0.92948 0.96457 0.97996 1.20797 1.02927 0.93944 0.99406 1.20809 0.99487 0.94909 1.00749 1.77338 1.00042 1.08185 1.28401 1.49091 1.00830 1.08008 1.51406 1.19761 0.96107 0.71086 0.99121 1.21297 1.47032 0.98041 0.91228 0.91705 1.24923 0.94610 0.96001 0.98201 1.69915 1.44725 1.07025 1.31180 0.86342 0.78667 0.77944 0.83671 1.20276 1.20838 1.19687 0.90265 0.90697 0.90717 0.82178 0.73914 0.73723 0.84179 0.85467 0.85895 0.90980 0.91347 0.91398 0.85378 0.92587 0.92816 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.36 10.11 36.01 0.36 -1.00 16 2 C 0.09 1.89 6.92 -82.28 -0.57 1.32 16 3 C -0.29 -5.61 9.51 -39.82 -0.38 -5.99 16 4 C 0.26 5.08 8.10 -154.55 -1.25 3.83 16 5 N -0.60 -9.50 5.43 -11.61 -0.06 -9.56 16 6 C 0.52 7.32 7.85 -11.68 -0.09 7.23 16 7 O -0.49 -7.60 13.60 5.45 0.07 -7.52 16 8 C 0.52 6.34 7.72 -11.68 -0.09 6.25 16 9 O -0.49 -6.82 13.91 5.46 0.08 -6.74 16 10 N -0.64 -6.36 5.32 -10.33 -0.05 -6.42 16 11 C 0.14 1.42 6.30 -83.74 -0.53 0.90 16 12 C -0.12 -1.28 8.70 -39.37 -0.34 -1.62 16 13 C -0.10 -0.82 10.04 -39.61 -0.40 -1.22 16 14 C -0.13 -0.99 9.70 -39.54 -0.38 -1.37 16 15 C -0.07 -0.52 5.88 -104.66 -0.62 -1.14 16 16 C -0.11 -0.56 10.01 36.01 0.36 -0.20 16 17 C -0.14 -1.14 9.62 -39.38 -0.38 -1.52 16 18 N -0.31 -7.03 12.59 31.41 0.40 -6.63 16 19 N -0.31 -7.18 3.59 -58.32 -0.21 -7.39 16 20 C 0.26 6.45 5.99 -5.19 -0.03 6.42 16 21 C -0.54 -14.57 9.39 -34.44 -0.32 -14.90 16 22 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 23 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 24 N -0.89 -24.71 13.29 55.43 0.74 -23.97 16 25 Si 0.91 20.90 29.54 -169.99 -5.02 15.88 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.22 7.07 -51.93 -0.37 0.85 16 32 H 0.16 2.91 5.91 -52.49 -0.31 2.60 16 33 H 0.42 6.08 8.29 -40.82 -0.34 5.74 16 34 H 0.42 3.40 8.30 -40.82 -0.34 3.06 16 35 H 0.14 1.59 6.22 -52.49 -0.33 1.26 16 36 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 37 H 0.12 0.65 8.06 -52.48 -0.42 0.23 16 38 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 40 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 41 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 42 H 0.06 1.38 7.04 -51.93 -0.37 1.02 16 43 H 0.05 1.44 8.14 -51.92 -0.42 1.02 16 44 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 381.75 15.07 5.75 5.75 Total: -1.00 -31.62 381.75 -8.46 -40.08 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -5.39 Total: 7.85 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -4.75 Total: -1.33 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: 0.80 Total: -53.97 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: 0.15 Total: -14.27 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.62 -8.46 -40.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354450708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.659 kcal (2) G-P(sol) polarization free energy of solvation -31.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds