Wall clock time and date at job start Wed Apr 1 2020 00:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31293 * 1 3 3 Si 1.86798 * 119.99677 * 2 1 4 4 H 1.48499 * 109.47154 * 274.97470 * 3 2 1 5 5 H 1.48501 * 109.47197 * 34.97748 * 3 2 1 6 6 H 1.48506 * 109.47304 * 154.97833 * 3 2 1 7 7 C 1.38988 * 120.00394 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00124 * 185.93922 * 7 2 1 9 9 N 1.37322 * 119.99691 * 5.93943 * 7 2 1 10 10 C 1.36500 * 126.06535 * 174.13345 * 9 7 2 11 11 C 1.35696 * 107.50297 * 180.02562 * 10 9 7 12 12 N 1.40537 * 126.08388 * 179.97438 * 11 10 9 13 13 C 1.34767 * 120.00134 * 180.02562 * 12 11 10 14 14 O 1.21610 * 120.00370 * 359.97438 * 13 12 11 15 15 C 1.47608 * 120.00221 * 179.97438 * 13 12 11 16 16 C 1.40288 * 120.50052 * 179.97438 * 15 13 12 17 17 C 1.37959 * 118.35519 * 179.75202 * 16 15 13 18 18 C 1.39159 * 119.26174 * 0.55012 * 17 16 15 19 19 O 1.35506 * 119.52496 * 179.70462 * 18 17 16 20 20 C 1.42895 * 117.00188 * 179.73380 * 19 18 17 21 21 C 1.54890 * 110.75803 * 150.00419 * 20 19 18 22 22 C 1.54263 * 104.19704 * 156.25639 * 21 20 19 23 23 C 1.53881 * 106.59975 * 336.38748 * 22 21 20 24 24 C 1.54264 * 106.59561 * 0.02562 * 23 22 21 25 25 N 1.32410 * 120.95144 * 359.43686 * 18 17 16 26 26 C 1.31667 * 121.80062 * 0.27226 * 25 18 17 27 27 C 1.40660 * 107.83407 * 0.22504 * 11 10 9 28 28 N 1.30914 * 108.38434 * 359.61639 * 27 11 10 29 29 H 0.96994 * 120.00402 * 0.02562 * 1 2 3 30 30 H 1.07991 * 126.24885 * 0.05930 * 10 9 7 31 31 H 0.97002 * 119.99790 * 359.97438 * 12 11 10 32 32 H 1.08005 * 120.82103 * 0.04182 * 16 15 13 33 33 H 1.07992 * 120.36479 * 180.26015 * 17 16 15 34 34 H 1.09005 * 110.81747 * 26.66222 * 20 19 18 35 35 H 1.09005 * 110.48526 * 37.57468 * 21 20 19 36 36 H 1.09000 * 110.48480 * 274.93378 * 21 20 19 37 37 H 1.09004 * 110.03483 * 95.67318 * 22 21 20 38 38 H 1.08999 * 110.03312 * 217.05489 * 22 21 20 39 39 H 1.09001 * 110.03220 * 119.28595 * 23 22 21 40 40 H 1.09002 * 110.03265 * 240.71645 * 23 22 21 41 41 H 1.09001 * 110.48500 * 142.29077 * 24 23 22 42 42 H 1.09002 * 110.48808 * 264.93015 * 24 23 22 43 43 H 1.07997 * 119.68612 * 180.02562 * 26 25 18 44 44 H 1.07997 * 125.81300 * 179.77367 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2468 1.6178 0.0000 4 1 2.3892 2.1072 -1.3948 5 1 1.5008 2.6200 0.8026 6 1 3.5931 1.4122 0.5922 7 6 2.0080 -1.2036 0.0005 8 1 3.0836 -1.2060 0.0973 9 7 1.3269 -2.3897 -0.1220 10 6 1.8865 -3.6283 -0.2488 11 6 0.8734 -4.5262 -0.3426 12 7 1.0110 -5.9174 -0.4862 13 6 -0.0845 -6.6980 -0.5685 14 8 -1.1922 -6.1987 -0.5180 15 6 0.0601 -8.1592 -0.7199 16 6 -1.0731 -8.9816 -0.8060 17 6 -0.8867 -10.3408 -0.9521 18 6 0.4080 -10.8488 -0.9973 19 8 0.5972 -12.1835 -1.1346 20 6 1.9485 -12.6459 -1.1806 21 6 2.0589 -14.0776 -0.6001 22 6 3.3360 -14.6512 -1.2480 23 6 3.5622 -13.8606 -2.5487 24 6 2.4149 -12.8339 -2.6454 25 7 1.4578 -10.0462 -0.9133 26 6 1.3259 -8.7430 -0.7791 27 6 -0.3391 -3.8162 -0.2763 28 7 -0.0652 -2.5433 -0.1396 29 1 -0.4850 0.8400 -0.0004 30 1 2.9426 -3.8527 -0.2701 31 1 1.8946 -6.3157 -0.5269 32 1 -2.0669 -8.5607 -0.7638 33 1 -1.7362 -11.0035 -1.0258 34 1 2.6104 -11.9616 -0.6497 35 1 1.1889 -14.6713 -0.8810 36 1 2.1640 -14.0425 0.4843 37 1 4.1860 -14.5194 -0.5783 38 1 3.1983 -15.7089 -1.4722 39 1 4.5219 -13.3452 -2.5103 40 1 3.5339 -14.5345 -3.4049 41 1 2.7798 -11.8915 -3.0540 42 1 1.6022 -13.2264 -3.2565 43 1 2.2058 -8.1203 -0.7142 44 1 -1.3277 -4.2478 -0.3268 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781957310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:52 Heat of formation + Delta-G solvation = 43.399532 kcal Electronic energy + Delta-G solvation = -27871.691174 eV Core-core repulsion = 23791.234864 eV Total energy + Delta-G solvation = -4080.456310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.03836 -39.94208 -39.14662 -38.15274 -36.60494 -34.34980 -33.23764 -32.66342 -31.07631 -30.17639 -29.15289 -28.39371 -27.58508 -25.09749 -24.16289 -23.78486 -21.28711 -20.95322 -20.73439 -20.50903 -19.47602 -18.89164 -17.80132 -17.29791 -16.84040 -16.10119 -15.60308 -15.49769 -15.44969 -15.01067 -14.88541 -14.61007 -14.27022 -13.88350 -13.77149 -13.41253 -13.23571 -13.20428 -13.02357 -12.86151 -12.71145 -12.56642 -11.69696 -11.68618 -11.57541 -11.46063 -11.29121 -11.07180 -10.95490 -10.90754 -10.84034 -10.53572 -10.23562 -10.09577 -9.97669 -9.26235 -9.18712 -8.82223 -8.71229 -8.07122 -6.71953 -6.57609 -4.24115 0.64103 1.02373 2.69114 2.86143 3.02749 3.04545 3.09939 3.50644 3.55460 3.85763 3.87141 3.93067 4.13759 4.20040 4.44651 4.47796 4.63204 4.69507 4.79911 4.85335 4.99135 5.00052 5.02006 5.06543 5.11982 5.20012 5.24014 5.39335 5.45203 5.50133 5.56368 5.63735 5.77297 5.82370 5.90562 5.97834 6.19030 6.23242 6.44942 6.88069 6.94032 6.98942 7.08385 7.21752 7.53650 7.84544 8.12984 8.25180 8.60133 8.80038 9.36239 9.65214 10.38625 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.025747 B = 0.001812 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.259166 B =15449.318933 C =16331.487944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.323 4.323 8 H 0.117 0.883 9 N -0.142 5.142 10 C -0.082 4.082 11 C -0.061 4.061 12 N -0.616 5.616 13 C 0.548 3.452 14 O -0.533 6.533 15 C -0.208 4.208 16 C 0.015 3.985 17 C -0.197 4.197 18 C 0.336 3.664 19 O -0.294 6.294 20 C 0.080 3.920 21 C -0.122 4.122 22 C -0.122 4.122 23 C -0.122 4.122 24 C -0.140 4.140 25 N -0.543 5.543 26 C 0.172 3.828 27 C -0.030 4.030 28 N -0.261 5.261 29 H 0.275 0.725 30 H 0.146 0.854 31 H 0.395 0.605 32 H 0.156 0.844 33 H 0.147 0.853 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.163 0.837 44 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.172 -25.195 -2.885 26.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.456 4.456 8 H 0.134 0.866 9 N 0.091 4.909 10 C -0.233 4.233 11 C -0.167 4.167 12 N -0.258 5.258 13 C 0.335 3.665 14 O -0.411 6.411 15 C -0.214 4.214 16 C -0.011 4.011 17 C -0.218 4.218 18 C 0.157 3.843 19 O -0.201 6.201 20 C 0.024 3.976 21 C -0.160 4.160 22 C -0.160 4.160 23 C -0.160 4.160 24 C -0.178 4.178 25 N -0.266 5.266 26 C 0.014 3.986 27 C -0.205 4.205 28 N -0.092 5.092 29 H 0.086 0.914 30 H 0.164 0.836 31 H 0.229 0.771 32 H 0.173 0.827 33 H 0.164 0.836 34 H 0.119 0.881 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.180 0.820 44 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 5.347 -24.099 -2.774 24.841 hybrid contribution 0.726 0.030 -0.108 0.735 sum 6.073 -24.069 -2.882 24.991 Atomic orbital electron populations 1.70218 1.06165 1.28028 1.35088 1.25649 0.95691 1.00296 0.95453 0.85812 0.79454 0.80028 0.78862 1.19636 1.20091 1.18772 1.19888 0.92165 0.80676 1.52836 0.86561 1.44558 1.04017 1.03723 1.38620 1.21262 0.96821 0.85780 1.19455 1.17242 0.94423 0.81406 1.23607 1.42379 1.07949 1.05397 1.70053 1.17666 0.84720 0.85081 0.79074 1.90682 1.25284 1.74290 1.50855 1.20912 0.94986 0.95146 1.10351 1.21552 0.99779 0.91258 0.88529 1.21030 0.95648 0.95840 1.09233 1.20011 0.90025 0.84266 0.89977 1.86245 1.30273 1.17641 1.85956 1.23500 0.81220 0.95755 0.97136 1.22460 0.98883 0.94253 1.00408 1.22063 0.97252 0.99830 0.96807 1.22037 0.98517 0.97560 0.97877 1.22754 0.98684 0.99964 0.96415 1.67212 1.33154 1.06077 1.20179 1.22622 0.96305 0.89276 0.90371 1.24129 0.98009 0.90882 1.07522 1.78259 0.90290 1.15112 1.25561 0.91435 0.83616 0.77094 0.82677 0.83562 0.88074 0.90408 0.90837 0.91333 0.91197 0.91354 0.91374 0.90852 0.90808 0.82028 0.80649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.40 11.84 55.49 0.66 -20.75 16 2 C 0.05 1.19 5.50 -17.50 -0.10 1.10 16 3 Si 0.93 18.82 29.56 -169.99 -5.02 13.79 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 7 C -0.32 -8.50 10.24 -14.81 -0.15 -8.65 16 8 H 0.12 2.72 7.84 -52.49 -0.41 2.31 16 9 N -0.14 -3.86 3.74 -11.41 -0.04 -3.91 16 10 C -0.08 -1.90 11.49 -16.38 -0.19 -2.09 16 11 C -0.06 -1.40 6.90 -83.86 -0.58 -1.97 16 12 N -0.62 -10.78 5.42 -10.92 -0.06 -10.84 16 13 C 0.55 9.62 7.74 -12.44 -0.10 9.52 16 14 O -0.53 -11.30 13.56 5.27 0.07 -11.23 16 15 C -0.21 -2.82 5.89 -104.82 -0.62 -3.43 16 16 C 0.01 0.18 9.70 -38.91 -0.38 -0.20 16 17 C -0.20 -2.11 10.02 -39.34 -0.39 -2.50 16 18 C 0.34 3.88 7.49 -16.96 -0.13 3.75 16 19 O -0.29 -3.14 9.89 -18.21 -0.18 -3.32 16 20 C 0.08 0.71 3.19 -24.75 -0.08 0.63 16 21 C -0.12 -0.84 6.55 -25.07 -0.16 -1.00 16 22 C -0.12 -0.67 6.80 -25.61 -0.17 -0.85 16 23 C -0.12 -0.74 6.80 -25.61 -0.17 -0.91 16 24 C -0.14 -1.10 6.55 -25.08 -0.16 -1.27 16 25 N -0.54 -6.38 8.59 -12.96 -0.11 -6.49 16 26 C 0.17 1.99 10.71 -17.14 -0.18 1.80 16 27 C -0.03 -0.78 10.85 -17.03 -0.18 -0.97 16 28 N -0.26 -7.57 10.42 30.80 0.32 -7.25 16 29 H 0.28 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.15 2.79 8.06 -52.49 -0.42 2.36 16 31 H 0.40 5.23 6.88 -40.82 -0.28 4.95 16 32 H 0.16 1.80 7.73 -52.48 -0.41 1.39 16 33 H 0.15 1.23 8.06 -52.49 -0.42 0.80 16 34 H 0.10 0.97 6.95 -51.93 -0.36 0.61 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.16 1.45 6.41 -52.49 -0.34 1.12 16 44 H 0.18 4.55 5.91 -52.49 -0.31 4.24 16 LS Contribution 372.03 15.07 5.61 5.61 Total: -1.00 -33.51 372.03 -7.98 -41.49 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -5.47 Total: 9.93 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -3.75 Total: -7.04 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: 0.76 Total: -49.23 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.11 Total: -14.55 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.02 Total: 13.79 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.51 -7.98 -41.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781957310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.889 kcal (2) G-P(sol) polarization free energy of solvation -33.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds