Wall clock time and date at job start Wed Apr 1 2020 01:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 110.89079 * 2 1 4 4 C 1.34774 * 119.99432 * 62.42750 * 3 2 1 5 5 O 1.21631 * 120.00363 * 359.97438 * 4 3 2 6 6 C 1.47150 * 119.99380 * 179.97438 * 4 3 2 7 7 C 1.37892 * 120.51796 * 359.97438 * 6 4 3 8 8 N 1.34158 * 122.25255 * 180.02562 * 7 6 4 9 9 H 0.96995 * 118.68808 * 180.02562 * 8 7 6 10 10 C 1.37274 * 122.62417 * 359.94570 * 8 7 6 11 11 C 1.39509 * 121.53210 * 179.76033 * 10 8 7 12 12 C 1.37760 * 118.83020 * 179.82443 * 11 10 8 13 13 N 1.32239 * 121.59389 * 0.47259 * 12 11 10 14 14 C 1.31762 * 122.17304 * 359.76268 * 13 12 11 15 15 C 1.39246 * 120.00057 * 359.97438 * 14 13 12 16 16 C 1.47261 * 120.51208 * 179.97438 * 6 4 3 17 17 O 1.21846 * 121.48180 * 359.96421 * 16 6 4 18 18 C 1.55161 * 111.03612 * 236.09605 * 2 1 3 19 19 C 1.54320 * 102.94084 * 206.41449 * 18 2 1 20 20 N 1.47014 * 107.27661 * 22.19249 * 19 18 2 21 21 C 1.36932 * 125.65393 * 181.02415 * 20 19 18 22 22 H 1.08000 * 120.00305 * 173.97521 * 21 20 19 23 23 C 1.38814 * 119.99921 * 353.98401 * 21 20 19 24 24 N 1.31623 * 120.00002 * 6.84012 * 23 21 20 25 25 Si 1.86794 * 120.00287 * 186.84788 * 23 21 20 26 26 H 1.48503 * 109.47555 * 94.97882 * 25 23 21 27 27 H 1.48499 * 109.47220 * 214.98111 * 25 23 21 28 28 H 1.48501 * 109.47017 * 334.98219 * 25 23 21 29 29 C 1.47428 * 108.70289 * 1.06003 * 20 19 18 30 30 H 1.09004 * 109.47063 * 60.69848 * 1 2 3 31 31 H 1.08991 * 109.47780 * 180.69740 * 1 2 3 32 32 H 1.08999 * 109.46968 * 300.70202 * 1 2 3 33 33 H 0.96994 * 119.99723 * 242.42732 * 3 2 1 34 34 H 1.07997 * 118.87307 * 0.03904 * 7 6 4 35 35 H 1.08001 * 120.58348 * 0.26293 * 11 10 8 36 36 H 1.08005 * 119.20040 * 180.22987 * 12 11 10 37 37 H 1.08003 * 120.00241 * 180.02562 * 14 13 12 38 38 H 1.09004 * 110.71612 * 324.77708 * 18 2 1 39 39 H 1.08997 * 110.72159 * 88.04364 * 18 2 1 40 40 H 1.09004 * 109.88005 * 262.77124 * 19 18 2 41 41 H 1.09008 * 110.01189 * 141.68549 * 19 18 2 42 42 H 0.96993 * 119.99964 * 180.02562 * 24 23 21 43 43 H 1.08995 * 110.36841 * 217.03768 * 29 20 19 44 44 H 1.08999 * 110.45859 * 94.75522 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0524 1.3687 0.0000 4 6 1.7879 2.1908 1.0347 5 8 1.1151 1.7966 1.9682 6 6 2.3131 3.5654 1.0349 7 6 3.0773 4.0232 -0.0176 8 7 3.5739 5.2690 -0.0531 9 1 4.1049 5.5369 -0.8193 10 6 3.3593 6.1801 0.9510 11 6 3.8910 7.4686 0.8928 12 6 3.6375 8.3393 1.9299 13 7 2.9137 7.9785 2.9761 14 6 2.3912 6.7739 3.0861 15 6 2.5937 5.8327 2.0801 16 6 2.0306 4.4735 2.1593 17 8 1.3600 4.1171 3.1121 18 6 2.0869 -0.8078 -1.2020 19 6 3.4682 -1.2733 -0.6952 20 7 3.4274 -1.2422 0.7741 21 6 4.4641 -1.5652 1.6083 22 1 4.3661 -1.4175 2.6737 23 6 5.6411 -2.0824 1.0847 24 7 5.8132 -2.1370 -0.2190 25 14 6.9805 -2.7011 2.2303 26 1 6.8349 -4.1673 2.4160 27 1 8.3112 -2.4066 1.6407 28 1 6.8602 -2.0214 3.5452 29 6 2.0852 -0.8063 1.2006 30 1 -0.3633 0.5030 -0.8962 31 1 -0.3634 -1.0275 0.0125 32 1 -0.3633 0.5247 0.8836 33 1 2.5886 1.6831 -0.7446 34 1 3.2830 3.3561 -0.8416 35 1 4.4848 7.7803 0.0463 36 1 4.0431 9.3395 1.8892 37 1 1.8052 6.5168 3.9561 38 1 1.4480 -1.6634 -1.4208 39 1 2.1929 -0.1699 -2.0794 40 1 4.2432 -0.5986 -1.0589 41 1 3.6691 -2.2881 -1.0390 42 1 6.6355 -2.4988 -0.5849 43 1 2.1553 -0.1715 2.0839 44 1 1.4511 -1.6693 1.4038 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046355699.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:46 Heat of formation + Delta-G solvation = 21.851732 kcal Electronic energy + Delta-G solvation = -29892.278226 eV Core-core repulsion = 25810.887533 eV Total energy + Delta-G solvation = -4081.390693 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.148 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.64799 -39.81132 -38.54705 -38.11457 -36.91265 -33.92303 -32.96049 -31.89907 -31.66928 -30.74828 -29.64399 -28.63143 -25.64716 -25.10898 -25.04747 -23.62540 -22.92958 -21.68442 -20.25629 -19.31226 -19.16199 -18.81621 -17.98455 -16.95042 -16.29357 -16.07730 -15.65649 -15.58142 -15.48128 -15.10058 -14.59530 -14.52523 -14.42291 -13.94945 -13.72482 -13.47922 -13.42828 -13.27041 -13.09376 -12.71191 -12.35915 -12.02443 -11.87043 -11.74403 -11.60804 -10.90837 -10.85273 -10.39083 -10.35704 -10.30426 -10.19478 -10.05282 -9.99118 -9.67114 -9.64390 -9.62190 -9.05364 -8.59323 -8.52004 -8.27363 -6.76378 -5.70813 -3.00479 0.26261 0.35445 1.25902 2.27139 2.61583 3.32789 3.41410 3.42194 3.47717 3.49821 3.82772 3.88184 3.98956 4.14092 4.29137 4.47835 4.53401 4.54443 4.95575 5.02036 5.09089 5.18968 5.31783 5.39908 5.45951 5.48132 5.63992 5.74615 5.77726 6.03193 6.06294 6.15813 6.19627 6.32300 6.39784 6.41449 6.47164 6.59713 6.73922 6.92421 7.21140 7.51567 7.53361 7.60573 7.75505 7.82208 7.95606 8.28186 8.72357 9.25970 9.86069 10.52784 11.41859 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.012067 B = 0.003311 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.914008 B = 8455.137529 C = 9439.291246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.160 3.840 3 N -0.706 5.706 4 C 0.577 3.423 5 O -0.511 6.511 6 C -0.301 4.301 7 C 0.200 3.800 8 N -0.595 5.595 9 H 0.424 0.576 10 C 0.225 3.775 11 C -0.224 4.224 12 C 0.147 3.853 13 N -0.510 5.510 14 C 0.196 3.804 15 C -0.241 4.241 16 C 0.437 3.563 17 O -0.438 6.438 18 C -0.146 4.146 19 C 0.178 3.822 20 N -0.603 5.603 21 C -0.218 4.218 22 H 0.076 0.924 23 C -0.010 4.010 24 N -0.925 5.925 25 Si 0.907 3.093 26 H -0.289 1.289 27 H -0.293 1.293 28 H -0.281 1.281 29 C 0.129 3.871 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.388 0.612 34 H 0.172 0.828 35 H 0.146 0.854 36 H 0.164 0.836 37 H 0.175 0.825 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.039 0.961 41 H 0.046 0.954 42 H 0.250 0.750 43 H 0.058 0.942 44 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.781 20.204 -7.356 22.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.074 3.926 3 N -0.358 5.358 4 C 0.363 3.637 5 O -0.386 6.386 6 C -0.313 4.313 7 C 0.069 3.931 8 N -0.203 5.203 9 H 0.262 0.738 10 C 0.114 3.886 11 C -0.247 4.247 12 C -0.007 4.007 13 N -0.220 5.220 14 C 0.036 3.964 15 C -0.248 4.248 16 C 0.316 3.684 17 O -0.314 6.314 18 C -0.185 4.185 19 C 0.053 3.947 20 N -0.329 5.329 21 C -0.347 4.347 22 H 0.094 0.906 23 C -0.205 4.205 24 N -0.573 5.573 25 Si 0.738 3.262 26 H -0.217 1.217 27 H -0.219 1.219 28 H -0.207 1.207 29 C 0.003 3.997 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.222 0.778 34 H 0.188 0.812 35 H 0.164 0.836 36 H 0.181 0.819 37 H 0.192 0.808 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -5.579 20.230 -5.455 21.682 hybrid contribution 1.774 -0.745 -1.163 2.248 sum -3.804 19.484 -6.617 20.926 Atomic orbital electron populations 1.21993 0.94373 1.02140 1.02314 1.21449 0.92523 0.80517 0.98157 1.45694 1.54941 1.12952 1.22192 1.17206 0.80540 0.83341 0.82632 1.90815 1.38178 1.75470 1.34111 1.22214 1.11592 0.98321 0.99144 1.22119 0.88689 0.84478 0.97800 1.40721 1.48460 1.10174 1.20991 0.73832 1.17994 0.93123 0.89649 0.87793 1.21695 1.06933 0.92512 1.03610 1.22755 0.91113 0.99288 0.87501 1.67880 1.11087 1.18490 1.24586 1.23004 0.91187 0.86322 0.95869 1.21296 1.06534 0.99641 0.97317 1.19164 0.79092 0.84600 0.85540 1.90770 1.31785 1.76809 1.31994 1.23221 1.00534 0.98924 0.95773 1.21144 0.89804 0.99914 0.83861 1.44435 1.07638 1.79096 1.01694 1.19102 0.91853 1.34149 0.89557 0.90566 1.24755 0.98128 1.01661 0.95989 1.69957 1.26326 1.51640 1.09403 0.86148 0.81205 0.78977 0.79839 1.21653 1.21930 1.20671 1.21916 0.87394 0.94978 0.95442 0.93222 0.91857 0.90884 0.77774 0.81151 0.83597 0.81856 0.80764 0.90814 0.91941 0.94249 0.93561 0.93992 0.92423 0.95640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.62 37.16 0.32 -2.01 16 2 C 0.16 2.82 0.82 -129.67 -0.11 2.71 16 3 N -0.71 -11.16 5.12 -46.76 -0.24 -11.39 16 4 C 0.58 10.25 7.15 -12.64 -0.09 10.16 16 5 O -0.51 -11.25 12.33 -14.85 -0.18 -11.44 16 6 C -0.30 -4.32 6.05 -102.74 -0.62 -4.94 16 7 C 0.20 1.77 10.65 -16.66 -0.18 1.59 16 8 N -0.59 -3.76 5.21 -10.39 -0.05 -3.82 16 9 H 0.42 0.90 8.76 -40.82 -0.36 0.54 16 10 C 0.22 1.94 6.68 -84.00 -0.56 1.38 16 11 C -0.22 -1.37 9.99 -39.28 -0.39 -1.76 16 12 C 0.15 1.06 11.13 -17.55 -0.20 0.87 16 13 N -0.51 -5.31 10.34 -13.04 -0.13 -5.44 16 14 C 0.20 2.26 10.86 -17.21 -0.19 2.07 16 15 C -0.24 -2.93 5.89 -104.86 -0.62 -3.55 16 16 C 0.44 6.94 7.15 -32.22 -0.23 6.71 16 17 O -0.44 -8.66 15.92 -15.04 -0.24 -8.90 16 18 C -0.15 -2.49 5.99 -24.90 -0.15 -2.64 16 19 C 0.18 4.09 5.37 -3.07 -0.02 4.07 16 20 N -0.60 -15.45 3.39 -170.07 -0.58 -16.03 16 21 C -0.22 -6.22 10.26 -15.06 -0.15 -6.38 16 22 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 23 C -0.01 -0.28 5.48 -17.43 -0.10 -0.37 16 24 N -0.92 -26.65 10.36 55.49 0.57 -26.07 16 25 Si 0.91 22.47 29.56 -169.99 -5.02 17.45 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 29 C 0.13 2.91 6.11 -2.52 -0.02 2.89 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 32 H 0.07 1.28 6.45 -51.93 -0.33 0.95 16 33 H 0.39 4.84 6.49 -40.82 -0.27 4.58 16 34 H 0.17 0.97 6.30 -52.49 -0.33 0.63 16 35 H 0.15 0.36 8.06 -52.49 -0.42 -0.07 16 36 H 0.16 0.64 8.06 -52.48 -0.42 0.21 16 37 H 0.18 1.93 7.83 -52.48 -0.41 1.52 16 38 H 0.07 1.19 8.04 -51.93 -0.42 0.78 16 39 H 0.06 0.88 8.05 -51.93 -0.42 0.46 16 40 H 0.04 0.97 7.54 -51.93 -0.39 0.58 16 41 H 0.05 1.20 7.36 -51.92 -0.38 0.82 16 42 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.06 1.44 6.31 -51.93 -0.33 1.11 16 44 H 0.03 0.58 8.03 -51.93 -0.42 0.16 16 LS Contribution 361.46 15.07 5.45 5.45 Total: -1.00 -39.02 361.46 -9.01 -48.03 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.29 Total: 1.37 kcal Atomic # 6 Polarization: 14.09 SS G_CDS: -3.29 Total: 10.80 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: -0.43 Total: -62.75 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.42 Total: -20.34 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -39.02 -9.01 -48.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046355699.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.880 kcal (2) G-P(sol) polarization free energy of solvation -39.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds