Wall clock time and date at job start Wed Apr 1 2020 01:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 110.64267 * 2 1 4 4 C 1.34778 * 120.00282 * 298.31371 * 3 2 1 5 5 O 1.21637 * 119.99649 * 359.97438 * 4 3 2 6 6 C 1.47142 * 120.00429 * 179.97438 * 4 3 2 7 7 C 1.37900 * 120.50968 * 0.33249 * 6 4 3 8 8 N 1.34160 * 122.24354 * 180.32731 * 7 6 4 9 9 H 0.96995 * 118.68860 * 179.67019 * 8 7 6 10 10 C 1.37274 * 122.62444 * 359.64434 * 8 7 6 11 11 C 1.39510 * 121.52266 * 180.02562 * 10 8 7 12 12 C 1.37757 * 118.83076 * 179.97438 * 11 10 8 13 13 N 1.32249 * 121.59113 * 0.02562 * 12 11 10 14 14 C 1.31764 * 122.17629 * 359.96718 * 13 12 11 15 15 C 1.39252 * 119.99768 * 0.05303 * 14 13 12 16 16 C 1.47257 * 120.51448 * 180.02562 * 6 4 3 17 17 O 1.21837 * 121.48226 * 359.97438 * 16 6 4 18 18 C 1.55157 * 110.87616 * 123.24799 * 2 1 3 19 19 C 1.54904 * 101.58288 * 153.93546 * 18 2 1 20 20 N 1.47427 * 104.83723 * 322.99578 * 19 18 2 21 21 C 1.36932 * 125.64976 * 204.09384 * 20 19 18 22 22 H 1.08004 * 119.99729 * 169.97285 * 21 20 19 23 23 C 1.38810 * 120.00122 * 349.98372 * 21 20 19 24 24 N 1.31618 * 119.99792 * 350.41378 * 23 21 20 25 25 Si 1.86807 * 120.00110 * 170.42385 * 23 21 20 26 26 H 1.48500 * 109.47178 * 94.13316 * 25 23 21 27 27 H 1.48497 * 109.47044 * 214.13570 * 25 23 21 28 28 H 1.48496 * 109.46697 * 334.13526 * 25 23 21 29 29 C 1.47017 * 108.69973 * 24.12476 * 20 19 18 30 30 H 1.08999 * 109.47271 * 59.29910 * 1 2 3 31 31 H 1.09003 * 109.47274 * 179.29480 * 1 2 3 32 32 H 1.08999 * 109.47470 * 299.29757 * 1 2 3 33 33 H 0.97004 * 120.00375 * 118.30958 * 3 2 1 34 34 H 1.07998 * 118.88085 * 359.97398 * 7 6 4 35 35 H 1.07998 * 120.58532 * 0.02562 * 11 10 8 36 36 H 1.08000 * 119.20654 * 180.02562 * 12 11 10 37 37 H 1.08001 * 120.00396 * 180.02562 * 14 13 12 38 38 H 1.09000 * 111.00544 * 272.01277 * 18 2 1 39 39 H 1.09008 * 110.99815 * 35.86391 * 18 2 1 40 40 H 1.09005 * 110.36725 * 204.15215 * 19 18 2 41 41 H 1.08998 * 110.36564 * 81.83277 * 19 18 2 42 42 H 0.97002 * 120.00038 * 180.02562 * 24 23 21 43 43 H 1.09004 * 109.88702 * 239.52634 * 29 20 19 44 44 H 1.08996 * 110.01304 * 118.43281 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0464 1.3709 0.0000 4 6 1.7659 2.1968 -1.0275 5 8 1.0844 1.8036 -1.9551 6 6 2.2842 3.5739 -1.0273 7 6 3.0636 4.0285 0.0156 8 7 3.5487 5.2787 0.0545 9 1 4.0876 5.5455 0.8156 10 6 3.3135 6.1952 -0.9400 11 6 3.8300 7.4895 -0.8762 12 6 3.5598 8.3641 -1.9056 13 7 2.8256 8.0048 -2.9453 14 6 2.3128 6.7963 -3.0580 15 6 2.5365 5.8493 -2.0618 16 6 1.9842 4.4859 -2.1439 17 8 1.3055 4.1303 -3.0911 18 6 2.0828 -0.7948 1.2124 19 6 3.4673 -1.2454 0.6836 20 7 3.2471 -1.5460 -0.7428 21 6 4.0078 -2.3899 -1.5073 22 1 3.6747 -2.6710 -2.4955 23 6 5.2067 -2.8841 -1.0121 24 7 5.7064 -2.4005 0.1054 25 14 6.1110 -4.2353 -1.9319 26 1 7.1218 -3.6285 -2.8348 27 1 6.7893 -5.1283 -0.9584 28 1 5.1406 -5.0232 -2.7336 29 6 2.0761 -0.7891 -1.2086 30 1 -0.3634 0.5247 -0.8836 31 1 -0.3634 -1.0276 -0.0126 32 1 -0.3634 0.5029 0.8962 33 1 2.5902 1.6844 0.7396 34 1 3.2864 3.3569 0.8315 35 1 4.4319 7.8001 -0.0350 36 1 3.9569 9.3675 -1.8626 37 1 1.7186 6.5402 -3.9227 38 1 2.1887 -0.1515 2.0859 39 1 1.4514 -1.6547 1.4365 40 1 3.8031 -2.1378 1.2120 41 1 4.1954 -0.4418 0.7939 42 1 6.5443 -2.7456 0.4513 43 1 1.3140 -1.4753 -1.5782 44 1 2.3686 -0.0992 -2.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046355700.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:49 Heat of formation + Delta-G solvation = 21.638208 kcal Electronic energy + Delta-G solvation = -29698.000332 eV Core-core repulsion = 25616.600379 eV Total energy + Delta-G solvation = -4081.399952 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.148 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.68748 -39.87540 -38.58663 -38.15648 -36.94989 -33.97654 -32.99154 -31.92482 -31.69791 -30.78714 -29.62094 -28.65813 -25.67947 -25.14449 -25.08353 -23.59790 -22.96759 -21.67701 -20.41175 -19.32180 -19.16119 -18.87674 -18.02648 -16.92821 -16.34850 -16.11515 -15.69637 -15.63922 -15.50277 -15.13338 -14.63646 -14.55527 -14.44492 -13.98217 -13.75347 -13.51685 -13.42450 -13.27296 -13.08073 -12.69774 -12.39218 -12.19477 -11.94630 -11.66302 -11.56492 -10.95682 -10.79178 -10.41598 -10.38273 -10.33820 -10.23372 -10.07760 -9.99577 -9.71952 -9.67542 -9.63813 -9.10271 -8.61840 -8.54883 -8.32259 -6.74749 -5.73102 -3.03051 0.22649 0.31491 1.21757 2.22843 2.57572 3.28023 3.37388 3.41743 3.47414 3.50358 3.78266 3.82881 3.95486 4.10717 4.25383 4.43151 4.50575 4.53252 4.91635 4.98840 5.08530 5.15565 5.28916 5.38280 5.41371 5.49436 5.57971 5.72611 5.76196 6.00120 6.06539 6.18034 6.21631 6.28261 6.34677 6.43057 6.44112 6.56670 6.75075 6.92968 7.21431 7.45847 7.50361 7.53429 7.71655 7.79090 7.89373 8.28632 8.66544 9.23308 9.84940 10.52589 11.40694 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.014439 B = 0.002888 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.678265 B = 9693.304152 C =10273.988730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.164 3.836 3 N -0.712 5.712 4 C 0.575 3.425 5 O -0.508 6.508 6 C -0.302 4.302 7 C 0.200 3.800 8 N -0.595 5.595 9 H 0.425 0.575 10 C 0.224 3.776 11 C -0.224 4.224 12 C 0.147 3.853 13 N -0.510 5.510 14 C 0.196 3.804 15 C -0.242 4.242 16 C 0.437 3.563 17 O -0.438 6.438 18 C -0.148 4.148 19 C 0.175 3.825 20 N -0.603 5.603 21 C -0.220 4.220 22 H 0.075 0.925 23 C -0.010 4.010 24 N -0.923 5.923 25 Si 0.909 3.091 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.280 1.280 29 C 0.134 3.866 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.388 0.612 34 H 0.172 0.828 35 H 0.147 0.853 36 H 0.165 0.835 37 H 0.176 0.824 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.023 0.977 42 H 0.251 0.749 43 H 0.031 0.969 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.896 21.618 7.653 23.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.079 3.921 3 N -0.365 5.365 4 C 0.361 3.639 5 O -0.382 6.382 6 C -0.314 4.314 7 C 0.069 3.931 8 N -0.203 5.203 9 H 0.262 0.738 10 C 0.114 3.886 11 C -0.247 4.247 12 C -0.006 4.006 13 N -0.220 5.220 14 C 0.036 3.964 15 C -0.248 4.248 16 C 0.316 3.684 17 O -0.313 6.313 18 C -0.187 4.187 19 C 0.050 3.950 20 N -0.329 5.329 21 C -0.349 4.349 22 H 0.093 0.907 23 C -0.206 4.206 24 N -0.571 5.571 25 Si 0.740 3.260 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.206 1.206 29 C 0.008 3.992 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.222 0.778 34 H 0.189 0.811 35 H 0.164 0.836 36 H 0.182 0.818 37 H 0.193 0.807 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.041 0.959 42 H 0.061 0.939 43 H 0.048 0.952 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.758 21.610 5.757 22.864 hybrid contribution 1.583 -0.995 1.193 2.218 sum -3.176 20.615 6.950 21.986 Atomic orbital electron populations 1.22040 0.94245 1.02240 1.02319 1.21279 0.92942 0.80138 0.97780 1.45874 1.54666 1.12939 1.23007 1.17238 0.80681 0.83369 0.82623 1.90835 1.37557 1.75618 1.34214 1.22215 1.11322 0.98263 0.99611 1.22127 0.88832 0.84537 0.97588 1.40723 1.48217 1.09705 1.21694 0.73806 1.17992 0.93120 0.89599 0.87884 1.21697 1.07010 0.92325 1.03685 1.22764 0.90982 0.99370 0.87515 1.67887 1.11144 1.18566 1.24403 1.23011 0.91305 0.86292 0.95756 1.21296 1.06369 0.99557 0.97569 1.19160 0.79196 0.84666 0.85402 1.90773 1.31398 1.77095 1.32016 1.23350 1.01116 0.99047 0.95169 1.21375 0.89398 0.99300 0.84937 1.44483 1.30865 1.50828 1.06729 1.19061 0.99410 1.18096 0.98308 0.90669 1.24771 0.96841 1.00767 0.98210 1.69937 1.20567 1.44146 1.22449 0.86132 0.79598 0.81678 0.78591 1.21728 1.21692 1.20582 1.21635 0.90309 0.93167 0.94113 0.90838 0.91774 0.93208 0.77770 0.81114 0.83573 0.81829 0.80746 0.91900 0.90490 0.91232 0.95894 0.93931 0.95150 0.94446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 8.45 37.15 0.31 -2.07 16 2 C 0.16 2.91 0.81 -129.99 -0.11 2.80 16 3 N -0.71 -10.96 5.09 -47.06 -0.24 -11.20 16 4 C 0.57 9.99 6.98 -12.65 -0.09 9.90 16 5 O -0.51 -11.08 12.47 -14.86 -0.19 -11.27 16 6 C -0.30 -4.18 6.05 -102.74 -0.62 -4.80 16 7 C 0.20 1.64 10.65 -16.66 -0.18 1.46 16 8 N -0.59 -3.43 5.21 -10.38 -0.05 -3.48 16 9 H 0.42 0.65 8.76 -40.82 -0.36 0.30 16 10 C 0.22 1.83 6.68 -84.00 -0.56 1.27 16 11 C -0.22 -1.27 9.99 -39.28 -0.39 -1.67 16 12 C 0.15 1.01 11.13 -17.55 -0.20 0.82 16 13 N -0.51 -5.13 10.34 -13.04 -0.13 -5.27 16 14 C 0.20 2.19 10.86 -17.20 -0.19 2.00 16 15 C -0.24 -2.83 5.89 -104.86 -0.62 -3.45 16 16 C 0.44 6.75 7.15 -32.22 -0.23 6.52 16 17 O -0.44 -8.50 15.92 -15.03 -0.24 -8.74 16 18 C -0.15 -2.54 6.09 -24.59 -0.15 -2.69 16 19 C 0.18 4.02 5.40 -2.53 -0.01 4.00 16 20 N -0.60 -15.63 3.39 -170.07 -0.58 -16.21 16 21 C -0.22 -6.31 10.24 -15.06 -0.15 -6.46 16 22 H 0.08 2.14 7.85 -52.48 -0.41 1.73 16 23 C -0.01 -0.29 5.40 -17.43 -0.09 -0.38 16 24 N -0.92 -26.69 10.68 55.49 0.59 -26.10 16 25 Si 0.91 22.41 29.57 -169.99 -5.03 17.39 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 29 C 0.13 3.06 6.13 -3.06 -0.02 3.04 16 30 H 0.07 1.31 6.38 -51.93 -0.33 0.98 16 31 H 0.06 0.98 8.12 -51.93 -0.42 0.55 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.39 4.56 6.47 -40.82 -0.26 4.30 16 34 H 0.17 0.83 6.30 -52.49 -0.33 0.50 16 35 H 0.15 0.29 8.06 -52.49 -0.42 -0.13 16 36 H 0.16 0.58 8.06 -52.49 -0.42 0.16 16 37 H 0.18 1.87 7.83 -52.49 -0.41 1.46 16 38 H 0.06 0.87 8.04 -51.93 -0.42 0.45 16 39 H 0.08 1.30 8.05 -51.92 -0.42 0.88 16 40 H 0.07 1.79 6.94 -51.93 -0.36 1.43 16 41 H 0.02 0.56 8.07 -51.93 -0.42 0.14 16 42 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.03 0.71 7.80 -51.93 -0.41 0.30 16 44 H 0.04 0.96 6.47 -51.93 -0.34 0.62 16 LS Contribution 361.55 15.07 5.45 5.45 Total: -1.00 -39.43 361.55 -8.99 -48.42 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -5.29 Total: 0.71 kcal Atomic # 6 Polarization: 13.60 SS G_CDS: -3.29 Total: 10.31 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: -0.41 Total: -62.27 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.42 Total: -20.01 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.03 Total: 17.39 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -39.43 -8.99 -48.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046355700.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.060 kcal (2) G-P(sol) polarization free energy of solvation -39.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds