Wall clock time and date at job start Wed Apr 1 2020 01:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34186 * 125.43853 * 2 1 4 4 C 1.47022 * 105.95158 * 180.13939 * 3 2 1 5 5 C 1.47379 * 127.19201 * 179.82785 * 4 3 2 6 6 O 1.21616 * 119.99949 * 179.68796 * 5 4 3 7 7 N 1.34778 * 119.99650 * 359.68417 * 5 4 3 8 8 C 1.46498 * 119.99598 * 179.97438 * 7 5 4 9 9 C 1.53005 * 109.47090 * 179.97438 * 8 7 5 10 10 H 1.09003 * 109.49185 * 54.93825 * 9 8 7 11 11 C 1.52757 * 109.56603 * 294.97017 * 9 8 7 12 12 N 1.46926 * 109.00733 * 185.55036 * 11 9 8 13 13 C 1.36936 * 120.62895 * 233.58294 * 12 11 9 14 14 H 1.08005 * 119.99839 * 27.20489 * 13 12 11 15 15 C 1.38807 * 120.00116 * 207.19766 * 13 12 11 16 16 N 1.31623 * 120.00040 * 17.81465 * 15 13 12 17 17 Si 1.86802 * 120.00415 * 197.81166 * 15 13 12 18 18 H 1.48497 * 109.47053 * 265.36017 * 17 15 13 19 19 H 1.48505 * 109.46961 * 25.35893 * 17 15 13 20 20 H 1.48502 * 109.47482 * 145.35682 * 17 15 13 21 21 C 1.46919 * 118.73874 * 53.30994 * 12 11 9 22 22 C 1.53196 * 108.77664 * 306.64383 * 21 12 11 23 23 C 1.53033 * 109.31225 * 54.63354 * 22 21 12 24 24 F 1.39901 * 109.46238 * 58.65895 * 23 22 21 25 25 F 1.39901 * 109.46185 * 178.63027 * 23 22 21 26 26 C 1.36421 * 105.61549 * 359.56848 * 4 3 2 27 27 C 1.50705 * 125.79939 * 180.26067 * 26 4 3 28 28 O 1.33644 * 108.39573 * 0.26479 * 26 4 3 29 29 H 1.09000 * 109.47560 * 180.31771 * 1 2 3 30 30 H 1.09000 * 109.47351 * 300.32528 * 1 2 3 31 31 H 1.09005 * 109.46675 * 60.32023 * 1 2 3 32 32 H 1.07996 * 127.02212 * 359.96789 * 3 2 1 33 33 H 0.96998 * 120.00181 * 0.02562 * 7 5 4 34 34 H 1.09005 * 109.47058 * 60.00871 * 8 7 5 35 35 H 1.08993 * 109.47669 * 300.00136 * 8 7 5 36 36 H 1.09000 * 109.50937 * 65.66761 * 11 9 8 37 37 H 1.09002 * 109.43525 * 305.38459 * 11 9 8 38 38 H 0.97000 * 119.99840 * 180.02562 * 16 15 13 39 39 H 1.08997 * 109.58841 * 66.43041 * 21 12 11 40 40 H 1.09002 * 109.58864 * 186.85624 * 21 12 11 41 41 H 1.09000 * 109.49474 * 174.58993 * 22 21 12 42 42 H 1.09000 * 109.49469 * 294.67986 * 22 21 12 43 43 H 1.08998 * 109.46850 * 90.00117 * 27 26 4 44 44 H 1.09001 * 109.47038 * 210.00327 * 27 26 4 45 45 H 1.08999 * 109.47100 * 329.99636 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2850 1.0933 0.0000 4 6 3.6710 0.6028 -0.0034 5 6 4.9025 1.4124 -0.0083 6 8 5.9892 0.8664 -0.0050 7 7 4.8243 2.7579 -0.0164 8 6 6.0485 3.5626 -0.0206 9 6 5.6822 5.0482 -0.0304 10 1 5.0214 5.2654 0.8089 11 6 4.9707 5.3911 -1.3379 12 7 4.7438 6.8417 -1.3930 13 6 3.4895 7.3436 -1.6171 14 1 2.6197 6.7720 -1.3285 15 6 3.3361 8.5869 -2.2149 16 7 4.3373 9.1267 -2.8773 17 14 1.7087 9.4939 -2.0796 18 1 0.8785 9.2021 -3.2758 19 1 0.9923 9.0458 -0.8585 20 1 1.9616 10.9549 -1.9970 21 6 5.8870 7.7435 -1.1972 22 6 6.5872 7.3742 0.1144 23 6 6.9552 5.8890 0.0909 24 9 7.7890 5.6325 -1.0028 25 9 7.6228 5.5554 1.2742 26 6 3.5789 -0.7583 0.0047 27 6 4.7389 -1.7203 0.0105 28 8 2.2852 -1.0935 0.0066 29 1 -0.3634 -1.0276 0.0057 30 1 -0.3634 0.5189 0.8870 31 1 -0.3633 0.5089 -0.8929 32 1 1.9595 2.1230 -0.0005 33 1 3.9576 3.1934 -0.0187 34 1 6.6347 3.3276 -0.9090 35 1 6.6339 3.3383 0.8709 36 1 4.0144 4.8697 -1.3796 37 1 5.5924 5.0863 -2.1798 38 1 4.2301 9.9957 -3.2947 39 1 6.5849 7.6344 -2.0273 40 1 5.5350 8.7739 -1.1459 41 1 7.4923 7.9716 0.2242 42 1 5.9177 7.5701 0.9519 43 1 5.0185 -1.9460 1.0396 44 1 4.4505 -2.6403 -0.4979 45 1 5.5867 -1.2703 -0.5060 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046918521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:59 Heat of formation + Delta-G solvation = -113.076375 kcal Electronic energy + Delta-G solvation = -30654.644784 eV Core-core repulsion = 26116.713983 eV Total energy + Delta-G solvation = -4537.930801 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.154 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.53110 -46.48172 -42.75545 -39.42383 -37.37508 -35.02089 -33.42156 -33.04016 -32.62529 -30.91210 -30.24719 -29.57256 -26.23510 -25.27885 -24.93824 -23.18884 -22.37196 -21.60417 -20.81621 -19.85607 -19.39188 -17.52655 -17.00897 -16.80396 -16.66135 -16.25779 -15.83609 -15.45344 -15.30754 -15.23844 -14.76984 -14.32342 -14.06782 -13.71404 -13.62494 -13.56497 -13.33304 -13.19132 -13.09530 -13.04847 -12.87704 -12.80182 -12.77606 -12.58185 -12.22412 -11.76642 -11.69729 -11.60345 -11.55543 -11.25943 -10.83543 -10.63607 -10.55799 -10.08383 -10.01716 -9.93066 -9.90165 -9.66103 -9.00650 -8.63175 -8.52730 -6.92359 -5.95805 -3.39437 1.24627 1.85358 2.52627 3.20458 3.27918 3.36008 3.36263 3.37249 4.20140 4.26421 4.35559 4.59441 4.63289 4.67407 4.75004 4.89752 4.97354 5.10097 5.17991 5.19428 5.26379 5.27635 5.33431 5.40894 5.43578 5.50805 5.58430 5.65167 5.76582 5.91448 5.98573 6.02748 6.14140 6.17758 6.25485 6.31663 6.42206 6.45010 6.68415 6.89310 7.08648 7.42995 7.55749 7.63087 8.24385 8.25795 9.00805 9.63658 10.18849 11.13513 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.010154 B = 0.003456 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.769592 B = 8098.889321 C =10411.556283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.014 4.014 3 C -0.184 4.184 4 C -0.239 4.239 5 C 0.590 3.410 6 O -0.545 6.545 7 N -0.714 5.714 8 C 0.127 3.873 9 C -0.155 4.155 10 H 0.101 0.899 11 C 0.153 3.847 12 N -0.590 5.590 13 C -0.262 4.262 14 H 0.069 0.931 15 C 0.007 3.993 16 N -0.898 5.898 17 Si 0.904 3.096 18 H -0.286 1.286 19 H -0.278 1.278 20 H -0.288 1.288 21 C 0.170 3.830 22 C -0.179 4.179 23 C 0.301 3.699 24 F -0.199 7.199 25 F -0.213 7.213 26 C 0.074 3.926 27 C -0.081 4.081 28 O -0.176 6.176 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.158 0.842 33 H 0.404 0.596 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.033 0.967 38 H 0.257 0.743 39 H 0.032 0.968 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.076 0.924 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.481 -15.528 7.277 17.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.063 4.063 3 C -0.204 4.204 4 C -0.244 4.244 5 C 0.378 3.622 6 O -0.425 6.425 7 N -0.366 5.366 8 C 0.003 3.997 9 C -0.177 4.177 10 H 0.120 0.880 11 C 0.026 3.974 12 N -0.312 5.312 13 C -0.391 4.391 14 H 0.087 0.913 15 C -0.192 4.192 16 N -0.542 5.542 17 Si 0.733 3.267 18 H -0.213 1.213 19 H -0.203 1.203 20 H -0.214 1.214 21 C 0.044 3.956 22 C -0.219 4.219 23 C 0.264 3.736 24 F -0.180 7.180 25 F -0.194 7.194 26 C 0.021 3.979 27 C -0.137 4.137 28 O -0.073 6.073 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.176 0.824 33 H 0.239 0.761 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.050 0.950 38 H 0.067 0.933 39 H 0.051 0.949 40 H 0.119 0.881 41 H 0.095 0.905 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.095 0.905 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.795 -16.011 7.167 17.764 hybrid contribution -1.029 1.008 0.073 1.442 sum -3.824 -15.003 7.240 17.092 Atomic orbital electron populations 1.20348 0.84655 1.04042 1.03981 1.22231 0.93988 0.83633 1.06419 1.22632 0.90716 0.99746 1.07273 1.21121 0.93809 0.93281 1.16174 1.17158 0.87349 0.81733 0.75936 1.90747 1.28795 1.71891 1.51080 1.45719 1.10165 1.05654 1.75021 1.21328 0.86616 0.88694 1.03100 1.22891 0.96551 0.93140 1.05082 0.88034 1.20821 0.97759 0.87444 0.91402 1.44080 1.05829 0.98513 1.82772 1.19143 0.83564 1.02202 1.34176 0.91334 1.25061 0.97505 0.99863 0.96819 1.70030 1.31544 1.18002 1.34587 0.86272 0.83217 0.79230 0.77977 1.21322 1.20309 1.21429 1.20845 0.88008 0.97252 0.89517 1.23271 1.02512 0.90870 1.05215 1.21019 0.84090 0.97607 0.70892 1.92968 1.74381 1.95531 1.55107 1.92957 1.83222 1.94217 1.49034 1.22752 0.82881 0.94034 0.98230 1.20605 0.92192 0.96571 1.04323 1.83695 1.16178 1.35700 1.71734 0.90577 0.89463 0.89350 0.82395 0.76116 0.90562 0.90924 0.91670 0.94955 0.93332 0.94944 0.88111 0.90516 0.89573 0.89440 0.90537 0.87191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.40 36.00 0.37 -0.10 16 2 C -0.01 -0.15 7.28 -35.74 -0.26 -0.41 16 3 C -0.18 -2.07 10.48 -37.45 -0.39 -2.46 16 4 C -0.24 -3.18 6.31 -103.27 -0.65 -3.83 16 5 C 0.59 8.92 7.81 -12.54 -0.10 8.82 16 6 O -0.55 -9.51 14.84 5.26 0.08 -9.44 16 7 N -0.71 -10.05 5.33 -61.40 -0.33 -10.38 16 8 C 0.13 1.96 4.83 -4.04 -0.02 1.94 16 9 C -0.16 -2.56 2.02 -90.72 -0.18 -2.74 16 10 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 11 C 0.15 2.94 5.38 -3.93 -0.02 2.92 16 12 N -0.59 -13.62 3.00 -172.59 -0.52 -14.14 16 13 C -0.26 -6.61 9.58 -15.06 -0.14 -6.75 16 14 H 0.07 1.66 7.89 -52.48 -0.41 1.25 16 15 C 0.01 0.18 4.90 -17.43 -0.09 0.09 16 16 N -0.90 -24.67 11.20 55.49 0.62 -24.05 16 17 Si 0.90 20.33 29.59 -169.99 -5.03 15.30 16 18 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 20 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 21 C 0.17 3.80 5.11 -3.71 -0.02 3.78 16 22 C -0.18 -3.26 5.62 -26.61 -0.15 -3.41 16 23 C 0.30 5.33 1.63 -26.69 -0.04 5.29 16 24 F -0.20 -3.83 15.73 2.25 0.04 -3.79 16 25 F -0.21 -3.70 16.40 2.25 0.04 -3.66 16 26 C 0.07 0.90 7.37 -34.96 -0.26 0.64 16 27 C -0.08 -0.79 9.89 36.01 0.36 -0.43 16 28 O -0.18 -2.04 10.52 7.68 0.08 -1.96 16 29 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.16 1.49 7.74 -52.49 -0.41 1.08 16 33 H 0.40 5.01 6.87 -40.82 -0.28 4.73 16 34 H 0.08 1.27 7.97 -51.93 -0.41 0.86 16 35 H 0.07 1.15 7.63 -51.93 -0.40 0.76 16 36 H 0.06 1.17 7.13 -51.93 -0.37 0.80 16 37 H 0.03 0.67 7.92 -51.93 -0.41 0.26 16 38 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 39 H 0.03 0.78 7.92 -51.93 -0.41 0.37 16 40 H 0.10 2.49 6.03 -51.93 -0.31 2.18 16 41 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 42 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 43 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.11 1.24 6.48 -51.93 -0.34 0.90 16 LS Contribution 373.60 15.07 5.63 5.63 Total: -1.00 -30.48 373.60 -7.26 -37.74 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -6.27 Total: 5.40 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -1.60 Total: 3.36 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: -0.22 Total: -48.57 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.16 Total: -11.40 kcal Atomic # 9 Polarization: -7.52 SS G_CDS: 0.07 Total: -7.45 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.03 Total: 15.30 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.48 -7.26 -37.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046918521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.337 kcal (2) G-P(sol) polarization free energy of solvation -30.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds