Wall clock time and date at job start Wed Apr 1 2020 01:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99874 * 2 1 4 4 H 1.48500 * 109.46941 * 274.98405 * 3 2 1 5 5 H 1.48501 * 109.47343 * 34.98422 * 3 2 1 6 6 H 1.48506 * 109.46998 * 154.98412 * 3 2 1 7 7 C 1.38811 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00077 * 187.30888 * 7 2 1 9 9 N 1.36936 * 120.00204 * 7.31383 * 7 2 1 10 10 C 1.46647 * 125.29158 * 175.35296 * 9 7 2 11 11 C 1.53516 * 107.05049 * 197.36285 * 10 9 7 12 12 H 1.09003 * 112.80335 * 211.54090 * 11 10 9 13 13 C 1.54788 * 109.69031 * 84.08466 * 11 10 9 14 14 C 1.54844 * 101.42234 * 212.87145 * 13 11 10 15 15 N 1.47344 * 104.90757 * 37.27835 * 14 13 11 16 16 C 1.34777 * 125.52351 * 156.70523 * 15 14 13 17 17 O 1.21576 * 119.99686 * 180.02562 * 16 15 14 18 18 C 1.47733 * 120.00339 * 0.02950 * 16 15 14 19 19 C 1.41226 * 126.34319 * 179.97438 * 18 16 15 20 20 C 1.36676 * 105.43832 * 179.97438 * 19 18 16 21 21 C 1.48067 * 126.59123 * 180.02562 * 20 19 18 22 22 C 1.46798 * 127.12304 * 180.02562 * 21 20 19 23 23 C 1.34346 * 106.02315 * 179.97438 * 22 21 20 24 24 O 1.34163 * 109.02697 * 359.97438 * 23 22 21 25 25 C 1.34094 * 110.76812 * 359.76738 * 24 23 22 26 26 N 1.36322 * 106.81331 * 0.02562 * 20 19 18 27 27 H 0.97003 * 125.00074 * 179.97438 * 26 20 19 28 28 N 1.28455 * 109.99575 * 359.74599 * 26 20 19 29 29 C 1.47264 * 108.95310 * 336.72665 * 15 14 13 30 30 H 1.08998 * 112.72744 * 236.14975 * 29 15 14 31 31 C 1.46490 * 125.28655 * 355.32787 * 9 7 2 32 32 H 0.97001 * 120.00191 * 0.02562 * 1 2 3 33 33 H 1.08999 * 109.91439 * 316.70744 * 10 9 7 34 34 H 1.08995 * 109.92124 * 78.00981 * 10 9 7 35 35 H 1.08994 * 111.02396 * 330.96850 * 13 11 10 36 36 H 1.09004 * 111.02756 * 94.87936 * 13 11 10 37 37 H 1.08998 * 110.36584 * 278.41409 * 14 13 11 38 38 H 1.09000 * 110.43118 * 156.17536 * 14 13 11 39 39 H 1.07999 * 127.28175 * 359.97438 * 19 18 16 40 40 H 1.07998 * 126.99114 * 359.97438 * 22 21 20 41 41 H 1.08003 * 125.48780 * 179.97438 * 23 22 21 42 42 H 1.08009 * 125.78456 * 180.24590 * 25 24 23 43 43 H 1.08999 * 109.71577 * 297.78880 * 31 9 7 44 44 H 1.09001 * 109.72043 * 58.38295 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5043 2.6200 0.8027 6 1 3.5965 1.4121 0.5921 7 6 2.0103 -1.2021 0.0005 8 1 3.0836 -1.2059 0.1195 9 7 1.3339 -2.3833 -0.1499 10 6 1.9552 -3.7069 -0.2630 11 6 0.8958 -4.6532 -0.8450 12 1 1.0029 -5.6777 -0.4887 13 6 0.8843 -4.5370 -2.3885 14 6 -0.6116 -4.7832 -2.7035 15 7 -1.3433 -4.1203 -1.6098 16 6 -2.6182 -3.6872 -1.6702 17 8 -3.1244 -3.1509 -0.7036 18 6 -3.4004 -3.8640 -2.9109 19 6 -4.7384 -3.4638 -3.1209 20 6 -5.0307 -3.8306 -4.4046 21 6 -6.3176 -3.6295 -5.1088 22 6 -6.6442 -4.0189 -6.4860 23 6 -7.9169 -3.6384 -6.6870 24 8 -8.3829 -3.0619 -5.5687 25 6 -7.4434 -3.0519 -4.6120 26 7 -3.9097 -4.4173 -4.9120 27 1 -3.8272 -4.7765 -5.8093 28 7 -2.9771 -4.4201 -4.0286 29 6 -0.4558 -4.0073 -0.4401 30 1 -0.8771 -4.4665 0.4541 31 6 -0.1227 -2.5211 -0.2224 32 1 -0.4850 0.8400 -0.0004 33 1 2.8156 -3.6573 -0.9303 34 1 2.2651 -4.0570 0.7216 35 1 1.1939 -3.5420 -2.7081 36 1 1.5107 -5.3046 -2.8431 37 1 -0.8269 -5.8517 -2.7106 38 1 -0.8770 -4.3373 -3.6620 39 1 -5.3924 -2.9720 -2.4161 40 1 -5.9937 -4.5111 -7.1938 41 1 -8.4751 -3.7748 -7.6015 42 1 -7.5604 -2.6503 -3.6162 43 1 -0.5714 -2.1764 0.7092 44 1 -0.5068 -1.9323 -1.0554 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076571663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:06 Heat of formation + Delta-G solvation = 102.865208 kcal Electronic energy + Delta-G solvation = -29461.002172 eV Core-core repulsion = 25383.124487 eV Total energy + Delta-G solvation = -4077.877685 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.91095 -42.35417 -39.81032 -37.57146 -34.81540 -33.94057 -32.30535 -31.78649 -30.99924 -30.51787 -29.07887 -28.47840 -26.74898 -24.57681 -23.89626 -23.12403 -22.18939 -21.71311 -20.53936 -20.30891 -19.42849 -18.93703 -18.30703 -17.19123 -16.76626 -16.39216 -16.28661 -15.74517 -15.34092 -15.14464 -14.88033 -14.40359 -13.95405 -13.92057 -13.49877 -13.37736 -13.30886 -13.15701 -12.66142 -12.57238 -12.47949 -12.07466 -11.66482 -11.43470 -11.05525 -10.94515 -10.88110 -10.86656 -10.71904 -10.29971 -10.08260 -9.94452 -9.77581 -9.63253 -9.59460 -9.48096 -9.36451 -8.48165 -8.41356 -8.05049 -6.71788 -5.60239 -2.95407 1.02756 1.59902 1.85495 2.58872 2.74613 2.77155 3.38229 3.46051 3.50543 3.53572 3.78279 4.11994 4.27436 4.52172 4.57584 4.62054 4.91941 5.03629 5.04804 5.14180 5.34782 5.40805 5.50724 5.57162 5.67123 5.69989 5.77046 5.79341 5.90291 5.91193 6.03385 6.06193 6.19334 6.27531 6.31839 6.51647 6.65017 6.69260 6.70643 6.74405 6.89606 6.97374 7.65656 7.73190 7.81419 7.99917 8.06705 8.38750 8.65726 9.31783 9.93105 10.56805 11.49438 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.014557 B = 0.002763 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.053784 B =10132.289503 C =11239.617991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.005 4.005 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.234 4.234 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.111 4.111 12 H 0.088 0.912 13 C -0.122 4.122 14 C 0.107 3.893 15 N -0.593 5.593 16 C 0.610 3.390 17 O -0.521 6.521 18 C 0.009 3.991 19 C -0.164 4.164 20 C 0.084 3.916 21 C -0.129 4.129 22 C -0.213 4.213 23 C -0.027 4.027 24 O -0.177 6.177 25 C 0.006 3.994 26 N -0.383 5.383 27 H 0.443 0.557 28 N -0.248 5.248 29 C 0.114 3.886 30 H 0.082 0.918 31 C 0.178 3.822 32 H 0.252 0.748 33 H 0.039 0.961 34 H 0.016 0.984 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.086 0.914 39 H 0.165 0.835 40 H 0.151 0.849 41 H 0.206 0.794 42 H 0.214 0.786 43 H 0.044 0.956 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.159 -13.284 -15.106 24.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.202 4.202 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.362 4.362 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.019 3.981 11 C -0.131 4.131 12 H 0.106 0.894 13 C -0.160 4.160 14 C -0.016 4.016 15 N -0.326 5.326 16 C 0.395 3.605 17 O -0.395 6.395 18 C -0.151 4.151 19 C -0.192 4.192 20 C -0.041 4.041 21 C -0.132 4.132 22 C -0.232 4.232 23 C -0.094 4.094 24 O -0.072 6.072 25 C -0.064 4.064 26 N -0.097 5.097 27 H 0.287 0.713 28 N -0.084 5.084 29 C 0.011 3.989 30 H 0.100 0.900 31 C 0.052 3.948 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.034 0.966 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.104 0.896 39 H 0.182 0.818 40 H 0.169 0.831 41 H 0.223 0.777 42 H 0.230 0.770 43 H 0.063 0.937 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.901 -13.108 -14.938 23.694 hybrid contribution 0.041 0.948 -0.364 1.016 sum -12.860 -12.161 -15.302 23.397 Atomic orbital electron populations 1.70028 1.04734 1.24998 1.55937 1.24863 0.95651 0.97649 1.02068 0.86162 0.78667 0.83919 0.77394 1.21744 1.21795 1.20659 1.18996 0.91075 0.82454 1.43706 0.90388 1.44138 1.01540 1.01014 1.86223 1.21070 0.94037 0.86185 0.96851 1.22954 0.95441 0.98941 0.95746 0.89405 1.22756 0.94848 1.03100 0.95307 1.22378 0.91431 0.96634 0.91202 1.48325 1.10951 1.58095 1.15214 1.16432 0.80079 0.78768 0.85191 1.90836 1.69702 1.42790 1.36146 1.21911 0.94782 1.04717 0.93706 1.21650 0.96114 1.06310 0.95135 1.18903 0.87953 1.03548 0.93653 1.19224 0.92319 1.07336 0.94301 1.22778 0.97128 1.07417 0.95918 1.23898 0.95245 0.99951 0.90284 1.83934 1.40127 1.62761 1.20399 1.24163 0.86026 1.02156 0.94045 1.43508 1.07459 1.44558 1.14186 0.71276 1.73643 1.15417 1.20306 0.99080 1.22866 0.88114 1.00478 0.87421 0.89989 1.21287 0.84198 0.87595 1.01670 0.93711 0.94330 0.96645 0.89646 0.90679 0.92148 0.89561 0.81757 0.83102 0.77737 0.76960 0.93739 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.24 10.28 55.49 0.57 -27.67 16 2 C -0.01 -0.15 5.47 -17.43 -0.10 -0.25 16 3 Si 0.91 22.79 29.56 -169.99 -5.02 17.77 16 4 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.23 -6.69 10.23 -15.06 -0.15 -6.85 16 8 H 0.08 2.14 7.84 -52.49 -0.41 1.73 16 9 N -0.60 -15.82 3.37 -172.29 -0.58 -16.41 16 10 C 0.15 3.01 6.50 -3.69 -0.02 2.98 16 11 C -0.11 -1.93 3.97 -88.26 -0.35 -2.28 16 12 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 13 C -0.12 -1.91 6.32 -24.82 -0.16 -2.07 16 14 C 0.11 1.66 6.10 -2.61 -0.02 1.64 16 15 N -0.59 -11.39 2.83 -163.07 -0.46 -11.85 16 16 C 0.61 12.39 7.57 -12.38 -0.09 12.30 16 17 O -0.52 -12.34 17.00 5.30 0.09 -12.25 16 18 C 0.01 0.16 6.95 -82.86 -0.58 -0.42 16 19 C -0.16 -2.34 10.56 -39.01 -0.41 -2.75 16 20 C 0.08 0.97 7.19 -82.40 -0.59 0.38 16 21 C -0.13 -1.21 6.32 -103.23 -0.65 -1.86 16 22 C -0.21 -1.51 11.15 -37.50 -0.42 -1.93 16 23 C -0.03 -0.17 12.04 29.36 0.35 0.19 16 24 O -0.18 -1.43 10.55 6.65 0.07 -1.36 16 25 C 0.01 0.05 11.88 29.91 0.36 0.40 16 26 N -0.38 -4.15 6.90 33.32 0.23 -3.92 16 27 H 0.44 3.09 8.96 -190.44 -1.71 1.38 16 28 N -0.25 -3.51 9.30 33.37 0.31 -3.20 16 29 C 0.11 2.36 3.81 -65.92 -0.25 2.11 16 30 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 31 C 0.18 4.66 4.63 -3.60 -0.02 4.64 16 32 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 33 H 0.04 0.77 7.95 -51.93 -0.41 0.35 16 34 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 1.60 7.93 -51.93 -0.41 1.18 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.09 1.33 6.22 -51.93 -0.32 1.01 16 39 H 0.16 2.13 8.06 -52.49 -0.42 1.71 16 40 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.21 0.46 8.06 -52.48 -0.42 0.04 16 42 H 0.21 1.25 8.06 -52.48 -0.42 0.82 16 43 H 0.04 1.34 7.58 -51.93 -0.39 0.94 16 44 H 0.06 1.69 6.84 -51.93 -0.36 1.33 16 LS Contribution 366.40 15.07 5.52 5.52 Total: -1.00 -37.08 366.40 -9.33 -46.41 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -6.96 Total: 0.72 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: -3.10 Total: 6.24 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: 0.07 Total: -63.05 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.16 Total: -13.60 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.08 -9.33 -46.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076571663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.271 kcal (2) G-P(sol) polarization free energy of solvation -37.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds