Wall clock time and date at job start Wed Apr 1 2020 01:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99874 * 2 1 4 4 H 1.48500 * 109.46941 * 274.98405 * 3 2 1 5 5 H 1.48501 * 109.47343 * 34.98422 * 3 2 1 6 6 H 1.48506 * 109.46998 * 154.98412 * 3 2 1 7 7 C 1.38811 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00077 * 187.30888 * 7 2 1 9 9 N 1.36936 * 120.00204 * 7.31383 * 7 2 1 10 10 C 1.46647 * 125.29158 * 175.35296 * 9 7 2 11 11 C 1.53516 * 107.05049 * 197.36285 * 10 9 7 12 12 H 1.09003 * 112.80335 * 211.54090 * 11 10 9 13 13 C 1.54788 * 109.69031 * 84.08466 * 11 10 9 14 14 C 1.54844 * 101.42234 * 212.87145 * 13 11 10 15 15 N 1.47344 * 104.90757 * 37.27835 * 14 13 11 16 16 C 1.34777 * 125.52351 * 156.70523 * 15 14 13 17 17 O 1.21576 * 119.99686 * 180.02562 * 16 15 14 18 18 C 1.47733 * 120.00339 * 0.02950 * 16 15 14 19 19 C 1.41226 * 126.34319 * 179.97438 * 18 16 15 20 20 C 1.36676 * 105.43832 * 179.97438 * 19 18 16 21 21 C 1.48067 * 126.59123 * 180.02562 * 20 19 18 22 22 C 1.46798 * 127.12304 * 180.02562 * 21 20 19 23 23 C 1.34346 * 106.02315 * 179.97438 * 22 21 20 24 24 O 1.34163 * 109.02697 * 359.97438 * 23 22 21 25 25 C 1.34094 * 110.76812 * 359.76738 * 24 23 22 26 26 N 1.36322 * 106.81331 * 0.02562 * 20 19 18 27 27 H 0.97003 * 125.00074 * 179.97438 * 26 20 19 28 28 N 1.28455 * 109.99575 * 359.74599 * 26 20 19 29 29 C 1.47264 * 108.95310 * 336.72665 * 15 14 13 30 30 H 1.08998 * 112.72744 * 236.14975 * 29 15 14 31 31 C 1.46490 * 125.28655 * 355.32787 * 9 7 2 32 32 H 0.97001 * 120.00191 * 0.02562 * 1 2 3 33 33 H 1.08999 * 109.91439 * 316.70744 * 10 9 7 34 34 H 1.08995 * 109.92124 * 78.00981 * 10 9 7 35 35 H 1.08994 * 111.02396 * 330.96850 * 13 11 10 36 36 H 1.09004 * 111.02756 * 94.87936 * 13 11 10 37 37 H 1.08998 * 110.36584 * 278.41409 * 14 13 11 38 38 H 1.09000 * 110.43118 * 156.17536 * 14 13 11 39 39 H 1.07999 * 127.28175 * 359.97438 * 19 18 16 40 40 H 1.07998 * 126.99114 * 359.97438 * 22 21 20 41 41 H 1.08003 * 125.48780 * 179.97438 * 23 22 21 42 42 H 1.08009 * 125.78456 * 180.24590 * 25 24 23 43 43 H 1.08999 * 109.71577 * 297.78880 * 31 9 7 44 44 H 1.09001 * 109.72043 * 58.38295 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5043 2.6200 0.8027 6 1 3.5965 1.4121 0.5921 7 6 2.0103 -1.2021 0.0005 8 1 3.0836 -1.2059 0.1195 9 7 1.3339 -2.3833 -0.1499 10 6 1.9552 -3.7069 -0.2630 11 6 0.8958 -4.6532 -0.8450 12 1 1.0029 -5.6777 -0.4887 13 6 0.8843 -4.5370 -2.3885 14 6 -0.6116 -4.7832 -2.7035 15 7 -1.3433 -4.1203 -1.6098 16 6 -2.6182 -3.6872 -1.6702 17 8 -3.1244 -3.1509 -0.7036 18 6 -3.4004 -3.8640 -2.9109 19 6 -4.7384 -3.4638 -3.1209 20 6 -5.0307 -3.8306 -4.4046 21 6 -6.3176 -3.6295 -5.1088 22 6 -6.6442 -4.0189 -6.4860 23 6 -7.9169 -3.6384 -6.6870 24 8 -8.3829 -3.0619 -5.5687 25 6 -7.4434 -3.0519 -4.6120 26 7 -3.9097 -4.4173 -4.9120 27 1 -3.8272 -4.7765 -5.8093 28 7 -2.9771 -4.4201 -4.0286 29 6 -0.4558 -4.0073 -0.4401 30 1 -0.8771 -4.4665 0.4541 31 6 -0.1227 -2.5211 -0.2224 32 1 -0.4850 0.8400 -0.0004 33 1 2.8156 -3.6573 -0.9303 34 1 2.2651 -4.0570 0.7216 35 1 1.1939 -3.5420 -2.7081 36 1 1.5107 -5.3046 -2.8431 37 1 -0.8269 -5.8517 -2.7106 38 1 -0.8770 -4.3373 -3.6620 39 1 -5.3924 -2.9720 -2.4161 40 1 -5.9937 -4.5111 -7.1938 41 1 -8.4751 -3.7748 -7.6015 42 1 -7.5604 -2.6503 -3.6162 43 1 -0.5714 -2.1764 0.7092 44 1 -0.5068 -1.9323 -1.0554 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076571663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:05 Heat of formation + Delta-G solvation = 76.600088 kcal Electronic energy + Delta-G solvation = -29462.141113 eV Core-core repulsion = 25383.124487 eV Total energy + Delta-G solvation = -4079.016626 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.76311 -43.14880 -41.37500 -39.22350 -36.61905 -34.72479 -34.09285 -32.99891 -32.23619 -31.73315 -30.40690 -29.71812 -28.43463 -26.54484 -25.33339 -24.00813 -23.35901 -22.56323 -22.17854 -21.31434 -20.86823 -19.99994 -19.49867 -18.90890 -18.24741 -17.49473 -17.07700 -16.98696 -16.75746 -16.54912 -16.21782 -15.67471 -15.53935 -15.25334 -15.01547 -14.89412 -14.39993 -14.15721 -14.02770 -13.73837 -13.70687 -13.38839 -13.21028 -13.16970 -12.93144 -12.72134 -12.62570 -12.18166 -12.07766 -11.86222 -11.68356 -11.64762 -11.48609 -11.39561 -11.22577 -10.69348 -10.51250 -10.06811 -9.62524 -9.22588 -8.88494 -7.83732 -5.21800 0.20127 0.55141 1.09031 1.42237 1.45363 1.54776 1.66062 1.95706 2.00397 2.21715 2.34984 2.48823 3.13882 3.32574 3.47001 3.51136 3.67894 3.71472 3.78633 3.98163 4.03888 4.19460 4.34997 4.37881 4.41246 4.51158 4.55186 4.63760 4.63872 4.79224 4.89287 4.93366 4.97940 5.09628 5.13012 5.17095 5.21584 5.28476 5.40418 5.45308 5.52744 5.60210 5.80482 5.95749 6.15332 6.19755 6.52478 6.74273 7.07009 7.14179 7.79314 8.41273 9.24790 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.014557 B = 0.002763 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.053784 B =10132.289503 C =11239.617991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.072 4.072 3 Si 0.980 3.020 4 H -0.287 1.287 5 H -0.299 1.299 6 H -0.260 1.260 7 C -0.242 4.242 8 H 0.091 0.909 9 N -0.623 5.623 10 C 0.137 3.863 11 C -0.091 4.091 12 H 0.137 0.863 13 C -0.113 4.113 14 C 0.108 3.892 15 N -0.596 5.596 16 C 0.600 3.400 17 O -0.574 6.574 18 C -0.022 4.022 19 C -0.191 4.191 20 C 0.110 3.890 21 C -0.158 4.158 22 C -0.220 4.220 23 C -0.022 4.022 24 O -0.186 6.186 25 C 0.006 3.994 26 N -0.359 5.359 27 H 0.463 0.537 28 N -0.244 5.244 29 C 0.115 3.885 30 H 0.081 0.919 31 C 0.200 3.800 32 H 0.242 0.758 33 H 0.055 0.945 34 H 0.026 0.974 35 H 0.048 0.952 36 H 0.125 0.875 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.164 0.836 40 H 0.176 0.824 41 H 0.244 0.756 42 H 0.226 0.774 43 H -0.015 1.015 44 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.454 -15.796 -18.148 27.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.265 4.265 3 Si 0.808 3.192 4 H -0.214 1.214 5 H -0.226 1.226 6 H -0.184 1.184 7 C -0.371 4.371 8 H 0.109 0.891 9 N -0.349 5.349 10 C 0.012 3.988 11 C -0.110 4.110 12 H 0.155 0.845 13 C -0.151 4.151 14 C -0.014 4.014 15 N -0.328 5.328 16 C 0.387 3.613 17 O -0.452 6.452 18 C -0.181 4.181 19 C -0.219 4.219 20 C -0.016 4.016 21 C -0.161 4.161 22 C -0.239 4.239 23 C -0.088 4.088 24 O -0.081 6.081 25 C -0.063 4.063 26 N -0.077 5.077 27 H 0.311 0.689 28 N -0.081 5.081 29 C 0.011 3.989 30 H 0.099 0.901 31 C 0.074 3.926 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.043 0.957 35 H 0.067 0.933 36 H 0.143 0.857 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.182 0.818 40 H 0.193 0.807 41 H 0.260 0.740 42 H 0.243 0.757 43 H 0.003 0.997 44 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -12.134 -15.687 -18.031 26.803 hybrid contribution -0.245 1.704 0.505 1.794 sum -12.379 -13.983 -17.526 25.611 Atomic orbital electron populations 1.70334 1.06648 1.24942 1.57923 1.25808 0.96446 1.01547 1.02666 0.85036 0.77979 0.79004 0.77209 1.21443 1.22616 1.18434 1.19495 0.91809 0.83618 1.42129 0.89136 1.44447 1.01815 1.02758 1.85925 1.21356 0.95358 0.84188 0.97915 1.23029 0.91108 1.00053 0.96833 0.84526 1.22751 0.95570 1.02761 0.94036 1.22615 0.90784 0.98088 0.89877 1.48444 1.10686 1.57904 1.15749 1.17030 0.80530 0.77799 0.85910 1.90785 1.71005 1.45106 1.38334 1.21456 0.95534 1.07676 0.93400 1.21773 0.95587 1.07755 0.96758 1.18978 0.88649 1.01431 0.92523 1.19329 0.91561 1.09310 0.95881 1.23099 0.97988 1.07767 0.95038 1.24701 0.95295 0.98240 0.90535 1.83962 1.40197 1.62947 1.20996 1.24527 0.85881 1.01232 0.94708 1.43556 1.06593 1.43088 1.14482 0.68867 1.73516 1.15994 1.19998 0.98628 1.22668 0.90713 0.96771 0.88734 0.90141 1.20789 0.84165 0.90903 0.96746 0.94891 0.92729 0.95654 0.93285 0.85699 0.88715 0.89503 0.81836 0.80679 0.73977 0.75738 0.99684 0.97253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -63.02 10.28 21.65 0.22 -62.80 16 2 C -0.07 -4.37 5.47 84.86 0.46 -3.91 16 3 Si 0.98 48.39 29.56 68.60 2.03 50.42 16 4 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 5 H -0.30 -15.02 7.11 99.48 0.71 -14.31 16 6 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.24 -14.15 10.23 84.03 0.86 -13.29 16 8 H 0.09 4.95 7.84 -2.91 -0.02 4.92 16 9 N -0.62 -33.72 3.37 -699.00 -2.36 -36.08 16 10 C 0.14 5.48 6.50 86.52 0.56 6.05 16 11 C -0.09 -2.93 3.97 -9.27 -0.04 -2.97 16 12 H 0.14 3.21 8.14 -2.39 -0.02 3.19 16 13 C -0.11 -3.23 6.32 31.83 0.20 -3.03 16 14 C 0.11 3.13 6.10 86.85 0.53 3.66 16 15 N -0.60 -23.43 2.83 -788.10 -2.23 -25.66 16 16 C 0.60 25.90 7.57 86.75 0.66 26.56 16 17 O -0.57 -29.78 17.00 -3.96 -0.07 -29.85 16 18 C -0.02 -0.76 6.95 42.39 0.29 -0.47 16 19 C -0.19 -5.65 10.56 22.64 0.24 -5.42 16 20 C 0.11 2.45 7.19 40.69 0.29 2.74 16 21 C -0.16 -2.72 6.32 -18.96 -0.12 -2.84 16 22 C -0.22 -2.46 11.15 23.62 0.26 -2.20 16 23 C -0.02 -0.20 12.04 66.93 0.81 0.61 16 24 O -0.19 -2.63 10.55 0.86 0.01 -2.62 16 25 C 0.01 0.10 11.88 67.29 0.80 0.90 16 26 N -0.36 -7.17 6.90 -48.50 -0.33 -7.50 16 27 H 0.46 5.10 8.96 -219.99 -1.97 3.12 16 28 N -0.24 -6.68 9.30 -48.33 -0.45 -7.13 16 29 C 0.12 4.89 3.81 45.88 0.17 5.06 16 30 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 31 C 0.20 11.23 4.63 86.67 0.40 11.63 16 32 H 0.24 15.77 8.31 -92.71 -0.77 15.00 16 33 H 0.05 2.04 7.95 -2.39 -0.02 2.02 16 34 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.05 1.78 7.93 -2.39 -0.02 1.76 16 36 H 0.12 2.39 8.14 -2.38 -0.02 2.37 16 37 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.09 2.55 6.22 -2.39 -0.01 2.53 16 39 H 0.16 4.64 8.06 -2.91 -0.02 4.62 16 40 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 41 H 0.24 0.05 8.06 -2.91 -0.02 0.03 16 42 H 0.23 2.61 8.06 -2.91 -0.02 2.58 16 43 H -0.02 -1.00 7.58 -2.39 -0.02 -1.02 16 44 H 0.01 0.60 6.84 -2.39 -0.02 0.58 16 Total: -1.00 -89.93 366.40 2.29 -87.65 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -0.92 Total: 10.49 kcal Atomic # 6 Polarization: 16.70 SS G_CDS: 6.39 Total: 23.09 kcal Atomic # 7 Polarization: -134.03 SS G_CDS: -5.15 Total: -139.18 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -0.06 Total: -32.47 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 2.03 Total: 50.42 kcal Total: -89.93 2.29 -87.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076571663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.245 kcal (2) G-P(sol) polarization free energy of solvation -89.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds