Wall clock time and date at job start Wed Apr 1 2020 00:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34783 * 119.99479 * 2 1 4 4 O 1.21274 * 120.00141 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99881 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.47216 * 180.02562 * 5 3 2 7 7 N 1.40076 * 125.96995 * 269.97899 * 6 5 3 8 8 C 1.31255 * 108.16204 * 180.02562 * 7 6 5 9 9 N 1.40037 * 125.97693 * 179.97438 * 8 7 6 10 10 C 1.34771 * 119.99863 * 180.02562 * 9 8 7 11 11 O 1.21626 * 120.00340 * 0.02562 * 10 9 8 12 12 C 1.47390 * 119.99802 * 180.02562 * 10 9 8 13 13 C 1.39256 * 120.28609 * 355.04016 * 12 10 9 14 14 C 1.38196 * 120.09160 * 179.97438 * 13 12 10 15 15 C 1.38840 * 120.67887 * 0.04426 * 14 13 12 16 16 C 1.37582 * 120.58032 * 0.02562 * 15 14 13 17 17 C 1.40717 * 119.87741 * 359.65749 * 16 15 14 18 18 C 1.40876 * 120.33098 * 180.32339 * 17 16 15 19 19 H 1.07997 * 120.00177 * 141.57321 * 18 17 16 20 20 C 1.40278 * 120.00021 * 321.57204 * 18 17 16 21 21 N 1.30620 * 120.00120 * 174.32981 * 20 18 17 22 22 Si 1.86804 * 119.99972 * 354.33295 * 20 18 17 23 23 H 1.48503 * 109.46815 * 89.39726 * 22 20 18 24 24 H 1.48487 * 109.47121 * 209.39958 * 22 20 18 25 25 H 1.48502 * 109.47126 * 329.40370 * 22 20 18 26 26 C 1.40431 * 108.04213 * 359.74263 * 8 7 6 27 27 C 1.34974 * 125.97535 * 89.99927 * 6 5 3 28 28 C 1.50704 * 126.06409 * 359.97438 * 27 6 5 29 29 H 1.09000 * 109.47114 * 60.00376 * 1 2 3 30 30 H 1.09005 * 109.46554 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47244 * 299.99991 * 1 2 3 32 32 H 0.96995 * 120.00627 * 179.97438 * 2 1 3 33 33 H 1.09005 * 109.47089 * 59.99660 * 5 3 2 34 34 H 1.09000 * 109.47099 * 299.99908 * 5 3 2 35 35 H 0.96999 * 119.99928 * 0.02562 * 9 8 7 36 36 H 1.08001 * 119.95237 * 359.97438 * 13 12 10 37 37 H 1.07993 * 119.66261 * 180.02562 * 14 13 12 38 38 H 1.07999 * 119.71152 * 179.97438 * 15 14 13 39 39 H 1.07994 * 120.06471 * 180.02562 * 16 15 14 40 40 H 0.97003 * 119.99987 * 179.97438 * 21 20 18 41 41 H 1.08003 * 126.06267 * 180.28831 * 26 8 7 42 42 H 1.08994 * 109.46902 * 90.00004 * 28 27 6 43 43 H 1.08996 * 109.47064 * 329.99907 * 28 27 6 44 44 H 1.08996 * 109.47084 * 209.99992 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6458 1.1674 0.0006 6 7 4.1341 2.5486 0.0011 7 7 4.4091 3.3245 -1.1323 8 6 4.8259 4.5025 -0.7305 9 7 5.2037 5.5675 -1.5575 10 6 5.6153 6.7299 -1.0135 11 8 5.6591 6.8537 0.1957 12 6 6.0124 7.8510 -1.8839 13 6 6.0635 7.6837 -3.2654 14 6 6.4358 8.7378 -4.0778 15 6 6.7634 9.9716 -3.5318 16 6 6.7238 10.1673 -2.1705 17 6 6.3414 9.1123 -1.3215 18 6 6.2910 9.3042 0.0732 19 1 5.5011 8.8495 0.6527 20 6 7.2667 10.0858 0.7095 21 7 7.1592 10.3556 1.9830 22 14 8.7199 10.7410 -0.2646 23 1 8.3728 12.0647 -0.8412 24 1 9.8935 10.8845 0.6336 25 1 9.0482 9.7944 -1.3607 26 6 4.8214 4.5096 0.6738 27 6 4.3979 3.2960 1.0937 28 6 4.2419 2.8577 2.5271 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.9501 -0.8399 0.0004 33 1 4.0096 0.6533 -0.8892 34 1 4.0089 0.6538 0.8908 35 1 5.1691 5.4687 -2.5218 36 1 5.8117 6.7287 -3.7026 37 1 6.4727 8.6004 -5.1483 38 1 7.0527 10.7845 -4.1812 39 1 6.9798 11.1306 -1.7548 40 1 7.8341 10.8958 2.4230 41 1 5.1077 5.3369 1.3063 42 1 5.1731 2.4092 2.8732 43 1 3.4377 2.1254 2.5977 44 1 4.0022 3.7215 3.1471 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601395708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:40:09 Heat of formation + Delta-G solvation = 46.047754 kcal Electronic energy + Delta-G solvation = -28906.506458 eV Core-core repulsion = 24826.164983 eV Total energy + Delta-G solvation = -4080.341475 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.148 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.17489 -39.74489 -38.97534 -37.09370 -34.95784 -34.53940 -33.61260 -32.43387 -31.78747 -30.50675 -30.06825 -28.16558 -26.78668 -25.86338 -25.23952 -22.86938 -21.63526 -21.14002 -20.46517 -19.81176 -19.22297 -17.86556 -17.55591 -16.89125 -16.47146 -16.15951 -15.68231 -15.34774 -15.19809 -14.99664 -14.29227 -14.13625 -14.08862 -13.86196 -13.60618 -13.46338 -13.15924 -12.87025 -12.72932 -12.67591 -12.60218 -12.49371 -12.21804 -12.02132 -11.95204 -11.58203 -10.95556 -10.76304 -10.60838 -10.45574 -10.31098 -10.09129 -9.93224 -9.79868 -9.53175 -9.27687 -8.54393 -8.26086 -7.92467 -7.72280 -7.59417 -6.89936 -4.49625 1.86723 2.09659 2.27412 2.37967 2.58055 2.98085 3.08886 3.15627 3.26008 3.29009 3.75473 3.95601 4.07965 4.34963 4.48548 4.59875 4.77054 4.79339 4.85737 5.13492 5.16815 5.34502 5.43491 5.52017 5.61947 5.78442 5.81754 5.88187 5.95970 5.99964 6.18582 6.24520 6.37867 6.46903 6.72753 6.76610 6.99068 7.07361 7.17569 7.27820 7.35275 7.46451 7.52375 7.65021 7.83251 7.87171 7.97577 8.39526 8.45405 8.58836 8.80139 9.18986 10.07760 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.018081 B = 0.002661 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.183411 B =10520.191240 C =11546.158043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.738 5.738 3 C 0.489 3.511 4 O -0.509 6.509 5 C 0.126 3.874 6 N -0.366 5.366 7 N -0.334 5.334 8 C 0.325 3.675 9 N -0.648 5.648 10 C 0.566 3.434 11 O -0.497 6.497 12 C -0.246 4.246 13 C -0.041 4.041 14 C -0.249 4.249 15 C -0.064 4.064 16 C -0.222 4.222 17 C 0.119 3.881 18 C -0.394 4.394 19 H 0.116 0.884 20 C 0.079 3.921 21 N -0.793 5.793 22 Si 0.908 3.092 23 H -0.268 1.268 24 H -0.289 1.289 25 H -0.242 1.242 26 C -0.255 4.255 27 C 0.089 3.911 28 C -0.087 4.087 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.402 0.598 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.406 0.594 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.287 0.713 41 H 0.177 0.823 42 H 0.078 0.922 43 H 0.062 0.938 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.544 -20.050 -1.942 20.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.392 5.392 3 C 0.273 3.727 4 O -0.382 6.382 5 C -0.001 4.001 6 N -0.151 5.151 7 N -0.164 5.164 8 C 0.068 3.932 9 N -0.298 5.298 10 C 0.360 3.640 11 O -0.371 6.371 12 C -0.251 4.251 13 C -0.060 4.060 14 C -0.269 4.269 15 C -0.083 4.083 16 C -0.241 4.241 17 C 0.114 3.886 18 C -0.421 4.421 19 H 0.134 0.866 20 C -0.141 4.141 21 N -0.417 5.417 22 Si 0.734 3.266 23 H -0.194 1.194 24 H -0.217 1.217 25 H -0.165 1.165 26 C -0.285 4.285 27 C -0.035 4.035 28 C -0.146 4.146 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.235 0.765 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.242 0.758 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.125 0.875 40 H 0.098 0.902 41 H 0.194 0.806 42 H 0.097 0.903 43 H 0.080 0.920 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.179 -19.812 -1.747 20.826 hybrid contribution 0.859 0.244 -0.348 0.959 sum -5.320 -19.567 -2.094 20.385 Atomic orbital electron populations 1.21539 0.79251 1.02212 1.02570 1.45749 1.07938 1.08417 1.77052 1.21184 0.90569 0.84163 0.76822 1.90817 1.69701 1.31072 1.46640 1.21218 0.91099 0.81447 1.06304 1.47201 1.54224 1.10375 1.03254 1.77293 1.29233 1.03447 1.06387 1.19202 0.95270 0.87888 0.90822 1.43048 1.66641 1.10890 1.09259 1.18464 0.76469 0.80589 0.88455 1.90693 1.51263 1.80729 1.14430 1.19222 1.20667 0.93297 0.91925 1.20822 0.95485 0.96936 0.92740 1.20305 1.14283 0.94501 0.97761 1.20766 0.96671 0.96128 0.94725 1.21184 1.11138 0.98462 0.93348 1.17521 0.88320 0.88942 0.93786 1.19972 1.09601 1.21068 0.91451 0.86595 1.26312 0.99876 0.92735 0.95211 1.69540 1.33501 1.27649 1.10968 0.86391 0.79538 0.80418 0.80227 1.19392 1.21659 1.16508 1.21757 1.14201 0.98832 0.93666 1.21007 1.00182 0.92010 0.90324 1.20397 1.01998 1.02700 0.89488 0.92160 0.90528 0.92138 0.76451 0.86053 0.86340 0.75788 0.88502 0.88302 0.88387 0.87535 0.90213 0.80636 0.90320 0.91952 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.56 10.70 59.85 0.64 1.20 16 2 N -0.74 -4.87 5.71 -67.08 -0.38 -5.25 16 3 C 0.49 5.42 7.90 -10.98 -0.09 5.33 16 4 O -0.51 -8.66 16.43 5.56 0.09 -8.57 16 5 C 0.13 1.20 6.54 -5.19 -0.03 1.16 16 6 N -0.37 -5.62 3.10 -58.33 -0.18 -5.80 16 7 N -0.33 -6.22 12.59 31.42 0.40 -5.82 16 8 C 0.32 6.62 8.10 -154.47 -1.25 5.37 16 9 N -0.65 -13.07 5.39 -12.12 -0.07 -13.14 16 10 C 0.57 13.31 7.69 -12.54 -0.10 13.21 16 11 O -0.50 -13.10 10.80 5.25 0.06 -13.04 16 12 C -0.25 -5.80 5.92 -104.37 -0.62 -6.41 16 13 C -0.04 -0.83 9.52 -39.22 -0.37 -1.20 16 14 C -0.25 -4.87 10.03 -39.37 -0.39 -5.27 16 15 C -0.06 -1.32 10.01 -39.60 -0.40 -1.72 16 16 C -0.22 -5.19 6.93 -38.89 -0.27 -5.46 16 17 C 0.12 3.04 5.04 -106.54 -0.54 2.51 16 18 C -0.39 -10.91 8.08 -37.82 -0.31 -11.22 16 19 H 0.12 3.54 6.37 -52.49 -0.33 3.20 16 20 C 0.08 2.09 5.51 -17.30 -0.10 2.00 16 21 N -0.79 -21.42 13.92 55.56 0.77 -20.64 16 22 Si 0.91 20.62 24.48 -169.99 -4.16 16.45 16 23 H -0.27 -5.77 6.71 56.52 0.38 -5.39 16 24 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.24 -5.62 6.67 56.52 0.38 -5.24 16 26 C -0.25 -5.10 9.51 -39.83 -0.38 -5.48 16 27 C 0.09 1.44 6.92 -82.28 -0.57 0.87 16 28 C -0.09 -0.98 9.89 36.01 0.36 -0.63 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.40 1.05 8.83 -40.82 -0.36 0.69 16 33 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.12 0.65 7.64 -51.93 -0.40 0.25 16 35 H 0.41 7.06 6.88 -40.82 -0.28 6.78 16 36 H 0.10 1.61 6.43 -52.49 -0.34 1.28 16 37 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 39 H 0.11 2.44 4.88 -52.49 -0.26 2.18 16 40 H 0.29 6.97 8.29 -40.82 -0.34 6.64 16 41 H 0.18 3.89 5.91 -52.48 -0.31 3.58 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.58 7.71 -51.93 -0.40 0.18 16 44 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 369.11 15.07 5.56 5.56 Total: -1.00 -36.51 369.11 -7.56 -44.08 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -5.24 Total: 11.91 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -4.41 Total: -5.74 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: 0.54 Total: -50.66 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: 0.15 Total: -21.61 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.16 Total: 16.45 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.51 -7.56 -44.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601395708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.123 kcal (2) G-P(sol) polarization free energy of solvation -36.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds