Wall clock time and date at job start Wed Apr 1 2020 02:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 C 1.52999 * 109.46623 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.46953 * 179.97438 * 4 3 2 6 6 N 1.29941 * 126.28776 * 90.02413 * 5 4 3 7 7 O 1.21300 * 110.25544 * 179.97438 * 6 5 4 8 8 C 1.33649 * 109.80688 * 0.02562 * 7 6 5 9 9 C 1.50701 * 126.54822 * 179.97438 * 8 7 6 10 10 N 1.46903 * 109.46910 * 269.97195 * 9 8 7 11 11 C 1.46903 * 110.99548 * 180.02562 * 10 9 8 12 12 C 1.53005 * 109.46813 * 180.02562 * 11 10 9 13 13 N 1.46498 * 109.46937 * 180.02562 * 12 11 10 14 14 C 1.34783 * 119.99924 * 179.97438 * 13 12 11 15 15 O 1.21281 * 119.99746 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99674 * 179.97438 * 14 13 12 17 17 S 1.81000 * 109.46628 * 179.97438 * 16 14 13 18 18 C 1.76198 * 100.00015 * 180.02562 * 17 16 14 19 19 H 1.08008 * 120.00129 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00358 * 179.97438 * 18 17 16 21 21 N 1.31630 * 119.99707 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00166 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46847 * 60.00778 * 22 20 18 24 24 H 1.48504 * 109.46988 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47131 * 300.00262 * 22 20 18 26 26 N 1.31134 * 106.89752 * 359.76531 * 8 7 6 27 27 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 28 28 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 29 29 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 31 31 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 32 32 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 33 33 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 34 34 H 1.09000 * 109.47486 * 299.99829 * 4 3 2 35 35 H 1.09001 * 109.47362 * 60.00551 * 4 3 2 36 36 H 1.08998 * 109.47122 * 29.97147 * 9 8 7 37 37 H 1.08997 * 109.46960 * 149.97511 * 9 8 7 38 38 H 1.00903 * 110.99719 * 56.05077 * 10 9 8 39 39 H 1.09005 * 109.47198 * 299.99958 * 11 10 9 40 40 H 1.08994 * 109.47034 * 60.00580 * 11 10 9 41 41 H 1.09005 * 109.46792 * 299.99702 * 12 11 10 42 42 H 1.08993 * 109.47150 * 59.99674 * 12 11 10 43 43 H 0.96999 * 120.00402 * 0.02562 * 13 12 11 44 44 H 1.08992 * 109.47440 * 300.00285 * 16 14 13 45 45 H 1.09003 * 109.47130 * 60.00846 * 16 14 13 46 46 H 0.97005 * 120.00015 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0722 2.8635 0.0000 6 7 4.3285 3.5890 1.0471 7 8 4.7175 4.6879 0.7116 8 6 4.7467 4.7703 -0.6220 9 6 5.1690 5.9646 -1.4384 10 7 4.0003 6.8139 -1.7042 11 6 4.3748 7.9905 -2.5002 12 6 3.1345 8.8492 -2.7556 13 7 3.5078 10.0222 -3.5499 14 6 2.5707 10.9259 -3.8987 15 8 1.4183 10.7678 -3.5553 16 6 2.9549 12.1328 -4.7153 17 16 1.4873 13.1478 -5.0188 18 6 2.2056 14.4490 -5.9652 19 1 3.2630 14.4367 -6.1849 20 6 1.4124 15.4891 -6.4293 21 7 0.1236 15.5038 -6.1619 22 14 2.1738 16.8682 -7.4332 23 1 2.7838 16.3054 -8.6646 24 1 1.1223 17.8488 -7.8048 25 1 3.2206 17.5470 -6.6279 26 7 4.3420 3.6118 -1.0845 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6765 1.9564 -0.8900 33 1 1.6764 1.9564 0.8900 34 1 3.9329 0.9289 0.8909 35 1 3.9336 0.9287 -0.8892 36 1 5.9156 6.5360 -0.8868 37 1 5.5950 5.6267 -2.3830 38 1 3.5490 7.0875 -0.8442 39 1 5.1161 8.5761 -1.9564 40 1 4.7950 7.6663 -3.4522 41 1 2.3929 8.2637 -3.2992 42 1 2.7146 9.1733 -1.8034 43 1 4.4293 10.1481 -3.8255 44 1 3.6961 12.7185 -4.1716 45 1 3.3751 11.8086 -5.6673 46 1 -0.4307 16.2310 -6.4859 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123792126.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:21 Heat of formation + Delta-G solvation = 13.195772 kcal Electronic energy + Delta-G solvation = -25146.708712 eV Core-core repulsion = 21200.386619 eV Total energy + Delta-G solvation = -3946.322092 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.151 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.00954 -39.25557 -37.45280 -37.20764 -35.56147 -34.59452 -33.03196 -32.43311 -30.75739 -30.20005 -28.49539 -25.92104 -25.60775 -25.41176 -23.62814 -22.53491 -21.83357 -21.35877 -20.41379 -18.52140 -18.00983 -17.78737 -16.99752 -16.33847 -16.15331 -15.99964 -15.55920 -15.19057 -14.89730 -14.80492 -14.57212 -14.45823 -13.92109 -13.87216 -13.79170 -13.43325 -13.13635 -12.97481 -12.63407 -12.53050 -12.30879 -12.26108 -11.95426 -11.86333 -11.60713 -11.55596 -11.45208 -11.40422 -11.07478 -11.05209 -11.04217 -10.77703 -10.36988 -9.83425 -9.45946 -9.18232 -9.07089 -8.94190 -8.24863 -6.50862 -6.21953 -3.92890 0.66567 1.77782 2.27565 2.92746 3.07192 3.13906 3.23165 3.25911 3.28983 3.52374 3.57280 3.96305 4.19997 4.27633 4.39853 4.43271 4.48567 4.53858 4.64804 4.75400 4.86208 4.89058 5.01694 5.08973 5.09237 5.13156 5.15863 5.25567 5.34100 5.39907 5.46955 5.57252 5.58500 5.66143 5.67431 5.74914 5.78786 5.84274 5.87839 6.11864 6.17470 6.51996 6.63155 7.58522 7.64706 7.74679 8.34351 8.57798 9.23164 10.85402 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.021326 B = 0.001328 C = 0.001269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.662065 B =21084.107254 C =22062.102243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.116 4.116 4 C -0.029 4.029 5 C 0.171 3.829 6 N -0.382 5.382 7 O 0.077 5.923 8 C 0.182 3.818 9 C 0.156 3.844 10 N -0.680 5.680 11 C 0.052 3.948 12 C 0.122 3.878 13 N -0.739 5.739 14 C 0.533 3.467 15 O -0.515 6.515 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 N -0.460 5.460 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.074 0.926 37 H 0.121 0.879 38 H 0.352 0.648 39 H 0.046 0.954 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.398 0.602 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.616 -28.431 12.787 33.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.154 4.154 4 C -0.068 4.068 5 C -0.101 4.101 6 N -0.089 5.089 7 O 0.018 5.982 8 C -0.040 4.040 9 C 0.025 3.975 10 N -0.314 5.314 11 C -0.077 4.077 12 C -0.003 4.003 13 N -0.395 5.395 14 C 0.319 3.681 15 O -0.389 6.389 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 N -0.194 5.194 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.092 0.908 37 H 0.139 0.861 38 H 0.171 0.829 39 H 0.064 0.936 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.232 0.768 44 H 0.108 0.892 45 H 0.109 0.891 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.099 -29.570 13.318 33.967 hybrid contribution 2.788 1.813 -0.509 3.364 sum 12.887 -27.757 12.809 33.176 Atomic orbital electron populations 1.21770 0.95423 1.01816 1.02143 1.21499 0.96339 0.95810 1.02295 1.21607 0.92701 0.97955 1.03172 1.20043 0.96560 0.85490 1.04714 1.25927 1.00290 1.00515 0.83399 1.74648 1.17453 0.92864 1.23900 1.85303 1.60690 1.27363 1.24844 1.28612 0.96529 0.96889 0.81960 1.20332 0.92397 0.86740 0.98006 1.60228 1.25723 1.20336 1.25104 1.22130 0.97024 0.89815 0.98751 1.21107 0.96320 0.86254 0.96584 1.45871 1.12076 1.24364 1.57159 1.20307 0.85165 0.83234 0.79442 1.90716 1.18984 1.75752 1.53422 1.23528 1.07395 0.97904 1.01564 1.85420 1.05910 1.22399 1.69596 1.22829 0.97211 1.09370 1.39122 0.90964 1.24987 0.94725 0.97799 0.95998 1.70009 1.04500 1.32277 1.43481 0.86227 0.78735 0.80550 0.80001 1.19929 1.20802 1.19949 1.71917 1.16361 1.01968 1.29152 0.92672 0.92474 0.92543 0.91587 0.91801 0.91002 0.91577 0.89101 0.88502 0.90834 0.86076 0.82932 0.93623 0.89481 0.90466 0.91605 0.76832 0.89191 0.89142 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.16 0.37 -0.42 16 2 C -0.12 -0.59 5.93 -26.73 -0.16 -0.75 16 3 C -0.12 -0.73 5.20 -26.73 -0.14 -0.87 16 4 C -0.03 -0.19 5.84 -27.88 -0.16 -0.35 16 5 C 0.17 1.61 7.47 -156.37 -1.17 0.44 16 6 N -0.38 -3.93 12.16 30.90 0.38 -3.56 16 7 O 0.08 0.70 11.31 18.08 0.20 0.91 16 8 C 0.18 1.46 8.03 -13.05 -0.10 1.36 16 9 C 0.16 0.78 6.31 -4.97 -0.03 0.75 16 10 N -0.68 -4.38 6.49 -115.05 -0.75 -5.12 16 11 C 0.05 0.32 5.80 -3.82 -0.02 0.30 16 12 C 0.12 1.26 5.93 -4.04 -0.02 1.23 16 13 N -0.74 -8.91 5.56 -60.29 -0.33 -9.25 16 14 C 0.53 9.59 7.85 -10.98 -0.09 9.50 16 15 O -0.52 -11.55 15.86 5.56 0.09 -11.46 16 16 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 17 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 18 C -0.54 -15.16 9.50 30.94 0.29 -14.86 16 19 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.03 13.22 55.49 0.73 -25.30 16 22 Si 0.92 21.20 29.55 -169.99 -5.02 16.17 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 N -0.46 -4.54 11.55 -9.86 -0.11 -4.65 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.35 2.16 8.72 -39.29 -0.34 1.82 16 39 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 40 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.40 3.46 8.47 -40.82 -0.35 3.11 16 44 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 45 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 46 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 408.74 15.07 6.16 6.16 Total: -1.00 -36.33 408.74 -9.40 -45.73 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -7.42 Total: -1.38 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -1.11 Total: -4.43 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: -0.09 Total: -47.88 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.29 Total: -10.55 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.33 -9.40 -45.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792126.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.926 kcal (2) G-P(sol) polarization free energy of solvation -36.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds