Wall clock time and date at job start Wed Apr 1 2020 01:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29419 * 125.69745 * 2 1 4 4 N 1.26405 * 116.47741 * 179.75065 * 3 2 1 5 5 C 1.29418 * 116.47034 * 0.53462 * 4 3 2 6 6 C 1.50699 * 125.69146 * 179.77082 * 5 4 3 7 7 O 1.42900 * 109.47176 * 89.69299 * 6 5 4 8 8 C 1.42902 * 113.99794 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.47041 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99543 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99854 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99607 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47605 * 34.99616 * 12 11 9 14 14 C 1.53005 * 109.47295 * 274.99588 * 12 11 9 15 15 C 1.53006 * 109.47329 * 155.00046 * 12 11 9 16 16 C 1.52997 * 109.46841 * 295.00084 * 15 12 11 17 17 H 1.09005 * 109.47159 * 54.99606 * 16 15 12 18 18 C 1.52999 * 109.47264 * 174.99605 * 16 15 12 19 19 N 1.46498 * 109.47167 * 294.99436 * 16 15 12 20 20 C 1.36935 * 120.00239 * 154.99975 * 19 16 15 21 21 H 1.08004 * 120.00069 * 0.02562 * 20 19 16 22 22 C 1.38811 * 120.00368 * 180.02562 * 20 19 16 23 23 N 1.31624 * 119.99540 * 359.72375 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47364 * 179.72253 * 24 22 20 26 26 H 1.48508 * 109.46883 * 299.72375 * 24 22 20 27 27 H 1.48497 * 109.46870 * 59.72186 * 24 22 20 28 28 S 1.71219 * 108.61018 * 359.50377 * 5 4 3 29 29 H 1.09004 * 109.46728 * 269.95757 * 1 2 3 30 30 H 1.08994 * 109.46875 * 29.95465 * 1 2 3 31 31 H 1.09003 * 109.47005 * 149.96074 * 1 2 3 32 32 H 1.09003 * 109.47323 * 329.69202 * 6 5 4 33 33 H 1.08998 * 109.46658 * 209.69179 * 6 5 4 34 34 H 1.08993 * 109.47603 * 59.99868 * 8 7 6 35 35 H 1.09003 * 109.47137 * 299.99481 * 8 7 6 36 36 H 0.97002 * 120.00356 * 359.97438 * 11 9 8 37 37 H 1.08999 * 109.47043 * 300.01013 * 14 12 11 38 38 H 1.09001 * 109.46484 * 60.00332 * 14 12 11 39 39 H 1.08994 * 109.47185 * 180.02562 * 14 12 11 40 40 H 1.08996 * 109.47489 * 174.99502 * 15 12 11 41 41 H 1.09001 * 109.46720 * 54.99468 * 15 12 11 42 42 H 1.09005 * 109.47033 * 59.99923 * 18 16 15 43 43 H 1.08994 * 109.47214 * 179.97438 * 18 16 15 44 44 H 1.08994 * 109.47102 * 299.99987 * 18 16 15 45 45 H 0.97004 * 119.99747 * 335.00715 * 19 16 15 46 46 H 0.97000 * 120.00481 * 0.27542 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0510 0.0000 4 7 3.5099 0.8485 0.0049 5 6 3.8937 -0.3874 -0.0014 6 6 5.3233 -0.8641 -0.0023 7 8 5.7758 -1.0153 1.3447 8 6 7.1275 -1.4654 1.4566 9 6 7.4971 -1.5884 2.9125 10 8 6.6832 -1.3168 3.7697 11 7 8.7320 -2.0001 3.2618 12 6 9.0910 -2.1201 4.6770 13 1 8.2221 -2.4519 5.2455 14 6 9.5553 -0.7603 5.2026 15 6 10.2214 -3.1396 4.8318 16 6 9.7179 -4.5253 4.4230 17 1 9.3085 -4.4800 3.4137 18 6 10.8792 -5.5208 4.4580 19 7 8.6739 -4.9599 5.3543 20 6 7.7334 -5.8703 4.9523 21 1 7.7614 -6.2683 3.9487 22 6 6.7439 -6.2818 5.8346 23 7 6.7130 -5.8008 7.0595 24 14 5.4613 -7.5243 5.2864 25 1 4.5280 -7.8001 6.4081 26 1 4.7018 -6.9760 4.1340 27 1 6.1343 -8.7844 4.8813 28 16 2.5061 -1.3905 -0.0010 29 1 -0.3633 -0.0008 1.0277 30 1 -0.3633 0.8904 -0.5131 31 1 -0.3633 -0.8897 -0.5145 32 1 5.9493 -0.1346 -0.5161 33 1 5.3861 -1.8231 -0.5165 34 1 7.7906 -0.7481 0.9732 35 1 7.2283 -2.4368 0.9726 36 1 9.3827 -2.2176 2.5762 37 1 10.4241 -0.4284 4.6341 38 1 8.7500 -0.0340 5.0924 39 1 9.8228 -0.8497 6.2554 40 1 10.5489 -3.1640 5.8711 41 1 11.0578 -2.8542 4.1938 42 1 11.2886 -5.5661 5.4673 43 1 10.5204 -6.5080 4.1672 44 1 11.6559 -5.1974 3.7651 45 1 8.6489 -4.6027 6.2558 46 1 7.3792 -5.1559 7.3443 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134876708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:03 Heat of formation + Delta-G solvation = -9.685795 kcal Electronic energy + Delta-G solvation = -27343.342949 eV Core-core repulsion = 23396.028637 eV Total energy + Delta-G solvation = -3947.314312 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.151 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.53439 -39.75299 -38.05366 -36.76103 -34.59899 -33.67829 -32.38565 -31.20824 -30.54389 -28.32868 -27.91143 -26.55979 -26.33515 -24.53639 -23.41699 -21.56368 -20.47930 -20.16511 -19.89423 -19.61521 -17.53501 -17.25908 -17.07973 -16.39719 -16.00104 -15.68893 -15.51349 -14.90679 -14.47270 -14.36228 -14.15347 -13.63434 -13.56982 -13.47858 -13.38900 -13.16942 -13.11289 -12.86179 -12.44904 -12.17156 -12.13588 -12.03524 -11.70819 -11.70144 -11.03515 -10.73136 -10.71614 -10.53638 -10.49548 -10.46698 -10.11168 -10.06668 -10.03125 -9.93408 -9.89438 -9.51030 -9.11701 -8.87061 -8.77560 -6.97732 -6.03365 -3.02950 0.06948 0.61226 1.08784 2.19361 2.84126 2.91596 3.53094 3.56893 3.57892 3.74945 3.98051 4.27817 4.47064 4.67822 4.71899 4.80495 4.89772 4.94536 5.00955 5.04357 5.09302 5.15883 5.23054 5.33859 5.38787 5.48576 5.60448 5.66648 5.80626 5.87431 5.92366 6.04182 6.20224 6.29271 6.34526 6.46265 6.59035 6.62227 6.75064 6.85676 6.99369 7.71683 7.84248 8.27942 8.49330 8.81717 9.28813 10.14962 10.29551 11.45076 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.009755 B = 0.002888 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2869.681209 B = 9693.761417 C =11671.278610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.021 4.021 3 N -0.264 5.264 4 N -0.239 5.239 5 C -0.023 4.023 6 C 0.143 3.857 7 O -0.352 6.352 8 C 0.046 3.954 9 C 0.514 3.486 10 O -0.510 6.510 11 N -0.715 5.715 12 C 0.147 3.853 13 H 0.102 0.898 14 C -0.162 4.162 15 C -0.132 4.132 16 C 0.177 3.823 17 H 0.047 0.953 18 C -0.165 4.165 19 N -0.732 5.732 20 C -0.326 4.326 21 H 0.060 0.940 22 C -0.044 4.044 23 N -0.943 5.943 24 Si 1.076 2.924 25 H -0.285 1.285 26 H -0.296 1.296 27 H -0.297 1.297 28 S 0.206 5.794 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.394 0.606 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.044 0.956 43 H 0.052 0.948 44 H 0.035 0.965 45 H 0.366 0.634 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.114 9.884 -18.475 20.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.298 4.298 3 N -0.103 5.103 4 N -0.079 5.079 5 C -0.302 4.302 6 C 0.063 3.937 7 O -0.270 6.270 8 C -0.034 4.034 9 C 0.298 3.702 10 O -0.384 6.384 11 N -0.369 5.369 12 C 0.043 3.957 13 H 0.120 0.880 14 C -0.220 4.220 15 C -0.171 4.171 16 C 0.067 3.933 17 H 0.065 0.935 18 C -0.225 4.225 19 N -0.375 5.375 20 C -0.457 4.457 21 H 0.079 0.921 22 C -0.242 4.242 23 N -0.588 5.588 24 Si 0.908 3.092 25 H -0.210 1.210 26 H -0.224 1.224 27 H -0.224 1.224 28 S 0.449 5.551 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.228 0.772 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.054 0.946 45 H 0.199 0.801 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.157 9.505 -17.394 20.072 hybrid contribution 2.009 0.805 -0.766 2.296 sum -1.148 10.310 -18.160 20.914 Atomic orbital electron populations 1.20417 0.83726 1.04719 1.04683 1.29354 1.04581 0.92194 1.03688 1.71485 0.96752 1.26793 1.15302 1.71415 1.06622 1.17080 1.12773 1.28657 1.02269 0.92873 1.06374 1.20654 0.86604 1.00744 0.85733 1.88105 1.27334 1.87941 1.23595 1.22280 0.84375 1.00785 0.95978 1.19970 0.82377 0.77901 0.89968 1.90774 1.48859 1.47316 1.51424 1.45807 1.13345 1.68892 1.08820 1.20998 0.99476 0.94169 0.81051 0.88024 1.22193 1.00986 0.97699 1.01137 1.22195 0.96609 0.95871 1.02406 1.20155 0.88876 0.89903 0.94356 0.93542 1.22444 0.98557 1.01390 1.00125 1.42405 1.31268 1.51853 1.11950 1.19929 1.07570 1.19371 0.98878 0.92148 1.25677 1.00351 1.03311 0.94820 1.70871 1.37837 1.32558 1.17565 0.83296 0.75944 0.75070 0.74928 1.21043 1.22381 1.22419 1.83842 0.96973 1.10848 1.63426 0.88795 0.88739 0.89529 0.89438 0.90167 0.90042 0.89731 0.77218 0.93000 0.92410 0.91730 0.90714 0.91836 0.93668 0.92844 0.94601 0.80114 0.93395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.47 10.48 36.00 0.38 -0.09 16 2 C -0.02 -0.22 7.53 -13.30 -0.10 -0.32 16 3 N -0.26 -3.70 11.66 32.58 0.38 -3.32 16 4 N -0.24 -3.54 11.66 32.58 0.38 -3.16 16 5 C -0.02 -0.29 7.16 -13.30 -0.10 -0.38 16 6 C 0.14 1.49 6.53 36.01 0.24 1.73 16 7 O -0.35 -5.14 9.86 -55.14 -0.54 -5.68 16 8 C 0.05 0.54 6.42 36.01 0.23 0.77 16 9 C 0.51 8.48 7.87 -10.98 -0.09 8.40 16 10 O -0.51 -11.39 16.16 -14.36 -0.23 -11.63 16 11 N -0.72 -10.03 4.45 -53.80 -0.24 -10.27 16 12 C 0.15 2.35 2.52 -67.93 -0.17 2.18 16 13 H 0.10 2.17 7.06 -51.93 -0.37 1.80 16 14 C -0.16 -2.22 9.48 37.16 0.35 -1.87 16 15 C -0.13 -1.95 4.29 -26.73 -0.11 -2.07 16 16 C 0.18 3.30 2.84 -67.93 -0.19 3.10 16 17 H 0.05 0.88 7.56 -51.93 -0.39 0.49 16 18 C -0.16 -2.84 9.49 37.16 0.35 -2.49 16 19 N -0.73 -17.81 4.49 -53.43 -0.24 -18.05 16 20 C -0.33 -9.11 9.93 -15.06 -0.15 -9.26 16 21 H 0.06 1.67 7.83 -52.48 -0.41 1.25 16 22 C -0.04 -1.29 5.50 -17.43 -0.10 -1.39 16 23 N -0.94 -29.70 13.70 55.49 0.76 -28.94 16 24 Si 1.08 26.48 29.92 -169.99 -5.09 21.40 16 25 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.30 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.30 -6.90 7.11 56.52 0.40 -6.50 16 28 S 0.21 2.09 23.04 -107.50 -2.48 -0.39 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.39 4.05 8.60 -40.82 -0.35 3.70 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.37 9.36 6.63 -40.82 -0.27 9.09 16 46 H 0.25 7.90 6.77 -40.82 -0.28 7.62 16 LS Contribution 402.88 15.07 6.07 6.07 Total: -1.00 -39.39 402.88 -7.89 -47.28 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -7.21 Total: 8.37 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: 0.54 Total: -1.69 kcal Atomic # 7 Polarization: -64.77 SS G_CDS: 1.04 Total: -63.73 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.78 Total: -17.31 kcal Atomic # 14 Polarization: 26.48 SS G_CDS: -5.09 Total: 21.40 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.48 Total: -0.39 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -39.39 -7.89 -47.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134876708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.598 kcal (2) G-P(sol) polarization free energy of solvation -39.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds