Wall clock time and date at job start Wed Apr 1 2020 01:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29419 * 125.69745 * 2 1 4 4 N 1.26405 * 116.47741 * 179.75065 * 3 2 1 5 5 C 1.29418 * 116.47034 * 0.53462 * 4 3 2 6 6 C 1.50699 * 125.69146 * 179.77082 * 5 4 3 7 7 O 1.42900 * 109.47176 * 89.69299 * 6 5 4 8 8 C 1.42902 * 113.99794 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.47041 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99543 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99854 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99607 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47605 * 34.99616 * 12 11 9 14 14 C 1.53005 * 109.47295 * 274.99588 * 12 11 9 15 15 C 1.53006 * 109.47329 * 155.00046 * 12 11 9 16 16 C 1.52997 * 109.46841 * 295.00084 * 15 12 11 17 17 H 1.09005 * 109.47159 * 54.99606 * 16 15 12 18 18 C 1.52999 * 109.47264 * 174.99605 * 16 15 12 19 19 N 1.46498 * 109.47167 * 294.99436 * 16 15 12 20 20 C 1.36935 * 120.00239 * 154.99975 * 19 16 15 21 21 H 1.08004 * 120.00069 * 0.02562 * 20 19 16 22 22 C 1.38811 * 120.00368 * 180.02562 * 20 19 16 23 23 N 1.31624 * 119.99540 * 359.72375 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47364 * 179.72253 * 24 22 20 26 26 H 1.48508 * 109.46883 * 299.72375 * 24 22 20 27 27 H 1.48497 * 109.46870 * 59.72186 * 24 22 20 28 28 S 1.71219 * 108.61018 * 359.50377 * 5 4 3 29 29 H 1.09004 * 109.46728 * 269.95757 * 1 2 3 30 30 H 1.08994 * 109.46875 * 29.95465 * 1 2 3 31 31 H 1.09003 * 109.47005 * 149.96074 * 1 2 3 32 32 H 1.09003 * 109.47323 * 329.69202 * 6 5 4 33 33 H 1.08998 * 109.46658 * 209.69179 * 6 5 4 34 34 H 1.08993 * 109.47603 * 59.99868 * 8 7 6 35 35 H 1.09003 * 109.47137 * 299.99481 * 8 7 6 36 36 H 0.97002 * 120.00356 * 359.97438 * 11 9 8 37 37 H 1.08999 * 109.47043 * 300.01013 * 14 12 11 38 38 H 1.09001 * 109.46484 * 60.00332 * 14 12 11 39 39 H 1.08994 * 109.47185 * 180.02562 * 14 12 11 40 40 H 1.08996 * 109.47489 * 174.99502 * 15 12 11 41 41 H 1.09001 * 109.46720 * 54.99468 * 15 12 11 42 42 H 1.09005 * 109.47033 * 59.99923 * 18 16 15 43 43 H 1.08994 * 109.47214 * 179.97438 * 18 16 15 44 44 H 1.08994 * 109.47102 * 299.99987 * 18 16 15 45 45 H 0.97004 * 119.99747 * 335.00715 * 19 16 15 46 46 H 0.97000 * 120.00481 * 0.27542 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0510 0.0000 4 7 3.5099 0.8485 0.0049 5 6 3.8937 -0.3874 -0.0014 6 6 5.3233 -0.8641 -0.0023 7 8 5.7758 -1.0153 1.3447 8 6 7.1275 -1.4654 1.4566 9 6 7.4971 -1.5884 2.9125 10 8 6.6832 -1.3168 3.7697 11 7 8.7320 -2.0001 3.2618 12 6 9.0910 -2.1201 4.6770 13 1 8.2221 -2.4519 5.2455 14 6 9.5553 -0.7603 5.2026 15 6 10.2214 -3.1396 4.8318 16 6 9.7179 -4.5253 4.4230 17 1 9.3085 -4.4800 3.4137 18 6 10.8792 -5.5208 4.4580 19 7 8.6739 -4.9599 5.3543 20 6 7.7334 -5.8703 4.9523 21 1 7.7614 -6.2683 3.9487 22 6 6.7439 -6.2818 5.8346 23 7 6.7130 -5.8008 7.0595 24 14 5.4613 -7.5243 5.2864 25 1 4.5280 -7.8001 6.4081 26 1 4.7018 -6.9760 4.1340 27 1 6.1343 -8.7844 4.8813 28 16 2.5061 -1.3905 -0.0010 29 1 -0.3633 -0.0008 1.0277 30 1 -0.3633 0.8904 -0.5131 31 1 -0.3633 -0.8897 -0.5145 32 1 5.9493 -0.1346 -0.5161 33 1 5.3861 -1.8231 -0.5165 34 1 7.7906 -0.7481 0.9732 35 1 7.2283 -2.4368 0.9726 36 1 9.3827 -2.2176 2.5762 37 1 10.4241 -0.4284 4.6341 38 1 8.7500 -0.0340 5.0924 39 1 9.8228 -0.8497 6.2554 40 1 10.5489 -3.1640 5.8711 41 1 11.0578 -2.8542 4.1938 42 1 11.2886 -5.5661 5.4673 43 1 10.5204 -6.5080 4.1672 44 1 11.6559 -5.1974 3.7651 45 1 8.6489 -4.6027 6.2558 46 1 7.3792 -5.1559 7.3443 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134876708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:02 Heat of formation + Delta-G solvation = -40.010582 kcal Electronic energy + Delta-G solvation = -27344.657930 eV Core-core repulsion = 23396.028637 eV Total energy + Delta-G solvation = -3948.629293 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.151 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.43391 -40.99323 -39.09572 -38.21542 -36.23198 -34.46898 -34.17918 -32.44626 -31.40999 -30.17592 -28.84487 -27.67522 -27.33900 -25.53695 -25.32300 -22.81409 -21.77446 -21.34155 -21.04043 -20.47773 -19.45731 -18.44349 -18.11975 -17.32228 -17.10669 -16.77706 -16.57776 -16.44984 -15.96997 -15.60941 -15.43166 -15.28891 -14.65858 -14.55219 -14.45392 -14.30843 -14.00231 -13.58886 -13.54193 -13.46758 -13.22501 -13.13802 -13.00976 -12.89948 -12.76196 -12.51430 -12.18368 -11.90971 -11.86209 -11.59265 -11.56950 -11.39890 -11.16733 -11.00469 -10.89247 -10.86323 -10.77628 -10.69785 -10.05320 -9.04234 -8.33252 -5.24855 -0.75809 -0.17816 0.24136 1.28111 1.53979 1.62992 1.65463 1.80475 1.90198 2.70978 2.73488 3.16975 3.46030 3.51819 3.66858 3.73214 3.80874 3.89882 4.04576 4.06905 4.16637 4.23180 4.29094 4.32008 4.40143 4.47226 4.56657 4.61554 4.68198 4.72173 4.75965 4.86869 4.95373 5.01983 5.03100 5.15698 5.26726 5.35587 5.55850 5.56272 5.65809 5.83091 6.54276 6.61849 7.17068 7.33753 7.39033 8.07381 8.19303 9.19189 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.009755 B = 0.002888 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2869.681209 B = 9693.761417 C =11671.278610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.019 4.019 3 N -0.305 5.305 4 N -0.276 5.276 5 C -0.043 4.043 6 C 0.140 3.860 7 O -0.397 6.397 8 C 0.051 3.949 9 C 0.501 3.499 10 O -0.584 6.584 11 N -0.699 5.699 12 C 0.149 3.851 13 H 0.038 0.962 14 C -0.152 4.152 15 C -0.118 4.118 16 C 0.168 3.832 17 H 0.047 0.953 18 C -0.155 4.155 19 N -0.745 5.745 20 C -0.313 4.313 21 H 0.064 0.936 22 C -0.112 4.112 23 N -0.982 5.982 24 Si 1.120 2.880 25 H -0.297 1.297 26 H -0.282 1.282 27 H -0.273 1.273 28 S 0.239 5.761 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.114 0.886 32 H 0.108 0.892 33 H 0.114 0.886 34 H 0.126 0.874 35 H 0.116 0.884 36 H 0.417 0.583 37 H 0.087 0.913 38 H 0.033 0.967 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.112 0.888 42 H 0.038 0.962 43 H 0.028 0.972 44 H 0.080 0.920 45 H 0.354 0.646 46 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.537 9.245 -21.479 23.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.297 4.297 3 N -0.144 5.144 4 N -0.116 5.116 5 C -0.323 4.323 6 C 0.060 3.940 7 O -0.316 6.316 8 C -0.028 4.028 9 C 0.288 3.712 10 O -0.463 6.463 11 N -0.354 5.354 12 C 0.044 3.956 13 H 0.057 0.943 14 C -0.210 4.210 15 C -0.156 4.156 16 C 0.060 3.940 17 H 0.065 0.935 18 C -0.215 4.215 19 N -0.387 5.387 20 C -0.445 4.445 21 H 0.082 0.918 22 C -0.303 4.303 23 N -0.631 5.631 24 Si 0.946 3.054 25 H -0.223 1.223 26 H -0.209 1.209 27 H -0.199 1.199 28 S 0.483 5.517 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.132 0.868 32 H 0.126 0.874 33 H 0.132 0.868 34 H 0.144 0.856 35 H 0.133 0.867 36 H 0.255 0.745 37 H 0.106 0.894 38 H 0.052 0.948 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.131 0.869 42 H 0.058 0.942 43 H 0.047 0.953 44 H 0.099 0.901 45 H 0.186 0.814 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.405 8.864 -20.487 22.366 hybrid contribution 1.539 1.011 0.110 1.845 sum 0.134 9.875 -20.377 22.644 Atomic orbital electron populations 1.20683 0.80871 1.06501 1.05711 1.30031 1.06294 0.91812 1.01557 1.71428 0.97025 1.28475 1.17445 1.71352 1.07395 1.18686 1.14166 1.29102 1.04089 0.92917 1.06150 1.20986 0.85698 1.03003 0.84304 1.88038 1.28800 1.88501 1.26236 1.22414 0.84226 1.03679 0.92436 1.21012 0.82048 0.76414 0.91766 1.90744 1.51014 1.50644 1.53865 1.45671 1.13401 1.67632 1.08659 1.20778 0.97520 0.95705 0.81631 0.94340 1.22089 1.01357 0.95602 1.01957 1.22094 0.97196 0.92884 1.03415 1.20490 0.88063 0.92356 0.93093 0.93483 1.22294 0.98755 0.99489 1.00985 1.42657 1.32261 1.51368 1.12443 1.20272 1.07319 1.18371 0.98553 0.91774 1.27037 1.03038 1.05512 0.94721 1.70980 1.38683 1.34227 1.19186 0.82733 0.73971 0.74157 0.74572 1.22335 1.20860 1.19916 1.83622 0.95652 1.09839 1.62617 0.87914 0.87907 0.86775 0.87434 0.86834 0.85618 0.86671 0.74516 0.89412 0.94763 0.91378 0.90865 0.86940 0.94243 0.95281 0.90095 0.81431 0.94790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.48 71.24 0.75 -0.10 16 2 C -0.02 -0.40 7.53 88.46 0.67 0.27 16 3 N -0.30 -8.68 11.66 -50.84 -0.59 -9.28 16 4 N -0.28 -8.33 11.66 -50.85 -0.59 -8.93 16 5 C -0.04 -1.07 7.16 88.46 0.63 -0.44 16 6 C 0.14 2.66 6.53 71.24 0.47 3.13 16 7 O -0.40 -11.24 9.86 -129.94 -1.28 -12.53 16 8 C 0.05 1.09 6.42 71.24 0.46 1.54 16 9 C 0.50 16.38 7.87 87.66 0.69 17.06 16 10 O -0.58 -27.42 16.16 16.00 0.26 -27.16 16 11 N -0.70 -18.43 4.45 -442.51 -1.97 -20.40 16 12 C 0.15 4.67 2.52 45.00 0.11 4.79 16 13 H 0.04 1.73 7.06 -2.39 -0.02 1.72 16 14 C -0.15 -4.01 9.48 71.98 0.68 -3.33 16 15 C -0.12 -3.18 4.29 30.60 0.13 -3.05 16 16 C 0.17 5.95 2.84 44.99 0.13 6.08 16 17 H 0.05 1.67 7.56 -2.38 -0.02 1.65 16 18 C -0.16 -4.92 9.49 71.98 0.68 -4.24 16 19 N -0.75 -36.77 4.49 -322.94 -1.45 -38.22 16 20 C -0.31 -17.65 9.93 84.03 0.83 -16.81 16 21 H 0.06 3.50 7.83 -2.91 -0.02 3.48 16 22 C -0.11 -6.74 5.50 84.86 0.47 -6.27 16 23 N -0.98 -64.16 13.70 21.65 0.30 -63.87 16 24 Si 1.12 53.86 29.92 68.60 2.05 55.92 16 25 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 26 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 27 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 28 S 0.24 4.63 23.04 -56.49 -1.30 3.32 16 29 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.42 6.97 8.60 -92.71 -0.80 6.17 16 37 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 43 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.35 18.90 6.63 -92.71 -0.61 18.29 16 46 H 0.24 15.79 6.77 -92.71 -0.63 15.16 16 Total: -1.00 -94.14 402.88 1.85 -92.29 By element: Atomic # 1 Polarization: 30.49 SS G_CDS: -0.27 Total: 30.22 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 6.70 Total: -1.37 kcal Atomic # 7 Polarization: -136.38 SS G_CDS: -4.31 Total: -140.69 kcal Atomic # 8 Polarization: -38.67 SS G_CDS: -1.02 Total: -39.69 kcal Atomic # 14 Polarization: 53.86 SS G_CDS: 2.05 Total: 55.92 kcal Atomic # 16 Polarization: 4.63 SS G_CDS: -1.30 Total: 3.32 kcal Total: -94.14 1.85 -92.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134876708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.276 kcal (2) G-P(sol) polarization free energy of solvation -94.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds