Wall clock time and date at job start Wed Apr 1 2020 01:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39720 * 119.59104 * 291.59143 * 3 2 1 5 5 C 1.37973 * 119.20522 * 180.02562 * 4 3 2 6 6 C 1.40244 * 118.39539 * 359.97438 * 5 4 3 7 7 C 1.47675 * 120.43729 * 180.02562 * 6 5 4 8 8 O 1.21576 * 120.00165 * 359.97099 * 7 6 5 9 9 N 1.34773 * 119.99766 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00118 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47313 * 179.97438 * 10 9 7 12 12 C 1.30999 * 119.99816 * 127.16048 * 11 10 9 13 13 C 1.50701 * 120.00121 * 7.55813 * 12 11 10 14 14 N 1.46898 * 109.47077 * 127.01154 * 13 12 11 15 15 C 1.46901 * 111.00015 * 180.02562 * 14 13 12 16 16 C 1.50695 * 109.47301 * 179.97438 * 15 14 13 17 17 O 1.21291 * 119.99779 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00087 * 179.97438 * 16 15 14 19 19 C 1.37101 * 120.00067 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99588 * 0.02562 * 19 18 16 21 21 C 1.38944 * 120.00013 * 179.97438 * 19 18 16 22 22 N 1.31418 * 119.99916 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00229 * 0.02562 * 21 19 18 24 24 H 1.48507 * 109.47006 * 89.99658 * 23 21 19 25 25 H 1.48496 * 109.47487 * 209.99578 * 23 21 19 26 26 H 1.48502 * 109.47067 * 329.99869 * 23 21 19 27 27 C 1.39653 * 119.12075 * 0.02562 * 6 5 4 28 28 N 1.31486 * 120.71181 * 0.02562 * 27 6 5 29 29 H 4.51263 * 14.17448 * 0.02562 * 4 2 1 30 30 H 1.08004 * 120.40112 * 0.02562 * 4 3 2 31 31 H 1.07990 * 120.80394 * 180.02562 * 5 4 3 32 32 H 0.97007 * 120.00199 * 359.97438 * 9 7 6 33 33 H 1.09001 * 109.47226 * 300.00026 * 10 9 7 34 34 H 1.09008 * 109.46910 * 59.99999 * 10 9 7 35 35 H 1.08001 * 120.00408 * 307.16350 * 11 10 9 36 36 H 1.08003 * 120.00241 * 187.56389 * 12 11 10 37 37 H 1.09006 * 109.47242 * 247.00972 * 13 12 11 38 38 H 1.09003 * 109.46770 * 7.00539 * 13 12 11 39 39 H 1.00895 * 111.00277 * 56.04267 * 14 13 12 40 40 H 1.09006 * 109.46709 * 299.99651 * 15 14 13 41 41 H 1.08998 * 109.47655 * 59.99300 * 15 14 13 42 42 H 0.97001 * 120.00145 * 0.02562 * 18 16 15 43 43 H 0.97002 * 119.99615 * 180.02562 * 22 21 19 44 44 H 1.07994 * 119.64537 * 179.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2961 -0.4461 1.1297 5 6 4.6758 -0.4416 1.1213 6 6 5.3342 0.0143 -0.0300 7 6 6.8097 0.0380 -0.0882 8 8 7.4618 -0.3388 0.8662 9 7 7.4332 0.4774 -1.1993 10 6 8.8969 0.5014 -1.2568 11 6 9.3383 1.0305 -2.5971 12 6 10.1846 2.0284 -2.6609 13 6 10.8473 2.5358 -1.4061 14 7 12.3038 2.5576 -1.5960 15 6 12.9847 3.0474 -0.3900 16 6 14.4737 3.0551 -0.6219 17 8 14.9235 2.6882 -1.6869 18 7 15.3056 3.4697 0.3541 19 6 16.6602 3.4762 0.1433 20 1 17.0607 3.1495 -0.8050 21 6 17.5178 3.9041 1.1493 22 7 18.8163 3.9108 0.9471 23 14 16.8251 4.4699 2.7892 24 1 16.7240 3.3097 3.7107 25 1 17.7240 5.4940 3.3795 26 1 15.4765 5.0558 2.5812 27 6 4.5761 0.4456 -1.1207 28 7 3.2622 0.4272 -1.0745 29 1 -1.0500 -0.0006 0.0001 30 1 2.7561 -0.7909 1.9992 31 1 5.2352 -0.7817 1.9801 32 1 6.9129 0.7777 -1.9609 33 1 9.2811 1.1466 -0.4667 34 1 9.2825 -0.5090 -1.1206 35 1 8.9569 0.5871 -3.5050 36 1 10.4075 2.4875 -3.6127 37 1 10.4938 3.5442 -1.1908 38 1 10.5993 1.8782 -0.5729 39 1 12.5551 3.1091 -2.4027 40 1 12.6461 4.0593 -0.1673 41 1 12.7515 2.3932 0.4500 42 1 14.9459 3.7628 1.2059 43 1 19.4150 4.2092 1.6495 44 1 5.0744 0.7987 -2.0114 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568950607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:18 Heat of formation + Delta-G solvation = 58.246298 kcal Electronic energy + Delta-G solvation = -26407.006629 eV Core-core repulsion = 22327.194122 eV Total energy + Delta-G solvation = -4079.812506 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.20034 -39.59700 -38.53563 -37.16199 -35.27572 -34.57341 -33.96345 -33.17486 -33.04819 -31.65518 -31.30801 -28.26901 -26.75685 -25.15027 -24.61504 -24.17781 -23.09166 -21.40894 -19.98942 -19.75205 -19.29537 -18.43893 -17.85794 -17.46185 -16.63352 -16.44969 -16.01860 -15.86917 -15.54142 -15.43143 -15.03740 -14.92147 -14.56882 -14.41728 -14.05732 -13.83092 -13.74376 -13.42302 -13.22858 -13.05051 -12.82436 -12.57733 -12.28929 -11.88474 -11.83794 -11.70282 -11.49802 -11.15528 -10.95290 -10.74547 -10.58970 -10.58927 -10.12312 -9.97168 -9.76194 -9.57005 -9.51942 -9.24791 -8.59815 -8.19185 -8.13828 -6.30695 -3.82193 -0.29369 0.56211 1.69544 1.92240 1.99969 2.69745 2.80850 3.03148 3.08092 3.15930 3.23519 3.39796 3.74030 3.89482 4.09671 4.10575 4.19585 4.23212 4.38804 4.45823 4.49239 4.73290 4.87511 4.87752 5.05729 5.06223 5.20398 5.23361 5.36882 5.41672 5.45811 5.51311 5.62885 5.63705 5.79330 5.83004 5.91554 5.94346 6.27100 6.48682 6.79815 6.98327 7.03040 7.12043 7.52502 7.58620 7.69742 8.14760 8.60090 8.95267 9.42783 9.82774 10.82416 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.020949 B = 0.001443 C = 0.001378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.283835 B =19400.717299 C =20307.077292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.158 4.158 3 C 0.249 3.751 4 C -0.152 4.152 5 C -0.012 4.012 6 C -0.181 4.181 7 C 0.561 3.439 8 O -0.528 6.528 9 N -0.718 5.718 10 C 0.140 3.860 11 C -0.185 4.185 12 C -0.108 4.108 13 C 0.069 3.931 14 N -0.663 5.663 15 C 0.047 3.953 16 C 0.450 3.550 17 O -0.565 6.565 18 N -0.590 5.590 19 C -0.306 4.306 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.142 3.858 28 N -0.473 5.473 29 H 0.232 0.768 30 H 0.149 0.851 31 H 0.156 0.844 32 H 0.400 0.600 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.038 0.962 38 H 0.086 0.914 39 H 0.351 0.649 40 H 0.045 0.955 41 H 0.088 0.912 42 H 0.371 0.629 43 H 0.273 0.727 44 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.369 -6.024 -1.119 37.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.158 4.158 3 C 0.115 3.885 4 C -0.171 4.171 5 C -0.038 4.038 6 C -0.186 4.186 7 C 0.347 3.653 8 O -0.405 6.405 9 N -0.370 5.370 10 C 0.018 3.982 11 C -0.204 4.204 12 C -0.128 4.128 13 C -0.060 4.060 14 N -0.295 5.295 15 C -0.086 4.086 16 C 0.236 3.764 17 O -0.446 6.446 18 N -0.230 5.230 19 C -0.434 4.434 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.018 4.018 28 N -0.181 5.181 29 H 0.249 0.751 30 H 0.166 0.834 31 H 0.174 0.826 32 H 0.236 0.764 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.056 0.944 38 H 0.104 0.896 39 H 0.171 0.829 40 H 0.063 0.937 41 H 0.107 0.893 42 H 0.203 0.797 43 H 0.084 0.916 44 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -36.677 -6.870 -1.627 37.350 hybrid contribution -0.443 1.324 1.561 2.094 sum -37.120 -5.546 -0.066 37.532 Atomic orbital electron populations 1.25031 0.95689 0.96173 0.97473 1.19249 0.91024 1.03094 1.02460 1.16747 0.88260 0.93766 0.89770 1.22075 0.94409 1.01339 0.99315 1.21723 0.93586 0.91296 0.97224 1.21129 0.94643 1.05677 0.97149 1.17940 0.86606 0.77824 0.82954 1.90837 1.66725 1.47103 1.35810 1.45909 1.08013 1.65991 1.17078 1.20576 0.78524 1.02626 0.96471 1.22655 1.02337 0.98079 0.97367 1.22857 0.95316 0.95377 0.99204 1.21301 0.88432 0.99729 0.96542 1.60076 1.04187 1.59695 1.05579 1.21732 0.94064 0.98783 0.93994 1.19676 0.87122 0.83989 0.85654 1.90566 1.77355 1.50868 1.25857 1.42203 1.07365 1.59432 1.13958 1.19440 0.78935 1.41672 1.03399 0.86262 1.25031 0.95180 0.97651 0.98220 1.69627 1.01768 1.46629 1.34100 0.86672 0.78993 0.79449 0.84272 1.19551 1.20183 1.19540 1.22943 0.88793 0.93071 0.96983 1.67752 1.09640 1.14590 1.26079 0.75138 0.83364 0.82620 0.76442 0.89673 0.90215 0.86208 0.86372 0.94375 0.89614 0.82896 0.93664 0.89336 0.79662 0.91611 0.81747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.58 19.25 29.55 0.57 -0.01 16 2 C -0.16 -1.15 13.43 -38.84 -0.52 -1.67 16 3 C 0.25 1.99 6.59 -84.91 -0.56 1.43 16 4 C -0.15 -0.95 9.77 -39.13 -0.38 -1.33 16 5 C -0.01 -0.09 9.70 -38.93 -0.38 -0.46 16 6 C -0.18 -1.37 5.89 -104.76 -0.62 -1.99 16 7 C 0.56 5.22 7.77 -12.41 -0.10 5.13 16 8 O -0.53 -6.93 16.41 5.30 0.09 -6.84 16 9 N -0.72 -5.11 5.50 -62.48 -0.34 -5.46 16 10 C 0.14 1.21 5.76 -5.19 -0.03 1.18 16 11 C -0.19 -1.42 9.63 -36.03 -0.35 -1.77 16 12 C -0.11 -0.98 9.77 -36.02 -0.35 -1.34 16 13 C 0.07 0.76 5.77 -4.98 -0.03 0.73 16 14 N -0.66 -10.03 6.11 -116.34 -0.71 -10.75 16 15 C 0.05 0.78 6.17 -4.98 -0.03 0.74 16 16 C 0.45 10.26 7.82 -10.99 -0.09 10.17 16 17 O -0.56 -15.23 15.78 5.55 0.09 -15.14 16 18 N -0.59 -14.15 5.09 -10.97 -0.06 -14.20 16 19 C -0.31 -8.71 10.16 -14.93 -0.15 -8.86 16 20 H 0.12 3.88 7.39 -52.48 -0.39 3.49 16 21 C 0.04 1.16 5.50 -17.47 -0.10 1.07 16 22 N -0.88 -25.86 13.96 55.50 0.77 -25.08 16 23 Si 0.88 19.48 27.74 -169.99 -4.71 14.77 16 24 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 27 C 0.14 0.95 10.70 -17.17 -0.18 0.76 16 28 N -0.47 -4.07 10.26 -10.79 -0.11 -4.18 16 29 H 0.23 0.08 7.80 -54.09 -0.42 -0.34 16 30 H 0.15 0.56 8.06 -52.48 -0.42 0.14 16 31 H 0.16 0.98 7.73 -52.49 -0.41 0.58 16 32 H 0.40 1.67 6.51 -40.82 -0.27 1.41 16 33 H 0.09 0.83 5.30 -51.93 -0.28 0.56 16 34 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 35 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 37 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 0.94 5.29 -51.93 -0.27 0.67 16 39 H 0.35 5.42 8.43 -39.29 -0.33 5.08 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.37 7.79 5.76 -40.82 -0.24 7.56 16 43 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.17 0.57 6.40 -52.49 -0.34 0.24 16 LS Contribution 390.94 15.07 5.89 5.89 Total: -1.00 -37.32 390.94 -7.45 -44.76 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -5.06 Total: 12.44 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -3.29 Total: 3.79 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: -0.45 Total: -59.67 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: 0.17 Total: -21.98 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.71 Total: 14.77 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.32 -7.45 -44.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568950607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.011 kcal (2) G-P(sol) polarization free energy of solvation -37.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds