Wall clock time and date at job start Wed Apr 1 2020 01:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39720 * 119.59104 * 291.59143 * 3 2 1 5 5 C 1.37973 * 119.20522 * 180.02562 * 4 3 2 6 6 C 1.40244 * 118.39539 * 359.97438 * 5 4 3 7 7 C 1.47675 * 120.43729 * 180.02562 * 6 5 4 8 8 O 1.21576 * 120.00165 * 359.97099 * 7 6 5 9 9 N 1.34773 * 119.99766 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00118 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47313 * 179.97438 * 10 9 7 12 12 C 1.30999 * 119.99816 * 127.16048 * 11 10 9 13 13 C 1.50701 * 120.00121 * 7.55813 * 12 11 10 14 14 N 1.46898 * 109.47077 * 127.01154 * 13 12 11 15 15 C 1.46901 * 111.00015 * 180.02562 * 14 13 12 16 16 C 1.50695 * 109.47301 * 179.97438 * 15 14 13 17 17 O 1.21291 * 119.99779 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00087 * 179.97438 * 16 15 14 19 19 C 1.37101 * 120.00067 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99588 * 0.02562 * 19 18 16 21 21 C 1.38944 * 120.00013 * 179.97438 * 19 18 16 22 22 N 1.31418 * 119.99916 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00229 * 0.02562 * 21 19 18 24 24 H 1.48507 * 109.47006 * 89.99658 * 23 21 19 25 25 H 1.48496 * 109.47487 * 209.99578 * 23 21 19 26 26 H 1.48502 * 109.47067 * 329.99869 * 23 21 19 27 27 C 1.39653 * 119.12075 * 0.02562 * 6 5 4 28 28 N 1.31486 * 120.71181 * 0.02562 * 27 6 5 29 29 H 4.51263 * 14.17448 * 0.02562 * 4 2 1 30 30 H 1.08004 * 120.40112 * 0.02562 * 4 3 2 31 31 H 1.07990 * 120.80394 * 180.02562 * 5 4 3 32 32 H 0.97007 * 120.00199 * 359.97438 * 9 7 6 33 33 H 1.09001 * 109.47226 * 300.00026 * 10 9 7 34 34 H 1.09008 * 109.46910 * 59.99999 * 10 9 7 35 35 H 1.08001 * 120.00408 * 307.16350 * 11 10 9 36 36 H 1.08003 * 120.00241 * 187.56389 * 12 11 10 37 37 H 1.09006 * 109.47242 * 247.00972 * 13 12 11 38 38 H 1.09003 * 109.46770 * 7.00539 * 13 12 11 39 39 H 1.00895 * 111.00277 * 56.04267 * 14 13 12 40 40 H 1.09006 * 109.46709 * 299.99651 * 15 14 13 41 41 H 1.08998 * 109.47655 * 59.99300 * 15 14 13 42 42 H 0.97001 * 120.00145 * 0.02562 * 18 16 15 43 43 H 0.97002 * 119.99615 * 180.02562 * 22 21 19 44 44 H 1.07994 * 119.64537 * 179.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2961 -0.4461 1.1297 5 6 4.6758 -0.4416 1.1213 6 6 5.3342 0.0143 -0.0300 7 6 6.8097 0.0380 -0.0882 8 8 7.4618 -0.3388 0.8662 9 7 7.4332 0.4774 -1.1993 10 6 8.8969 0.5014 -1.2568 11 6 9.3383 1.0305 -2.5971 12 6 10.1846 2.0284 -2.6609 13 6 10.8473 2.5358 -1.4061 14 7 12.3038 2.5576 -1.5960 15 6 12.9847 3.0474 -0.3900 16 6 14.4737 3.0551 -0.6219 17 8 14.9235 2.6882 -1.6869 18 7 15.3056 3.4697 0.3541 19 6 16.6602 3.4762 0.1433 20 1 17.0607 3.1495 -0.8050 21 6 17.5178 3.9041 1.1493 22 7 18.8163 3.9108 0.9471 23 14 16.8251 4.4699 2.7892 24 1 16.7240 3.3097 3.7107 25 1 17.7240 5.4940 3.3795 26 1 15.4765 5.0558 2.5812 27 6 4.5761 0.4456 -1.1207 28 7 3.2622 0.4272 -1.0745 29 1 -1.0500 -0.0006 0.0001 30 1 2.7561 -0.7909 1.9992 31 1 5.2352 -0.7817 1.9801 32 1 6.9129 0.7777 -1.9609 33 1 9.2811 1.1466 -0.4667 34 1 9.2825 -0.5090 -1.1206 35 1 8.9569 0.5871 -3.5050 36 1 10.4075 2.4875 -3.6127 37 1 10.4938 3.5442 -1.1908 38 1 10.5993 1.8782 -0.5729 39 1 12.5551 3.1091 -2.4027 40 1 12.6461 4.0593 -0.1673 41 1 12.7515 2.3932 0.4500 42 1 14.9459 3.7628 1.2059 43 1 19.4150 4.2092 1.6495 44 1 5.0744 0.7987 -2.0114 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568950607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:18 Heat of formation + Delta-G solvation = 27.981082 kcal Electronic energy + Delta-G solvation = -26408.319027 eV Core-core repulsion = 22327.194122 eV Total energy + Delta-G solvation = -4081.124905 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.148 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.76915 -40.35648 -40.21712 -38.08680 -36.34294 -35.83623 -35.03839 -33.97955 -33.71039 -33.66743 -31.83204 -29.44087 -27.71316 -26.40594 -25.45773 -24.70207 -24.37720 -22.06719 -21.34369 -20.53600 -20.41969 -20.02170 -18.69577 -18.09968 -17.66816 -17.18933 -16.99872 -16.83007 -16.61263 -16.52898 -16.08676 -15.85505 -15.56205 -15.30428 -15.15549 -14.99525 -14.67419 -14.45631 -14.29676 -14.22735 -13.95390 -13.74423 -13.45991 -13.25960 -12.99965 -12.74171 -12.41697 -12.34645 -11.98263 -11.93037 -11.68910 -11.52353 -11.44170 -11.12019 -10.69252 -10.47011 -10.44575 -10.25584 -10.10611 -9.87895 -9.26574 -8.41976 -6.03007 -0.81833 0.07335 1.02093 1.29914 1.35527 1.37882 1.44062 1.60232 1.94243 2.12574 2.16867 2.22545 2.78899 2.85603 2.89104 3.14413 3.46305 3.53364 3.58677 3.71741 3.75260 3.92922 4.01154 4.06401 4.13129 4.28238 4.41440 4.47043 4.49166 4.51482 4.63999 4.70733 4.78364 4.90474 4.97700 5.02742 5.24559 5.39151 5.51376 5.60015 5.80374 5.89916 6.02513 6.37571 6.39547 6.42894 6.58969 6.62459 6.87060 7.05689 7.38730 7.94970 8.75672 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.020949 B = 0.001443 C = 0.001378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.283835 B =19400.717299 C =20307.077292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.219 4.219 3 C 0.238 3.762 4 C -0.149 4.149 5 C -0.017 4.017 6 C -0.192 4.192 7 C 0.563 3.437 8 O -0.573 6.573 9 N -0.703 5.703 10 C 0.139 3.861 11 C -0.165 4.165 12 C -0.125 4.125 13 C 0.071 3.929 14 N -0.683 5.683 15 C 0.061 3.939 16 C 0.448 3.552 17 O -0.614 6.614 18 N -0.591 5.591 19 C -0.331 4.331 20 H 0.056 0.944 21 C -0.013 4.013 22 N -0.934 5.934 23 Si 0.964 3.036 24 H -0.258 1.258 25 H -0.274 1.274 26 H -0.231 1.231 27 C 0.148 3.852 28 N -0.498 5.498 29 H 0.271 0.729 30 H 0.170 0.830 31 H 0.158 0.842 32 H 0.416 0.584 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.144 0.856 36 H 0.127 0.873 37 H 0.053 0.947 38 H 0.087 0.913 39 H 0.347 0.653 40 H 0.079 0.921 41 H 0.111 0.889 42 H 0.390 0.610 43 H 0.279 0.721 44 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -41.455 -5.311 0.221 41.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.220 4.220 3 C 0.104 3.896 4 C -0.169 4.169 5 C -0.043 4.043 6 C -0.198 4.198 7 C 0.350 3.650 8 O -0.453 6.453 9 N -0.355 5.355 10 C 0.017 3.983 11 C -0.184 4.184 12 C -0.144 4.144 13 C -0.057 4.057 14 N -0.315 5.315 15 C -0.072 4.072 16 C 0.236 3.764 17 O -0.498 6.498 18 N -0.232 5.232 19 C -0.460 4.460 20 H 0.074 0.926 21 C -0.211 4.211 22 N -0.574 5.574 23 Si 0.784 3.216 24 H -0.183 1.183 25 H -0.199 1.199 26 H -0.154 1.154 27 C -0.012 4.012 28 N -0.207 5.207 29 H 0.287 0.713 30 H 0.188 0.812 31 H 0.176 0.824 32 H 0.255 0.745 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.161 0.839 36 H 0.145 0.855 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.166 0.834 40 H 0.097 0.903 41 H 0.129 0.871 42 H 0.225 0.775 43 H 0.089 0.911 44 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -40.819 -6.146 -0.323 41.281 hybrid contribution 0.730 1.021 1.004 1.607 sum -40.090 -5.125 0.681 40.422 Atomic orbital electron populations 1.26011 0.96396 0.93252 0.94776 1.19667 0.91681 1.05624 1.05017 1.17095 0.89124 0.93390 0.90009 1.22259 0.94053 1.00876 0.99691 1.21871 0.94055 0.91105 0.97270 1.21045 0.93622 1.07078 0.98011 1.18172 0.87156 0.77043 0.82670 1.90811 1.67689 1.49344 1.37456 1.45753 1.07598 1.65014 1.17118 1.20497 0.79223 1.01752 0.96855 1.22756 1.01296 0.96809 0.97559 1.22851 0.96270 0.96431 0.98858 1.21337 0.85886 1.00770 0.97685 1.60073 1.06712 1.59886 1.04873 1.21644 0.88781 1.01416 0.95331 1.20965 0.89828 0.81293 0.84317 1.90541 1.79043 1.52316 1.27935 1.42034 1.05697 1.60221 1.15275 1.19030 0.81613 1.43543 1.01827 0.92604 1.26093 0.95137 0.96803 1.03113 1.69806 1.03845 1.47607 1.36173 0.85379 0.79920 0.79253 0.77062 1.18285 1.19899 1.15445 1.23321 0.88338 0.92044 0.97469 1.67799 1.10347 1.15741 1.26815 0.71333 0.81234 0.82427 0.74544 0.90646 0.91452 0.83873 0.85486 0.92902 0.89542 0.83424 0.90345 0.87085 0.77461 0.91116 0.79002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.58 19.25 74.32 1.43 0.85 16 2 C -0.22 -2.94 13.43 30.02 0.40 -2.53 16 3 C 0.24 3.68 6.59 40.58 0.27 3.95 16 4 C -0.15 -1.78 9.77 22.57 0.22 -1.56 16 5 C -0.02 -0.23 9.70 22.69 0.22 -0.01 16 6 C -0.19 -2.80 5.89 -19.95 -0.12 -2.92 16 7 C 0.56 10.13 7.77 86.74 0.67 10.81 16 8 O -0.57 -15.12 16.41 -3.96 -0.06 -15.19 16 9 N -0.70 -8.90 5.50 -469.86 -2.58 -11.49 16 10 C 0.14 2.20 5.76 85.63 0.49 2.70 16 11 C -0.17 -2.15 9.63 25.65 0.25 -1.90 16 12 C -0.12 -2.00 9.77 25.65 0.25 -1.75 16 13 C 0.07 1.41 5.77 85.56 0.49 1.90 16 14 N -0.68 -19.68 6.11 -521.98 -3.19 -22.87 16 15 C 0.06 1.86 6.17 85.56 0.53 2.39 16 16 C 0.45 20.43 7.82 87.66 0.69 21.12 16 17 O -0.61 -34.34 15.78 -3.06 -0.05 -34.39 16 18 N -0.59 -28.17 5.09 -306.99 -1.56 -29.73 16 19 C -0.33 -19.60 10.16 84.04 0.85 -18.75 16 20 H 0.06 3.93 7.39 -2.91 -0.02 3.91 16 21 C -0.01 -0.71 5.50 84.92 0.47 -0.24 16 22 N -0.93 -56.67 13.96 21.66 0.30 -56.37 16 23 Si 0.96 39.14 27.74 68.60 1.90 41.04 16 24 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 25 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 26 H -0.23 -7.88 6.52 99.48 0.65 -7.24 16 27 C 0.15 1.80 10.70 85.09 0.91 2.71 16 28 N -0.50 -8.21 10.26 -188.04 -1.93 -10.14 16 29 H 0.27 -0.89 7.80 -4.42 -0.03 -0.92 16 30 H 0.17 1.11 8.06 -2.91 -0.02 1.08 16 31 H 0.16 2.01 7.73 -2.92 -0.02 1.99 16 32 H 0.42 2.47 6.51 -92.70 -0.60 1.87 16 33 H 0.08 1.38 5.30 -2.39 -0.01 1.36 16 34 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 36 H 0.13 1.83 8.06 -2.91 -0.02 1.81 16 37 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 38 H 0.09 1.72 5.29 -2.39 -0.01 1.71 16 39 H 0.35 10.44 8.43 -89.70 -0.76 9.69 16 40 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 41 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 42 H 0.39 15.39 5.76 -92.71 -0.53 14.85 16 43 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 44 H 0.19 0.92 6.40 -2.91 -0.02 0.90 16 Total: -1.00 -88.06 390.94 -0.02 -88.08 By element: Atomic # 1 Polarization: 35.18 SS G_CDS: -0.87 Total: 34.31 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: 8.03 Total: 16.75 kcal Atomic # 7 Polarization: -121.64 SS G_CDS: -8.97 Total: -130.61 kcal Atomic # 8 Polarization: -49.47 SS G_CDS: -0.11 Total: -49.58 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 1.90 Total: 41.04 kcal Total: -88.06 -0.02 -88.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568950607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.066 kcal (2) G-P(sol) polarization free energy of solvation -88.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds