Wall clock time and date at job start Wed Apr 1 2020 01:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30833 * 126.46498 * 2 1 4 4 N 1.28909 * 109.74052 * 180.02562 * 3 2 1 5 5 C 1.29830 * 109.48025 * 0.02562 * 4 3 2 6 6 N 1.34697 * 126.46454 * 179.69110 * 2 1 3 7 7 C 1.46264 * 128.84449 * 0.46920 * 6 2 1 8 8 C 1.53316 * 108.66209 * 196.73613 * 7 6 2 9 9 H 1.09000 * 109.45008 * 69.52294 * 8 7 6 10 10 C 1.50702 * 109.44801 * 189.45407 * 8 7 6 11 11 O 1.21287 * 120.00171 * 0.11630 * 10 8 7 12 12 N 1.34778 * 119.99611 * 180.10907 * 10 8 7 13 13 C 1.39991 * 120.00146 * 175.50360 * 12 10 8 14 14 C 1.38913 * 120.00708 * 214.85292 * 13 12 10 15 15 C 1.38006 * 120.00375 * 179.74487 * 14 13 12 16 16 C 1.38910 * 119.99565 * 0.53084 * 15 14 13 17 17 O 1.35780 * 119.99736 * 179.76820 * 16 15 14 18 18 C 1.34811 * 117.00115 * 185.31681 * 17 16 15 19 19 H 1.08000 * 119.99821 * 354.96246 * 18 17 16 20 20 C 1.38635 * 120.00221 * 174.96218 * 18 17 16 21 21 N 1.31567 * 119.99746 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00000 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47208 * 59.99837 * 22 20 18 24 24 H 1.48498 * 109.46962 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47226 * 299.99956 * 22 20 18 26 26 C 1.38906 * 120.00612 * 359.74184 * 16 15 14 27 27 C 1.38002 * 120.00043 * 359.97438 * 26 16 15 28 28 C 1.53136 * 109.58123 * 309.48726 * 8 7 6 29 29 C 1.50801 * 128.52657 * 179.89783 * 5 4 3 30 30 H 1.09006 * 109.47218 * 90.02069 * 1 2 3 31 31 H 1.09008 * 109.47375 * 330.02538 * 1 2 3 32 32 H 1.09002 * 109.47368 * 210.02679 * 1 2 3 33 33 H 1.08999 * 109.79344 * 76.88165 * 7 6 2 34 34 H 1.09001 * 109.57490 * 316.46575 * 7 6 2 35 35 H 0.97001 * 120.00039 * 355.50861 * 12 10 8 36 36 H 1.07999 * 120.00087 * 359.97438 * 14 13 12 37 37 H 1.07997 * 120.00605 * 180.29507 * 15 14 13 38 38 H 0.97001 * 119.99861 * 180.02562 * 21 20 18 39 39 H 1.07996 * 120.00125 * 180.02562 * 26 16 15 40 40 H 1.08007 * 120.00411 * 180.02562 * 27 26 16 41 41 H 1.08999 * 109.50147 * 309.48877 * 28 8 7 42 42 H 1.09003 * 109.49814 * 189.38626 * 28 8 7 43 43 H 1.08995 * 109.73088 * 315.52741 * 29 5 4 44 44 H 1.08993 * 109.73292 * 76.16393 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2845 1.0522 0.0000 4 7 3.5191 0.6812 -0.0005 5 6 3.5815 -0.6156 -0.0015 6 7 2.3075 -1.0833 0.0058 7 6 1.9366 -2.4981 0.0041 8 6 3.1550 -3.3252 0.4309 9 1 3.3619 -3.1486 1.4864 10 6 2.8688 -4.7888 0.2140 11 8 1.7988 -5.1369 -0.2387 12 7 3.8020 -5.7108 0.5229 13 6 3.5033 -7.0739 0.4106 14 6 4.0453 -7.9805 1.3130 15 6 3.7466 -9.3235 1.2054 16 6 2.9128 -9.7702 0.1881 17 8 2.6228 -11.0922 0.0794 18 6 1.8990 -11.4739 -0.9920 19 1 1.5083 -10.7314 -1.6721 20 6 1.6561 -12.8195 -1.2207 21 7 2.1324 -13.7240 -0.3925 22 14 0.6525 -13.3483 -2.7049 23 1 1.3253 -12.8891 -3.9465 24 1 0.5371 -14.8287 -2.7223 25 1 -0.7032 -12.7476 -2.6253 26 6 2.3754 -8.8646 -0.7177 27 6 2.6693 -7.5208 -0.6066 28 6 4.3718 -2.9143 -0.4031 29 6 4.8051 -1.4971 -0.0045 30 1 -0.3634 -0.0004 -1.0277 31 1 -0.3634 0.8903 0.5135 32 1 -0.3634 -0.8897 0.5142 33 1 1.6244 -2.7966 -0.9966 34 1 1.1191 -2.6622 0.7063 35 1 4.6806 -5.4300 0.8232 36 1 4.6974 -7.6338 2.1010 37 1 4.1641 -10.0277 1.9098 38 1 1.9627 -14.6655 -0.5527 39 1 1.7269 -9.2119 -1.5083 40 1 2.2512 -6.8165 -1.3106 41 1 4.1101 -2.9306 -1.4611 42 1 5.1904 -3.6102 -0.2195 43 1 5.5301 -1.1177 -0.7244 44 1 5.2491 -1.5137 0.9908 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645627310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:42:31 Heat of formation + Delta-G solvation = 42.287580 kcal Electronic energy + Delta-G solvation = -28473.731181 eV Core-core repulsion = 24393.226653 eV Total energy + Delta-G solvation = -4080.504528 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.64187 -40.65654 -38.95806 -37.42414 -36.47837 -34.65084 -34.08278 -32.33067 -31.91935 -30.89338 -30.31370 -28.16624 -27.70320 -25.66385 -25.05384 -23.70059 -22.53537 -21.90854 -21.46833 -20.49586 -19.79258 -18.29605 -17.87897 -17.48157 -16.97363 -16.53885 -16.40035 -15.70234 -15.24975 -14.71247 -14.68999 -14.57739 -14.42582 -14.23283 -13.90703 -13.70995 -13.66872 -13.48987 -13.02575 -12.98774 -12.74020 -12.67796 -12.54787 -11.91729 -11.86571 -11.74381 -11.66255 -11.61602 -11.55980 -11.08228 -10.86341 -10.62092 -10.51751 -10.44724 -9.94812 -9.84393 -9.30410 -9.27797 -8.79465 -8.32978 -7.07768 -6.52308 -4.10207 1.48439 1.87090 2.02090 2.08682 2.55890 2.56652 2.96890 3.09741 3.10576 3.13199 3.61548 3.83218 3.91024 4.00873 4.03374 4.13795 4.43128 4.48312 4.57066 4.65705 4.73224 4.83684 5.01633 5.02735 5.08042 5.13341 5.15699 5.20941 5.33300 5.43616 5.48200 5.54886 5.61812 5.65289 5.87384 5.97637 6.04528 6.19443 6.51444 6.58942 6.71697 6.86554 6.95369 7.19055 7.33248 7.45075 7.64093 7.92150 8.06778 8.44783 8.93062 9.60931 10.65157 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.022764 B = 0.002006 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.694529 B =13953.989093 C =14723.892155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.181 3.819 3 N -0.301 5.301 4 N -0.291 5.291 5 C 0.171 3.829 6 N -0.469 5.469 7 C 0.123 3.877 8 C -0.121 4.121 9 H 0.112 0.888 10 C 0.516 3.484 11 O -0.522 6.522 12 N -0.651 5.651 13 C 0.025 3.975 14 C -0.089 4.089 15 C -0.179 4.179 16 C 0.148 3.852 17 O -0.174 6.174 18 C -0.392 4.392 19 H 0.093 0.907 20 C 0.040 3.960 21 N -0.860 5.860 22 Si 0.941 3.059 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.222 4.222 27 C -0.061 4.061 28 C -0.120 4.120 29 C -0.031 4.031 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.403 0.597 36 H 0.115 0.885 37 H 0.122 0.878 38 H 0.271 0.729 39 H 0.131 0.869 40 H 0.124 0.876 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.106 0.894 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.036 21.306 1.605 21.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.086 4.086 3 N -0.142 5.142 4 N -0.130 5.130 5 C -0.097 4.097 6 N -0.160 5.160 7 C 0.000 4.000 8 C -0.143 4.143 9 H 0.130 0.870 10 C 0.302 3.698 11 O -0.398 6.398 12 N -0.295 5.295 13 C -0.067 4.067 14 C -0.109 4.109 15 C -0.198 4.198 16 C 0.094 3.906 17 O -0.077 6.077 18 C -0.468 4.468 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.242 4.242 27 C -0.081 4.081 28 C -0.158 4.158 29 C -0.070 4.070 30 H 0.106 0.894 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.238 0.762 36 H 0.133 0.867 37 H 0.140 0.860 38 H 0.081 0.919 39 H 0.148 0.852 40 H 0.142 0.858 41 H 0.101 0.899 42 H 0.112 0.888 43 H 0.124 0.876 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.709 22.048 1.469 22.262 hybrid contribution -0.519 -1.475 -0.517 1.647 sum 2.190 20.573 0.952 20.711 Atomic orbital electron populations 1.20245 0.83593 1.04649 1.04258 1.24696 0.97166 0.82670 1.04112 1.74492 0.96093 1.23662 1.19935 1.74038 1.12363 1.08028 1.18557 1.24697 0.87063 0.92616 1.05313 1.46005 1.06998 1.08490 1.54516 1.21772 0.97596 0.75162 1.05453 1.21614 0.96385 0.92866 1.03444 0.86971 1.20009 0.84316 0.86747 0.78769 1.90752 1.24389 1.81342 1.43344 1.43099 1.15310 1.04755 1.66382 1.17209 1.07820 0.81380 1.00280 1.20346 1.00984 0.92331 0.97268 1.20005 1.03671 0.94851 1.01319 1.19429 0.92348 0.85413 0.93436 1.83973 1.62926 1.17663 1.43092 1.21294 1.30549 0.92467 1.02523 0.89013 1.25301 0.97702 0.94551 0.98918 1.70029 1.42234 1.01548 1.35675 0.85771 0.79615 0.78033 0.79996 1.19438 1.20226 1.19432 1.21104 1.06854 0.92584 1.03653 1.20820 0.96532 0.95054 0.95707 1.21773 0.96774 0.96512 1.00787 1.20218 0.91250 0.90833 1.04696 0.89420 0.88619 0.90231 0.87715 0.87752 0.76231 0.86692 0.85973 0.91869 0.85160 0.85778 0.89945 0.88798 0.87577 0.88297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.29 36.00 0.37 -0.06 16 2 C 0.18 1.86 8.07 -155.45 -1.25 0.60 16 3 N -0.30 -4.04 12.23 32.70 0.40 -3.64 16 4 N -0.29 -3.86 12.21 32.76 0.40 -3.46 16 5 C 0.17 1.70 7.75 -155.31 -1.20 0.50 16 6 N -0.47 -4.34 3.11 -110.86 -0.35 -4.68 16 7 C 0.12 0.94 5.48 -4.01 -0.02 0.92 16 8 C -0.12 -0.82 2.54 -91.54 -0.23 -1.05 16 9 H 0.11 0.60 8.12 -51.93 -0.42 0.18 16 10 C 0.52 5.53 6.99 -10.98 -0.08 5.46 16 11 O -0.52 -7.73 13.26 5.55 0.07 -7.66 16 12 N -0.65 -7.00 5.21 -9.82 -0.05 -7.05 16 13 C 0.03 0.39 6.30 -83.63 -0.53 -0.14 16 14 C -0.09 -1.40 9.96 -39.42 -0.39 -1.79 16 15 C -0.18 -3.48 9.99 -39.42 -0.39 -3.87 16 16 C 0.15 3.42 6.65 -39.09 -0.26 3.16 16 17 O -0.17 -4.78 9.75 0.01 0.00 -4.78 16 18 C -0.39 -10.67 9.48 30.88 0.29 -10.37 16 19 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -24.59 13.67 55.48 0.76 -23.84 16 22 Si 0.94 20.06 29.55 -169.99 -5.02 15.04 16 23 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 24 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 25 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 26 C -0.22 -4.71 9.16 -39.42 -0.36 -5.07 16 27 C -0.06 -1.12 8.69 -39.41 -0.34 -1.46 16 28 C -0.12 -0.62 5.22 -26.42 -0.14 -0.76 16 29 C -0.03 -0.17 6.34 -27.59 -0.17 -0.35 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.10 0.52 8.14 -51.92 -0.42 0.10 16 32 H 0.08 0.38 7.76 -51.93 -0.40 -0.02 16 33 H 0.10 0.86 7.79 -51.93 -0.40 0.46 16 34 H 0.10 0.74 7.85 -51.93 -0.41 0.33 16 35 H 0.40 2.78 8.02 -40.82 -0.33 2.45 16 36 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 37 H 0.12 2.27 8.06 -52.49 -0.42 1.84 16 38 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.13 2.80 5.63 -52.49 -0.30 2.50 16 40 H 0.12 2.22 6.22 -52.48 -0.33 1.89 16 41 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 42 H 0.09 0.31 7.23 -51.93 -0.38 -0.07 16 43 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 367.66 15.07 5.54 5.54 Total: -1.00 -35.52 367.66 -8.39 -43.91 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -5.33 Total: 3.93 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -4.81 Total: -13.31 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 1.16 Total: -42.67 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.07 Total: -12.44 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.52 -8.39 -43.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645627310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.198 kcal (2) G-P(sol) polarization free energy of solvation -35.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds