Wall clock time and date at job start Wed Apr 1 2020 02:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.50706 * 109.46925 * 119.99837 * 2 1 3 5 5 N 1.30272 * 126.28477 * 300.02162 * 4 2 1 6 6 N 1.28662 * 109.38182 * 179.97438 * 5 4 2 7 7 C 1.30275 * 109.38230 * 0.02562 * 6 5 4 8 8 C 1.50696 * 126.28295 * 179.97438 * 7 6 5 9 9 N 1.46899 * 109.47383 * 89.97223 * 8 7 6 10 10 C 1.46902 * 111.00209 * 293.95925 * 9 8 7 11 11 C 1.46902 * 111.00596 * 169.99865 * 9 8 7 12 12 C 1.52997 * 109.47538 * 190.00286 * 11 9 8 13 13 N 1.46496 * 109.47098 * 179.97438 * 12 11 9 14 14 C 1.34773 * 120.00096 * 179.97438 * 13 12 11 15 15 O 1.21289 * 119.99769 * 0.02562 * 14 13 12 16 16 C 1.50701 * 120.00259 * 180.02562 * 14 13 12 17 17 S 1.81001 * 109.46961 * 180.02562 * 16 14 13 18 18 C 1.76204 * 99.99709 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00180 * 359.97438 * 18 17 16 20 20 C 1.38800 * 120.00235 * 179.97438 * 18 17 16 21 21 N 1.31634 * 119.99763 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00247 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47196 * 90.00396 * 22 20 18 24 24 H 1.48499 * 109.47055 * 210.00138 * 22 20 18 25 25 H 1.48497 * 109.47120 * 330.00069 * 22 20 18 26 26 O 1.34360 * 126.27714 * 119.71440 * 4 2 1 27 27 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 28 28 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 29 29 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47312 * 239.99880 * 2 1 3 31 31 H 1.08992 * 109.47280 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46777 * 300.00347 * 3 2 1 33 33 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 34 34 H 1.09003 * 109.47080 * 209.96917 * 8 7 6 35 35 H 1.08996 * 109.47202 * 329.97269 * 8 7 6 36 36 H 1.08995 * 109.47444 * 59.99305 * 10 9 8 37 37 H 1.09001 * 109.47228 * 179.97438 * 10 9 8 38 38 H 1.09004 * 109.46536 * 299.99577 * 10 9 8 39 39 H 1.09004 * 109.46886 * 310.00460 * 11 9 8 40 40 H 1.08997 * 109.46638 * 69.99569 * 11 9 8 41 41 H 1.09004 * 109.47175 * 299.99998 * 12 11 9 42 42 H 1.09000 * 109.47205 * 59.99442 * 12 11 9 43 43 H 0.96998 * 120.00176 * 0.02562 * 13 12 11 44 44 H 1.08995 * 109.47006 * 300.00239 * 16 14 13 45 45 H 1.08991 * 109.47081 * 60.00422 * 16 14 13 46 46 H 0.97000 * 119.99949 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7939 -0.3740 2.4663 6 7 2.3803 -1.2039 3.2555 7 6 3.0131 -2.0978 2.5501 8 6 3.8261 -3.2468 3.0885 9 7 2.9596 -4.4200 3.2637 10 6 1.9557 -4.1818 4.3094 11 6 3.7525 -5.6209 3.5589 12 6 2.8528 -6.8564 3.4881 13 7 3.6438 -8.0539 3.7819 14 6 3.0568 -9.2671 3.7775 15 8 1.8737 -9.3674 3.5298 16 6 3.8703 -10.4990 4.0803 17 16 2.8059 -11.9605 3.9964 18 6 3.9805 -13.2168 4.3797 19 1 5.0090 -12.9525 4.5767 20 6 3.5841 -14.5461 4.4286 21 7 2.3306 -14.8683 4.1880 22 14 4.8294 -15.8779 4.8342 23 1 4.8637 -16.0927 6.3032 24 1 4.4406 -17.1416 4.1582 25 1 6.1739 -15.4582 4.3638 26 8 2.8035 -1.8104 1.2544 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 4.6251 -3.4868 2.3870 35 1 4.2579 -2.9674 4.0495 36 1 1.3369 -3.3286 4.0315 37 1 1.3274 -5.0658 4.4181 38 1 2.4578 -3.9740 5.2543 39 1 4.5562 -5.7143 2.8284 40 1 4.1784 -5.5382 4.5588 41 1 2.0492 -6.7630 4.2186 42 1 2.4270 -6.9389 2.4881 43 1 4.5899 -7.9737 3.9803 44 1 4.6737 -10.5925 3.3496 45 1 4.2963 -10.4163 5.0801 46 1 2.0535 -15.7972 4.2224 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663146381.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:59 Heat of formation + Delta-G solvation = 1.243594 kcal Electronic energy + Delta-G solvation = -25974.255404 eV Core-core repulsion = 22027.415026 eV Total energy + Delta-G solvation = -3946.840378 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.151 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.61343 -39.36741 -38.24567 -36.58388 -36.38523 -34.61974 -32.43625 -31.86289 -30.13366 -28.29984 -28.14322 -27.82486 -25.55690 -25.12925 -24.63302 -22.59905 -21.55166 -21.34163 -20.41150 -17.92041 -17.80329 -17.63728 -16.53218 -16.44355 -16.27555 -15.91672 -15.57828 -15.08905 -15.05297 -14.82799 -14.80315 -14.03131 -13.87567 -13.76087 -13.61038 -13.14092 -12.89083 -12.77111 -12.67660 -12.56619 -12.49869 -12.33571 -12.18668 -12.01778 -11.92653 -11.88044 -11.82532 -11.38006 -11.18409 -11.07016 -11.03266 -10.77253 -9.96709 -9.82714 -9.45057 -9.07910 -9.02238 -8.92179 -8.24586 -6.50995 -6.22400 -3.93167 0.71827 1.77592 1.96742 2.87866 3.07630 3.19354 3.21774 3.28325 3.32163 3.47846 3.82374 3.91858 4.14495 4.19594 4.34474 4.43177 4.47598 4.51493 4.67384 4.73903 4.93031 5.00564 5.02620 5.03462 5.10632 5.12790 5.14584 5.17835 5.18874 5.22842 5.25743 5.34391 5.53217 5.59090 5.64384 5.67272 5.72106 5.85435 5.88027 6.11942 6.29796 6.33410 6.58749 7.58623 7.65550 7.92400 8.34315 8.58359 9.22884 10.85032 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.033401 B = 0.001432 C = 0.001412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.088718 B =19553.425467 C =19832.060387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.003 3.997 3 C -0.145 4.145 4 C 0.169 3.831 5 N -0.284 5.284 6 N -0.281 5.281 7 C 0.173 3.827 8 C 0.149 3.851 9 N -0.537 5.537 10 C 0.014 3.986 11 C 0.048 3.952 12 C 0.124 3.876 13 N -0.740 5.740 14 C 0.533 3.467 15 O -0.515 6.515 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 O -0.216 6.216 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.038 0.962 39 H 0.087 0.913 40 H 0.050 0.950 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.398 0.602 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.218 32.507 -6.801 33.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.017 4.017 3 C -0.203 4.203 4 C -0.043 4.043 5 N -0.131 5.131 6 N -0.129 5.129 7 C -0.038 4.038 8 C 0.020 3.980 9 N -0.263 5.263 10 C -0.134 4.134 11 C -0.080 4.080 12 C -0.001 4.001 13 N -0.395 5.395 14 C 0.319 3.681 15 O -0.389 6.389 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 O -0.094 6.094 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.128 0.872 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.057 0.943 39 H 0.105 0.895 40 H 0.068 0.932 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.231 0.769 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.384 32.754 -6.655 33.451 hybrid contribution 3.484 -1.232 0.430 3.720 sum 4.868 31.521 -6.225 32.497 Atomic orbital electron populations 1.21883 0.91545 1.03249 1.03741 1.19782 0.97182 0.95339 0.89404 1.21875 1.01553 0.93101 1.03786 1.28111 0.92343 0.85429 0.98377 1.74340 1.19094 1.21179 0.98442 1.74420 1.09137 1.02316 1.27026 1.27694 0.99782 0.99183 0.77167 1.20445 0.92043 0.84382 1.01107 1.61748 1.15570 1.01817 1.47118 1.22620 0.95433 1.03304 0.92058 1.22279 0.95960 0.88811 1.00958 1.21172 0.93787 0.82558 1.02551 1.45893 1.13084 1.06058 1.74463 1.20302 0.88112 0.83700 0.76025 1.90716 1.15746 1.85998 1.46453 1.23525 1.03863 0.98451 1.04521 1.85423 1.12834 0.93048 1.92054 1.22869 0.96987 0.93224 1.55370 0.90919 1.24991 0.95896 0.97954 0.94711 1.70020 1.15576 1.18811 1.45853 0.86166 0.80571 0.80170 0.78577 1.20271 1.20741 1.19705 1.84810 1.54437 1.39181 1.30950 0.91010 0.90421 0.91904 0.87983 0.92141 0.90430 0.91004 0.87152 0.89384 0.90983 0.89967 0.94326 0.89473 0.93200 0.91384 0.90596 0.76887 0.89163 0.89199 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.18 37.16 0.34 -0.35 16 2 C 0.00 0.02 3.39 -91.77 -0.31 -0.29 16 3 C -0.15 -0.59 9.18 37.16 0.34 -0.25 16 4 C 0.17 1.53 6.99 -12.94 -0.09 1.44 16 5 N -0.28 -3.19 12.22 32.55 0.40 -2.79 16 6 N -0.28 -3.23 11.51 32.55 0.37 -2.85 16 7 C 0.17 1.66 7.10 -12.94 -0.09 1.57 16 8 C 0.15 1.01 5.59 -4.98 -0.03 0.98 16 9 N -0.54 -4.42 4.75 -244.37 -1.16 -5.58 16 10 C 0.01 0.12 9.17 60.07 0.55 0.67 16 11 C 0.05 0.35 5.07 -3.82 -0.02 0.33 16 12 C 0.12 1.38 5.60 -4.05 -0.02 1.35 16 13 N -0.74 -9.24 5.56 -60.30 -0.33 -9.58 16 14 C 0.53 9.73 7.85 -10.99 -0.09 9.65 16 15 O -0.52 -11.68 15.86 5.55 0.09 -11.60 16 16 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 17 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 18 C -0.54 -15.19 9.50 30.94 0.29 -14.90 16 19 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.09 13.22 55.49 0.73 -25.36 16 22 Si 0.92 21.28 29.55 -169.99 -5.02 16.25 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 O -0.22 -2.12 10.87 5.38 0.06 -2.06 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.11 0.52 7.93 -51.93 -0.41 0.10 16 35 H 0.09 0.48 8.12 -51.93 -0.42 0.05 16 36 H 0.07 0.73 6.74 -51.93 -0.35 0.38 16 37 H 0.08 0.76 6.30 -51.93 -0.33 0.43 16 38 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.09 0.51 7.93 -51.93 -0.41 0.10 16 40 H 0.05 0.31 8.12 -51.93 -0.42 -0.11 16 41 H 0.07 0.83 6.47 -51.93 -0.34 0.50 16 42 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.40 3.61 8.47 -40.82 -0.35 3.27 16 44 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 45 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 46 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 401.47 15.07 6.05 6.05 Total: -1.00 -36.90 401.47 -7.25 -44.15 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -7.22 Total: -2.19 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: 1.00 Total: -0.60 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.01 Total: -46.16 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.15 Total: -13.66 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.90 -7.25 -44.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663146381.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.391 kcal (2) G-P(sol) polarization free energy of solvation -36.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds