Wall clock time and date at job start Wed Apr 1 2020 02:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.50706 * 109.46925 * 119.99837 * 2 1 3 5 5 N 1.30272 * 126.28477 * 300.02162 * 4 2 1 6 6 N 1.28662 * 109.38182 * 179.97438 * 5 4 2 7 7 C 1.30275 * 109.38230 * 0.02562 * 6 5 4 8 8 C 1.50696 * 126.28295 * 179.97438 * 7 6 5 9 9 N 1.46899 * 109.47383 * 89.97223 * 8 7 6 10 10 C 1.46902 * 111.00209 * 293.95925 * 9 8 7 11 11 C 1.46902 * 111.00596 * 169.99865 * 9 8 7 12 12 C 1.52997 * 109.47538 * 190.00286 * 11 9 8 13 13 N 1.46496 * 109.47098 * 179.97438 * 12 11 9 14 14 C 1.34773 * 120.00096 * 179.97438 * 13 12 11 15 15 O 1.21289 * 119.99769 * 0.02562 * 14 13 12 16 16 C 1.50701 * 120.00259 * 180.02562 * 14 13 12 17 17 S 1.81001 * 109.46961 * 180.02562 * 16 14 13 18 18 C 1.76204 * 99.99709 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00180 * 359.97438 * 18 17 16 20 20 C 1.38800 * 120.00235 * 179.97438 * 18 17 16 21 21 N 1.31634 * 119.99763 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00247 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47196 * 90.00396 * 22 20 18 24 24 H 1.48499 * 109.47055 * 210.00138 * 22 20 18 25 25 H 1.48497 * 109.47120 * 330.00069 * 22 20 18 26 26 O 1.34360 * 126.27714 * 119.71440 * 4 2 1 27 27 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 28 28 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 29 29 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47312 * 239.99880 * 2 1 3 31 31 H 1.08992 * 109.47280 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46777 * 300.00347 * 3 2 1 33 33 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 34 34 H 1.09003 * 109.47080 * 209.96917 * 8 7 6 35 35 H 1.08996 * 109.47202 * 329.97269 * 8 7 6 36 36 H 1.08995 * 109.47444 * 59.99305 * 10 9 8 37 37 H 1.09001 * 109.47228 * 179.97438 * 10 9 8 38 38 H 1.09004 * 109.46536 * 299.99577 * 10 9 8 39 39 H 1.09004 * 109.46886 * 310.00460 * 11 9 8 40 40 H 1.08997 * 109.46638 * 69.99569 * 11 9 8 41 41 H 1.09004 * 109.47175 * 299.99998 * 12 11 9 42 42 H 1.09000 * 109.47205 * 59.99442 * 12 11 9 43 43 H 0.96998 * 120.00176 * 0.02562 * 13 12 11 44 44 H 1.08995 * 109.47006 * 300.00239 * 16 14 13 45 45 H 1.08991 * 109.47081 * 60.00422 * 16 14 13 46 46 H 0.97000 * 119.99949 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7939 -0.3740 2.4663 6 7 2.3803 -1.2039 3.2555 7 6 3.0131 -2.0978 2.5501 8 6 3.8261 -3.2468 3.0885 9 7 2.9596 -4.4200 3.2637 10 6 1.9557 -4.1818 4.3094 11 6 3.7525 -5.6209 3.5589 12 6 2.8528 -6.8564 3.4881 13 7 3.6438 -8.0539 3.7819 14 6 3.0568 -9.2671 3.7775 15 8 1.8737 -9.3674 3.5298 16 6 3.8703 -10.4990 4.0803 17 16 2.8059 -11.9605 3.9964 18 6 3.9805 -13.2168 4.3797 19 1 5.0090 -12.9525 4.5767 20 6 3.5841 -14.5461 4.4286 21 7 2.3306 -14.8683 4.1880 22 14 4.8294 -15.8779 4.8342 23 1 4.8637 -16.0927 6.3032 24 1 4.4406 -17.1416 4.1582 25 1 6.1739 -15.4582 4.3638 26 8 2.8035 -1.8104 1.2544 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 4.6251 -3.4868 2.3870 35 1 4.2579 -2.9674 4.0495 36 1 1.3369 -3.3286 4.0315 37 1 1.3274 -5.0658 4.4181 38 1 2.4578 -3.9740 5.2543 39 1 4.5562 -5.7143 2.8284 40 1 4.1784 -5.5382 4.5588 41 1 2.0492 -6.7630 4.2186 42 1 2.4270 -6.9389 2.4881 43 1 4.5899 -7.9737 3.9803 44 1 4.6737 -10.5925 3.3496 45 1 4.2963 -10.4163 5.0801 46 1 2.0535 -15.7972 4.2224 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663146381.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:58 Heat of formation + Delta-G solvation = -30.636581 kcal Electronic energy + Delta-G solvation = -25975.637832 eV Core-core repulsion = 22027.415026 eV Total energy + Delta-G solvation = -3948.222806 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.151 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.32587 -40.66726 -39.03267 -37.28362 -36.89275 -35.77804 -34.57237 -32.66959 -31.35973 -29.29636 -28.85589 -28.17188 -27.65172 -25.95096 -25.32319 -23.34810 -22.27229 -21.88090 -21.73689 -19.82606 -18.57120 -18.32121 -17.82549 -17.48239 -17.03667 -16.86847 -16.64782 -16.38560 -16.26116 -16.05362 -15.44966 -15.28422 -14.97711 -14.68118 -14.36171 -14.26870 -14.16043 -13.59677 -13.56048 -13.25873 -13.15392 -13.12156 -13.09426 -12.98870 -12.88044 -12.72849 -12.66533 -12.56594 -12.34992 -12.32000 -12.21359 -11.77309 -11.71925 -11.13200 -11.00405 -10.66074 -10.25819 -10.11999 -9.61690 -8.65765 -8.33572 -6.11767 0.04008 1.14045 1.25076 1.28838 1.43593 1.48338 1.58337 1.62042 2.15954 2.28774 2.68559 2.95839 3.00816 3.33574 3.35309 3.64726 3.76267 3.95457 3.96160 4.02919 4.04111 4.05919 4.17481 4.31850 4.33398 4.35104 4.45979 4.51399 4.53496 4.54645 4.63120 4.72803 4.81231 4.82913 4.84395 4.90749 5.00060 5.00574 5.24583 5.29423 5.38155 5.43124 5.68257 5.76824 6.20947 6.51811 7.07854 7.19917 7.26130 8.75665 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.033401 B = 0.001432 C = 0.001412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.088718 B =19553.425467 C =19832.060387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.001 3.999 3 C -0.141 4.141 4 C 0.172 3.828 5 N -0.317 5.317 6 N -0.310 5.310 7 C 0.173 3.827 8 C 0.151 3.849 9 N -0.550 5.550 10 C 0.019 3.981 11 C 0.060 3.940 12 C 0.124 3.876 13 N -0.709 5.709 14 C 0.533 3.467 15 O -0.568 6.568 16 C -0.128 4.128 17 S -0.156 6.156 18 C -0.546 4.546 19 H 0.085 0.915 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 0.999 3.001 23 H -0.268 1.268 24 H -0.279 1.279 25 H -0.257 1.257 26 O -0.224 6.224 27 H 0.057 0.943 28 H 0.103 0.897 29 H 0.051 0.949 30 H 0.121 0.879 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.057 0.943 34 H 0.138 0.862 35 H 0.106 0.894 36 H 0.053 0.947 37 H 0.071 0.929 38 H 0.050 0.950 39 H 0.113 0.887 40 H 0.072 0.928 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.420 0.580 44 H 0.113 0.887 45 H 0.112 0.888 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.341 33.455 -7.192 34.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.019 4.019 3 C -0.198 4.198 4 C -0.039 4.039 5 N -0.162 5.162 6 N -0.157 5.157 7 C -0.039 4.039 8 C 0.022 3.978 9 N -0.276 5.276 10 C -0.129 4.129 11 C -0.068 4.068 12 C 0.000 4.000 13 N -0.364 5.364 14 C 0.319 3.681 15 O -0.446 6.446 16 C -0.279 4.279 17 S 0.071 5.929 18 C -0.694 4.694 19 H 0.103 0.897 20 C -0.191 4.191 21 N -0.549 5.549 22 Si 0.821 3.179 23 H -0.193 1.193 24 H -0.204 1.204 25 H -0.181 1.181 26 O -0.103 6.103 27 H 0.076 0.924 28 H 0.122 0.878 29 H 0.070 0.930 30 H 0.139 0.861 31 H 0.077 0.923 32 H 0.121 0.879 33 H 0.076 0.924 34 H 0.156 0.844 35 H 0.124 0.876 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.131 0.869 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.257 0.743 44 H 0.131 0.869 45 H 0.131 0.869 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.557 33.765 -7.026 34.788 hybrid contribution 2.497 -1.372 0.513 2.895 sum 7.054 32.393 -6.513 33.786 Atomic orbital electron populations 1.21882 0.91161 1.02706 1.04361 1.20095 0.97399 0.95892 0.88479 1.21867 1.01437 0.92197 1.04334 1.28903 0.91203 0.84903 0.98923 1.74274 1.20361 1.22146 0.99451 1.74344 1.10180 1.03262 1.27931 1.28288 0.99243 0.99355 0.77007 1.20690 0.91653 0.82824 1.02590 1.61632 1.16227 1.02741 1.47049 1.22501 0.95581 1.01969 0.92827 1.22189 0.95129 0.86321 1.03113 1.21228 0.94350 0.83409 1.01031 1.45541 1.14164 1.04627 1.72064 1.20086 0.87227 0.84893 0.75879 1.90708 1.17889 1.86809 1.49239 1.23360 1.02639 0.95340 1.06576 1.85636 1.17042 0.97763 1.92476 1.23216 0.97290 0.93675 1.55170 0.89738 1.26131 0.98033 1.00738 0.94242 1.70191 1.18040 1.19437 1.47200 0.84949 0.78020 0.76411 0.78570 1.19349 1.20425 1.18066 1.84826 1.54761 1.39525 1.31200 0.92372 0.87787 0.93001 0.86082 0.92281 0.87908 0.92383 0.84426 0.87612 0.92829 0.91027 0.93196 0.86917 0.91030 0.92711 0.92467 0.74282 0.86907 0.86946 0.92040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.18 71.98 0.66 -0.60 16 2 C 0.00 0.01 3.39 -11.54 -0.04 -0.03 16 3 C -0.14 -0.97 9.18 71.98 0.66 -0.31 16 4 C 0.17 3.09 6.99 88.34 0.62 3.71 16 5 N -0.32 -7.29 12.22 -165.50 -2.02 -9.32 16 6 N -0.31 -7.18 11.51 -165.50 -1.90 -9.08 16 7 C 0.17 3.18 7.10 88.34 0.63 3.81 16 8 C 0.15 1.65 5.59 85.56 0.48 2.13 16 9 N -0.55 -7.95 4.75 -927.05 -4.41 -12.36 16 10 C 0.02 0.33 9.17 127.69 1.17 1.50 16 11 C 0.06 0.67 5.07 86.30 0.44 1.11 16 12 C 0.12 2.56 5.60 86.38 0.48 3.05 16 13 N -0.71 -15.99 5.56 -463.06 -2.57 -18.56 16 14 C 0.53 19.01 7.85 87.66 0.69 19.70 16 15 O -0.57 -26.32 15.86 -3.06 -0.05 -26.37 16 16 C -0.13 -4.87 6.16 71.24 0.44 -4.43 16 17 S -0.16 -8.62 20.57 -56.49 -1.16 -9.78 16 18 C -0.55 -30.83 9.50 67.95 0.65 -30.18 16 19 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 20 C 0.01 0.75 5.49 84.86 0.47 1.21 16 21 N -0.91 -55.96 13.22 21.65 0.29 -55.68 16 22 Si 1.00 43.16 29.55 68.60 2.03 45.18 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 24 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 26 O -0.22 -4.25 10.87 -3.68 -0.04 -4.29 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.14 0.75 7.93 -2.39 -0.02 0.74 16 35 H 0.11 0.81 8.12 -2.39 -0.02 0.80 16 36 H 0.05 1.11 6.74 -2.39 -0.02 1.09 16 37 H 0.07 1.33 6.30 -2.39 -0.02 1.32 16 38 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.11 0.77 7.93 -2.38 -0.02 0.75 16 40 H 0.07 0.57 8.12 -2.39 -0.02 0.55 16 41 H 0.05 1.32 6.47 -2.38 -0.02 1.30 16 42 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.42 5.91 8.47 -92.71 -0.79 5.13 16 44 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 45 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16 46 H 0.27 15.42 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -84.75 401.47 -2.30 -87.05 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 0.20 Total: 12.54 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 7.34 Total: 0.67 kcal Atomic # 7 Polarization: -94.38 SS G_CDS: -10.62 Total: -105.00 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -0.09 Total: -30.66 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.78 kcal Total: -84.75 -2.30 -87.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663146381.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.417 kcal (2) G-P(sol) polarization free energy of solvation -84.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds