Wall clock time and date at job start Wed Apr 1 2020 01:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30272 * 126.28137 * 2 1 4 4 N 1.28674 * 109.37817 * 179.82904 * 3 2 1 5 5 C 1.30271 * 109.38072 * 0.43967 * 4 3 2 6 6 C 1.50702 * 126.28041 * 179.73255 * 5 4 3 7 7 H 1.09003 * 109.46999 * 165.00432 * 6 5 4 8 8 C 1.52994 * 109.47032 * 285.00019 * 6 5 4 9 9 N 1.46897 * 109.46948 * 45.00288 * 6 5 4 10 10 C 1.46908 * 110.99788 * 154.99903 * 9 6 5 11 11 C 1.52994 * 109.46924 * 179.97438 * 10 9 6 12 12 H 1.09000 * 109.47400 * 65.00169 * 11 10 9 13 13 C 1.53000 * 109.46952 * 185.00099 * 11 10 9 14 14 N 1.46500 * 109.47351 * 305.00068 * 11 10 9 15 15 C 1.46502 * 119.99956 * 300.00067 * 14 11 10 16 16 C 1.34776 * 120.00137 * 120.00201 * 14 11 10 17 17 O 1.21280 * 119.99640 * 359.97438 * 16 14 11 18 18 C 1.50697 * 120.00028 * 179.97438 * 16 14 11 19 19 S 1.80994 * 109.47198 * 179.97438 * 18 16 14 20 20 C 1.76200 * 100.00104 * 180.02562 * 19 18 16 21 21 H 1.07999 * 120.00317 * 359.97438 * 20 19 18 22 22 C 1.38799 * 120.00209 * 180.02562 * 20 19 18 23 23 N 1.31634 * 119.99899 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00364 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47390 * 89.99395 * 24 22 20 26 26 H 1.48504 * 109.47275 * 209.99842 * 24 22 20 27 27 H 1.48504 * 109.46734 * 329.99392 * 24 22 20 28 28 O 1.34363 * 126.28113 * 180.31067 * 2 1 3 29 29 H 1.09002 * 109.47152 * 269.69039 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.69140 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.69120 * 1 2 3 32 32 H 1.09004 * 109.47620 * 300.00076 * 8 6 5 33 33 H 1.08997 * 109.47517 * 60.00080 * 8 6 5 34 34 H 1.09001 * 109.47396 * 179.97438 * 8 6 5 35 35 H 1.00894 * 110.99819 * 278.95022 * 9 6 5 36 36 H 1.09004 * 109.47130 * 299.99824 * 10 9 6 37 37 H 1.09004 * 109.47039 * 59.99987 * 10 9 6 38 38 H 1.09003 * 109.47491 * 59.99967 * 13 11 10 39 39 H 1.09001 * 109.47560 * 180.02562 * 13 11 10 40 40 H 1.09004 * 109.47337 * 299.99894 * 13 11 10 41 41 H 1.09001 * 109.46953 * 89.99854 * 15 14 11 42 42 H 1.08997 * 109.47214 * 210.00133 * 15 14 11 43 43 H 1.09006 * 109.46994 * 330.00038 * 15 14 11 44 44 H 1.09004 * 109.47312 * 300.00234 * 18 16 14 45 45 H 1.09004 * 109.46979 * 60.00034 * 18 16 14 46 46 H 0.96997 * 120.00443 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5091 0.6760 0.0036 5 6 3.5654 -0.6254 -0.0034 6 6 4.8177 -1.4638 -0.0079 7 1 4.5673 -2.4923 0.2525 8 6 5.4491 -1.4298 -1.4011 9 7 5.7694 -0.9277 0.9743 10 6 6.6932 -1.9722 1.4365 11 6 7.6671 -1.3771 2.4554 12 1 7.1178 -1.0645 3.3435 13 6 8.7064 -2.4309 2.8433 14 7 8.3429 -0.2185 1.8662 15 6 9.1521 -0.3800 0.6556 16 6 8.2202 0.9958 2.4377 17 8 7.5500 1.1295 3.4396 18 6 8.9158 2.1875 1.8319 19 16 8.5596 3.6611 2.8206 20 6 9.4691 4.8662 1.9123 21 1 10.0202 4.5751 1.0303 22 6 9.4781 6.1896 2.3308 23 7 8.8068 6.5444 3.4061 24 14 10.4428 7.4671 1.3683 25 1 9.5709 8.0628 0.3241 26 1 10.9098 8.5332 2.2906 27 1 11.6149 6.8209 0.7248 28 8 2.3021 -1.0831 -0.0059 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5186 31 1 -0.3633 0.8928 -0.5090 32 1 4.7429 -1.8276 -2.1300 33 1 5.6994 -0.4014 -1.6616 34 1 6.3551 -2.0358 -1.4043 35 1 6.2740 -0.1401 0.5962 36 1 6.1265 -2.7782 1.9028 37 1 7.2519 -2.3651 0.5870 38 1 9.2557 -2.7436 1.9553 39 1 9.4000 -2.0072 3.5696 40 1 8.2036 -3.2929 3.2818 41 1 8.5247 -0.2314 -0.2232 42 1 9.9570 0.3549 0.6560 43 1 9.5766 -1.3838 0.6335 44 1 9.9914 2.0112 1.8163 45 1 8.5576 2.3383 0.8135 46 1 8.8127 7.4693 3.6984 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753679846.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:12 Heat of formation + Delta-G solvation = 9.731167 kcal Electronic energy + Delta-G solvation = -27822.770569 eV Core-core repulsion = 23876.298240 eV Total energy + Delta-G solvation = -3946.472329 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.151 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.27364 -39.82043 -37.68966 -36.21031 -35.73934 -33.15534 -32.35801 -32.29820 -30.18273 -28.63090 -28.15170 -26.82949 -25.63997 -25.40596 -24.39823 -22.62515 -21.58201 -21.47679 -18.99600 -17.70982 -17.60468 -17.35889 -16.83633 -16.28817 -15.79014 -15.51344 -15.23078 -14.88434 -14.74186 -14.58350 -14.04158 -13.77239 -13.53014 -13.29545 -13.27447 -13.13646 -13.03845 -12.76012 -12.65325 -12.42654 -12.39365 -12.26271 -12.20030 -11.99641 -11.86557 -11.80148 -11.52210 -11.05023 -11.00621 -10.94863 -10.90083 -10.69929 -9.73796 -9.58781 -9.25016 -8.99721 -8.82265 -8.48821 -8.13471 -6.41068 -6.14428 -3.84074 1.05075 2.01358 2.38157 2.96764 3.15213 3.27336 3.30246 3.34685 3.60939 3.66788 3.83180 4.26864 4.27652 4.40714 4.51422 4.69083 4.86348 4.89250 4.96237 5.00907 5.04935 5.07856 5.12724 5.17181 5.20407 5.22320 5.32037 5.33894 5.36372 5.40584 5.50561 5.51939 5.60426 5.62987 5.70290 5.71100 5.94067 5.99709 6.09375 6.19823 6.57082 6.73786 7.05994 7.58274 7.66144 8.29898 8.41884 8.65643 9.30617 10.92994 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.009361 B = 0.003086 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2990.297246 B = 9069.848239 C =11040.589445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.151 3.849 3 N -0.283 5.283 4 N -0.262 5.262 5 C 0.172 3.828 6 C 0.186 3.814 7 H 0.108 0.892 8 C -0.180 4.180 9 N -0.672 5.672 10 C 0.055 3.945 11 C 0.137 3.863 12 H 0.111 0.889 13 C -0.159 4.159 14 N -0.622 5.622 15 C 0.077 3.923 16 C 0.536 3.464 17 O -0.507 6.507 18 C -0.150 4.150 19 S -0.059 6.059 20 C -0.534 4.534 21 H 0.071 0.929 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.283 1.283 27 H -0.273 1.273 28 O -0.230 6.230 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.362 0.638 36 H 0.084 0.916 37 H 0.038 0.962 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.048 0.952 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.925 -24.255 -10.508 27.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.059 4.059 3 N -0.131 5.131 4 N -0.108 5.108 5 C -0.040 4.040 6 C 0.073 3.927 7 H 0.125 0.875 8 C -0.239 4.239 9 N -0.307 5.307 10 C -0.075 4.075 11 C 0.033 3.967 12 H 0.129 0.871 13 C -0.218 4.218 14 N -0.360 5.360 15 C -0.067 4.067 16 C 0.324 3.676 17 O -0.380 6.380 18 C -0.300 4.300 19 S 0.168 5.832 20 C -0.682 4.682 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.744 3.256 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.198 1.198 28 O -0.110 6.110 29 H 0.116 0.884 30 H 0.109 0.891 31 H 0.124 0.876 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.184 0.816 36 H 0.102 0.898 37 H 0.056 0.944 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.021 -22.720 -8.344 26.197 hybrid contribution 1.586 -0.589 -2.626 3.124 sum -8.435 -23.310 -10.970 27.108 Atomic orbital electron populations 1.20321 0.80310 1.05461 1.05222 1.28026 0.97780 0.79775 1.00356 1.74493 0.96200 1.25527 1.16864 1.74440 1.11708 1.09030 1.15584 1.27855 0.84748 0.91765 0.99679 1.19664 0.84806 0.95477 0.92723 0.87452 1.22514 1.01634 1.04127 0.95622 1.60008 1.20545 1.10134 1.39969 1.22399 0.93513 0.93813 0.97747 1.21040 0.92455 0.85760 0.97433 0.87122 1.22103 0.99317 0.98514 1.01837 1.47918 1.51441 1.07933 1.28664 1.21740 0.95540 1.02710 0.86679 1.20307 0.80452 0.83089 0.83788 1.90701 1.38905 1.83962 1.24396 1.23548 1.02526 0.99088 1.04844 1.85442 1.66917 0.95194 1.35676 1.22852 1.35477 0.95004 1.14877 0.91041 1.24982 0.95638 0.97713 0.95252 1.70022 1.39467 1.18266 1.22493 0.86189 0.79727 0.80288 0.79403 1.20268 1.20810 1.19757 1.84720 1.17514 1.38557 1.70171 0.88351 0.89145 0.87575 0.91329 0.90787 0.90508 0.81592 0.89786 0.94410 0.92407 0.91616 0.91478 0.93326 0.90485 0.91313 0.89464 0.89368 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.33 10.51 36.01 0.38 0.04 16 2 C 0.15 1.80 8.48 -12.94 -0.11 1.69 16 3 N -0.28 -4.53 12.22 32.55 0.40 -4.14 16 4 N -0.26 -4.40 12.22 32.55 0.40 -4.00 16 5 C 0.17 2.28 7.32 -12.94 -0.09 2.18 16 6 C 0.19 1.80 3.13 -68.87 -0.22 1.59 16 7 H 0.11 0.79 7.80 -51.93 -0.40 0.39 16 8 C -0.18 -1.36 9.14 37.15 0.34 -1.02 16 9 N -0.67 -7.90 6.22 -107.95 -0.67 -8.57 16 10 C 0.05 0.49 4.83 -3.82 -0.02 0.47 16 11 C 0.14 1.56 2.95 -67.93 -0.20 1.36 16 12 H 0.11 1.64 6.90 -51.93 -0.36 1.28 16 13 C -0.16 -1.36 9.17 37.16 0.34 -1.02 16 14 N -0.62 -8.31 1.83 -173.94 -0.32 -8.63 16 15 C 0.08 0.74 9.38 59.85 0.56 1.31 16 16 C 0.54 10.23 7.69 -10.99 -0.08 10.14 16 17 O -0.51 -11.85 15.19 5.56 0.08 -11.77 16 18 C -0.15 -3.10 4.71 36.00 0.17 -2.93 16 19 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 20 C -0.53 -15.54 9.50 30.94 0.29 -15.25 16 21 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 22 C 0.07 2.14 5.49 -17.43 -0.10 2.05 16 23 N -0.87 -26.80 13.22 55.49 0.73 -26.07 16 24 Si 0.92 21.90 29.55 -169.99 -5.02 16.87 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 28 O -0.23 -2.79 10.87 5.38 0.06 -2.73 16 29 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.69 8.13 -51.93 -0.42 0.26 16 34 H 0.08 0.43 7.45 -51.93 -0.39 0.05 16 35 H 0.36 4.88 7.59 -39.30 -0.30 4.58 16 36 H 0.08 0.63 8.06 -51.93 -0.42 0.21 16 37 H 0.04 0.26 7.13 -51.93 -0.37 -0.11 16 38 H 0.06 0.40 6.66 -51.93 -0.35 0.05 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.05 0.42 8.13 -51.93 -0.42 0.00 16 42 H 0.08 0.79 6.44 -51.93 -0.33 0.46 16 43 H 0.07 0.49 6.43 -51.93 -0.33 0.15 16 44 H 0.09 1.66 7.40 -51.91 -0.38 1.28 16 45 H 0.09 1.72 8.11 -51.91 -0.42 1.30 16 46 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 396.73 15.07 5.98 5.98 Total: -1.00 -39.04 396.73 -6.29 -45.33 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -6.98 Total: 0.98 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 1.26 Total: 0.61 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: 0.54 Total: -51.40 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: 0.14 Total: -14.50 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -39.04 -6.29 -45.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753679846.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.060 kcal (2) G-P(sol) polarization free energy of solvation -39.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds