Wall clock time and date at job start Wed Apr 1 2020 01:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30275 * 126.27998 * 2 1 4 4 N 1.28664 * 109.37935 * 179.97438 * 3 2 1 5 5 C 1.30270 * 109.38336 * 0.02562 * 4 3 2 6 6 C 1.50706 * 126.28602 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.47268 * 195.02201 * 6 5 4 8 8 C 1.53000 * 109.46606 * 75.02119 * 6 5 4 9 9 N 1.46901 * 109.47130 * 315.02670 * 6 5 4 10 10 C 1.46894 * 110.99870 * 204.99644 * 9 6 5 11 11 C 1.52997 * 109.46972 * 180.02562 * 10 9 6 12 12 H 1.09001 * 109.47289 * 295.00160 * 11 10 9 13 13 C 1.53006 * 109.47127 * 175.00207 * 11 10 9 14 14 N 1.46500 * 109.47473 * 54.99834 * 11 10 9 15 15 C 1.46502 * 119.99711 * 60.00297 * 14 11 10 16 16 C 1.34769 * 120.00163 * 240.00131 * 14 11 10 17 17 O 1.21279 * 120.00303 * 0.02562 * 16 14 11 18 18 C 1.50701 * 119.99833 * 179.97438 * 16 14 11 19 19 S 1.81011 * 109.47088 * 180.02562 * 18 16 14 20 20 C 1.76199 * 100.00086 * 180.02562 * 19 18 16 21 21 H 1.08004 * 120.00021 * 359.97438 * 20 19 18 22 22 C 1.38791 * 119.99873 * 180.02562 * 20 19 18 23 23 N 1.31630 * 120.00045 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99791 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47128 * 60.00147 * 24 22 20 26 26 H 1.48500 * 109.47122 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47026 * 299.99711 * 24 22 20 28 28 O 1.34360 * 107.43494 * 0.23921 * 5 4 3 29 29 H 1.09004 * 109.46996 * 89.97749 * 1 2 3 30 30 H 1.08999 * 109.47328 * 209.97296 * 1 2 3 31 31 H 1.08996 * 109.47659 * 329.97510 * 1 2 3 32 32 H 1.09005 * 109.47238 * 60.00412 * 8 6 5 33 33 H 1.09002 * 109.47019 * 180.02562 * 8 6 5 34 34 H 1.08993 * 109.47950 * 300.00416 * 8 6 5 35 35 H 1.00900 * 110.99552 * 81.04321 * 9 6 5 36 36 H 1.08993 * 109.47095 * 59.99880 * 10 9 6 37 37 H 1.09002 * 109.47061 * 299.99977 * 10 9 6 38 38 H 1.09001 * 109.47002 * 299.99574 * 13 11 10 39 39 H 1.08993 * 109.46955 * 60.00011 * 13 11 10 40 40 H 1.09000 * 109.47050 * 179.97438 * 13 11 10 41 41 H 1.08993 * 109.47565 * 90.00263 * 15 14 11 42 42 H 1.09007 * 109.46761 * 210.00296 * 15 14 11 43 43 H 1.09006 * 109.47241 * 329.99804 * 15 14 11 44 44 H 1.09000 * 109.47080 * 299.99533 * 18 16 14 45 45 H 1.08993 * 109.47251 * 60.00389 * 18 16 14 46 46 H 0.97004 * 119.99739 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5089 0.6761 0.0005 5 6 3.5654 -0.6253 0.0004 6 6 4.8177 -1.4638 0.0003 7 1 4.5674 -2.4906 -0.2662 8 6 5.4487 -1.4378 1.3939 9 7 5.7697 -0.9219 -0.9785 10 6 6.6937 -1.9635 -1.4465 11 6 7.6679 -1.3624 -2.4615 12 1 7.1189 -1.0445 -3.3479 13 6 8.7073 -2.4139 -2.8553 14 7 8.3435 -0.2073 -1.8653 15 6 9.1523 -0.3759 -0.6554 16 6 8.2209 1.0103 -2.4296 17 8 7.5510 1.1500 -3.4309 18 6 8.9154 2.1986 -1.8159 19 16 8.5597 3.6781 -2.7962 20 6 9.4689 4.8779 -1.8806 21 1 10.0190 4.5817 -0.9996 22 6 9.4773 6.2037 -2.2908 23 7 8.8064 6.5648 -3.3642 24 14 10.4407 7.4758 -1.3196 25 1 11.8767 7.0981 -1.2972 26 1 10.2884 8.8070 -1.9600 27 1 9.9222 7.5338 0.0708 28 8 2.3021 -1.0831 -0.0057 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3634 -0.8902 0.5134 31 1 -0.3634 0.8897 0.5142 32 1 4.7423 -1.8399 2.1202 33 1 6.3547 -2.0439 1.3938 34 1 5.6989 -0.4110 1.6605 35 1 6.2742 -0.1365 -0.5955 36 1 6.1272 -2.7667 -1.9176 37 1 7.2520 -2.3614 -0.5991 38 1 9.2564 -2.7318 -1.9690 39 1 8.2047 -3.2733 -3.2990 40 1 9.4011 -1.9858 -3.5788 41 1 10.1811 -0.6029 -0.9348 42 1 9.1289 0.5443 -0.0716 43 1 8.7485 -1.1945 -0.0595 44 1 8.5560 2.3433 -0.7971 45 1 9.9910 2.0228 -1.8002 46 1 8.8120 7.4916 -3.6507 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753679847.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:16 Heat of formation + Delta-G solvation = 9.714792 kcal Electronic energy + Delta-G solvation = -27822.527495 eV Core-core repulsion = 23876.054456 eV Total energy + Delta-G solvation = -3946.473039 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.151 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.27740 -39.82388 -37.69889 -36.21399 -35.73209 -33.15531 -32.35775 -32.29848 -30.18417 -28.63427 -28.15481 -26.80095 -25.66194 -25.40479 -24.40925 -22.62926 -21.58180 -21.47868 -18.99015 -17.71174 -17.60217 -17.36747 -16.84565 -16.28946 -15.78350 -15.57260 -15.20283 -14.86052 -14.74070 -14.58776 -14.03645 -13.77095 -13.47125 -13.31985 -13.27855 -13.11960 -13.03073 -12.78609 -12.65983 -12.41663 -12.38143 -12.35132 -12.11522 -12.00701 -11.90708 -11.80679 -11.50721 -11.07478 -10.98528 -10.96479 -10.90335 -10.70475 -9.74450 -9.59003 -9.24790 -8.99034 -8.85030 -8.46283 -8.13782 -6.41018 -6.14172 -3.83955 1.04748 2.01151 2.37804 2.96831 3.15318 3.28286 3.30198 3.33790 3.60639 3.66652 3.82645 4.27096 4.27447 4.40292 4.50916 4.69708 4.84628 4.88361 4.96024 5.00807 5.02432 5.04771 5.13122 5.15933 5.20575 5.25082 5.32199 5.34361 5.37735 5.42191 5.50226 5.54008 5.60220 5.63295 5.69652 5.70457 5.94782 5.99287 6.09486 6.19800 6.56755 6.73328 7.05195 7.58291 7.65908 8.29656 8.41794 8.65723 9.30731 10.93199 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.009360 B = 0.003087 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2990.729465 B = 9067.506024 C =11038.502958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.151 3.849 3 N -0.283 5.283 4 N -0.262 5.262 5 C 0.172 3.828 6 C 0.186 3.814 7 H 0.108 0.892 8 C -0.180 4.180 9 N -0.672 5.672 10 C 0.054 3.946 11 C 0.137 3.863 12 H 0.111 0.889 13 C -0.158 4.158 14 N -0.622 5.622 15 C 0.077 3.923 16 C 0.536 3.464 17 O -0.507 6.507 18 C -0.150 4.150 19 S -0.059 6.059 20 C -0.535 4.535 21 H 0.071 0.929 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.917 3.083 25 H -0.275 1.275 26 H -0.283 1.283 27 H -0.274 1.274 28 O -0.230 6.230 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.362 0.638 36 H 0.084 0.916 37 H 0.038 0.962 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.088 -24.250 10.486 27.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.059 4.059 3 N -0.131 5.131 4 N -0.107 5.107 5 C -0.041 4.041 6 C 0.073 3.927 7 H 0.126 0.874 8 C -0.239 4.239 9 N -0.307 5.307 10 C -0.076 4.076 11 C 0.033 3.967 12 H 0.129 0.871 13 C -0.216 4.216 14 N -0.360 5.360 15 C -0.067 4.067 16 C 0.324 3.676 17 O -0.380 6.380 18 C -0.300 4.300 19 S 0.168 5.832 20 C -0.683 4.683 21 H 0.089 0.911 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.199 1.199 28 O -0.110 6.110 29 H 0.116 0.884 30 H 0.109 0.891 31 H 0.124 0.876 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.184 0.816 36 H 0.103 0.897 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.106 0.894 45 H 0.105 0.895 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.190 -22.699 8.323 26.236 hybrid contribution 1.621 -0.624 2.606 3.132 sum -8.569 -23.323 10.928 27.145 Atomic orbital electron populations 1.20318 0.80311 1.05458 1.05228 1.28026 0.97780 0.79773 1.00359 1.74491 0.96199 1.25522 1.16861 1.74436 1.11710 1.09020 1.15583 1.27853 0.84749 0.91765 0.99696 1.19667 0.84808 0.95433 0.92764 0.87447 1.22514 1.01619 1.04136 0.95625 1.60000 1.20520 1.10250 1.39882 1.22399 0.93496 0.93882 0.97800 1.21041 0.92413 0.85858 0.97362 0.87124 1.22088 0.99254 0.98453 1.01849 1.47918 1.51500 1.07843 1.28698 1.21741 0.95240 1.02627 0.87083 1.20304 0.80380 0.83058 0.83898 1.90701 1.38879 1.83922 1.24471 1.23550 1.02623 0.99170 1.04665 1.85442 1.66871 0.94988 1.35895 1.22814 1.35622 0.94945 1.14913 0.91086 1.24976 0.95608 0.97678 0.95286 1.70014 1.39370 1.18151 1.22726 0.86248 0.79919 0.79669 0.79791 1.20013 1.20846 1.19941 1.84719 1.17515 1.38559 1.70160 0.88357 0.89141 0.87572 0.91316 0.90545 0.90756 0.81583 0.89726 0.94378 0.92474 0.91547 0.91662 0.92656 0.90594 0.91820 0.89351 0.89483 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.33 10.51 36.00 0.38 0.05 16 2 C 0.15 1.79 8.48 -12.94 -0.11 1.68 16 3 N -0.28 -4.52 12.22 32.55 0.40 -4.12 16 4 N -0.26 -4.38 12.22 32.55 0.40 -3.98 16 5 C 0.17 2.26 7.32 -12.94 -0.09 2.17 16 6 C 0.19 1.78 3.13 -68.86 -0.22 1.57 16 7 H 0.11 0.78 7.80 -51.93 -0.40 0.38 16 8 C -0.18 -1.34 9.14 37.16 0.34 -1.00 16 9 N -0.67 -7.83 6.22 -107.96 -0.67 -8.50 16 10 C 0.05 0.47 4.78 -3.83 -0.02 0.45 16 11 C 0.14 1.56 2.95 -67.93 -0.20 1.36 16 12 H 0.11 1.64 6.90 -51.93 -0.36 1.28 16 13 C -0.16 -1.36 9.19 37.16 0.34 -1.02 16 14 N -0.62 -8.31 1.83 -173.93 -0.32 -8.63 16 15 C 0.08 0.74 9.28 59.85 0.56 1.30 16 16 C 0.54 10.23 7.69 -10.99 -0.08 10.14 16 17 O -0.51 -11.85 15.19 5.56 0.08 -11.77 16 18 C -0.15 -3.10 4.71 36.01 0.17 -2.93 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 20 C -0.53 -15.57 9.50 30.94 0.29 -15.28 16 21 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 22 C 0.07 2.15 5.49 -17.43 -0.10 2.06 16 23 N -0.87 -26.82 13.22 55.49 0.73 -26.09 16 24 Si 0.92 21.89 29.55 -169.99 -5.02 16.87 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 28 O -0.23 -2.78 10.87 5.39 0.06 -2.72 16 29 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.42 7.45 -51.93 -0.39 0.03 16 34 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 35 H 0.36 4.83 7.60 -39.29 -0.30 4.53 16 36 H 0.08 0.63 8.05 -51.93 -0.42 0.21 16 37 H 0.04 0.25 6.17 -51.93 -0.32 -0.07 16 38 H 0.06 0.41 7.67 -51.93 -0.40 0.01 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.77 6.44 -51.92 -0.33 0.44 16 43 H 0.06 0.44 6.53 -51.93 -0.34 0.10 16 44 H 0.09 1.71 7.40 -51.92 -0.38 1.32 16 45 H 0.09 1.67 8.11 -51.92 -0.42 1.25 16 46 H 0.27 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 396.76 15.07 5.98 5.98 Total: -1.00 -39.02 396.76 -6.30 -45.33 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.99 Total: 0.94 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 1.26 Total: 0.55 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: 0.54 Total: -51.32 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: 0.14 Total: -14.49 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -39.02 -6.30 -45.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753679847.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.043 kcal (2) G-P(sol) polarization free energy of solvation -39.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds