Wall clock time and date at job start Wed Apr 1 2020 01:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30268 * 126.28520 * 2 1 4 4 N 1.28668 * 109.38202 * 179.73129 * 3 2 1 5 5 C 1.30283 * 109.37859 * 0.44108 * 4 3 2 6 6 C 1.50701 * 126.28016 * 179.82439 * 5 4 3 7 7 H 1.08995 * 109.46565 * 164.69079 * 6 5 4 8 8 C 1.53002 * 109.47122 * 284.69367 * 6 5 4 9 9 N 1.46897 * 109.47027 * 44.69486 * 6 5 4 10 10 C 1.46905 * 111.00099 * 154.99881 * 9 6 5 11 11 C 1.52999 * 109.46991 * 180.02562 * 10 9 6 12 12 H 1.09000 * 109.47160 * 294.99579 * 11 10 9 13 13 C 1.53006 * 109.46626 * 174.99948 * 11 10 9 14 14 N 1.46492 * 109.47381 * 54.99798 * 11 10 9 15 15 C 1.46499 * 120.00171 * 59.99955 * 14 11 10 16 16 C 1.34779 * 119.99992 * 239.99798 * 14 11 10 17 17 O 1.21282 * 120.00170 * 359.97438 * 16 14 11 18 18 C 1.50701 * 120.00024 * 180.02562 * 16 14 11 19 19 S 1.80997 * 109.47106 * 179.97438 * 18 16 14 20 20 C 1.76198 * 99.99794 * 179.97438 * 19 18 16 21 21 H 1.08003 * 120.00461 * 359.97438 * 20 19 18 22 22 C 1.38801 * 119.99797 * 180.02562 * 20 19 18 23 23 N 1.31635 * 119.99781 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00122 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47310 * 90.00238 * 24 22 20 26 26 H 1.48500 * 109.47092 * 210.00188 * 24 22 20 27 27 H 1.48500 * 109.47001 * 329.99641 * 24 22 20 28 28 O 1.34359 * 107.43359 * 359.56930 * 5 4 3 29 29 H 1.08993 * 109.47366 * 270.00447 * 1 2 3 30 30 H 1.09002 * 109.46867 * 29.99759 * 1 2 3 31 31 H 1.09003 * 109.47370 * 149.99804 * 1 2 3 32 32 H 1.09000 * 109.47359 * 299.99813 * 8 6 5 33 33 H 1.08997 * 109.46909 * 60.00522 * 8 6 5 34 34 H 1.09001 * 109.46797 * 180.02562 * 8 6 5 35 35 H 1.00905 * 111.00249 * 278.95094 * 9 6 5 36 36 H 1.08998 * 109.46627 * 59.99589 * 10 9 6 37 37 H 1.09002 * 109.46785 * 299.99745 * 10 9 6 38 38 H 1.09001 * 109.46998 * 179.97438 * 13 11 10 39 39 H 1.09000 * 109.47050 * 299.99699 * 13 11 10 40 40 H 1.09001 * 109.46801 * 59.99811 * 13 11 10 41 41 H 1.09004 * 109.47475 * 89.99853 * 15 14 11 42 42 H 1.08994 * 109.47510 * 209.99690 * 15 14 11 43 43 H 1.09004 * 109.47127 * 330.00276 * 15 14 11 44 44 H 1.09007 * 109.46947 * 300.00193 * 18 16 14 45 45 H 1.09004 * 109.47134 * 60.00029 * 18 16 14 46 46 H 0.97000 * 119.99845 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5090 0.6760 0.0057 5 6 3.5653 -0.6256 0.0001 6 6 4.8176 -1.4641 0.0000 7 1 4.5672 -2.4910 0.2660 8 6 5.4491 -1.4375 -1.3934 9 7 5.7693 -0.9227 0.9794 10 6 6.6932 -1.9647 1.4472 11 6 7.6663 -1.3644 2.4639 12 1 8.2944 -0.6222 1.9712 13 6 8.5465 -2.4735 3.0436 14 7 6.9111 -0.7253 3.5442 15 6 5.9893 -1.5176 4.3619 16 6 7.0644 0.5918 3.7860 17 8 7.8279 1.2477 3.1095 18 6 6.2880 1.2491 4.8978 19 16 6.7094 3.0079 4.9701 20 6 5.6890 3.5120 6.3151 21 1 5.0593 2.7909 6.8151 22 6 5.6937 4.8361 6.7315 23 7 4.9317 5.2126 7.7367 24 14 6.7812 6.0837 5.8654 25 1 6.0304 6.6992 4.7417 26 1 7.1860 7.1399 6.8276 27 1 7.9917 5.4039 5.3385 28 8 2.3021 -1.0832 0.0000 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5139 32 1 4.7429 -1.8392 -2.1200 33 1 5.6995 -0.4106 -1.6592 34 1 6.3545 -2.0443 -1.3934 35 1 6.2741 -0.1371 0.5970 36 1 7.2517 -2.3621 0.5998 37 1 6.1264 -2.7681 1.9178 38 1 9.2401 -2.0458 3.7676 39 1 7.9184 -3.2157 3.5363 40 1 9.1083 -2.9490 2.2396 41 1 6.5230 -1.9235 5.2214 42 1 5.1731 -0.8833 4.7076 43 1 5.5860 -2.3359 3.7653 44 1 5.2200 1.1384 4.7099 45 1 6.5409 0.7760 5.8467 46 1 4.9347 6.1380 8.0274 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753679848.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:20 Heat of formation + Delta-G solvation = 8.963301 kcal Electronic energy + Delta-G solvation = -28000.215065 eV Core-core repulsion = 24053.709438 eV Total energy + Delta-G solvation = -3946.505626 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.151 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.28793 -39.77179 -37.76464 -36.22578 -35.79141 -33.19772 -32.35575 -32.27658 -30.21011 -28.69209 -28.16211 -26.75726 -25.69269 -25.51593 -24.43976 -22.64196 -21.61977 -21.53003 -19.11454 -17.63535 -17.61979 -17.36677 -16.91131 -16.21548 -15.91728 -15.34958 -15.23114 -14.94528 -14.75959 -14.62661 -14.10702 -13.76688 -13.58835 -13.37310 -13.23067 -13.13204 -13.00613 -12.89032 -12.70747 -12.48825 -12.41250 -12.32839 -12.08501 -12.02535 -12.00341 -11.82404 -11.65142 -11.16929 -11.02650 -10.92658 -10.92049 -10.47986 -9.77322 -9.60090 -9.32668 -8.91515 -8.84124 -8.44216 -8.37581 -6.80156 -6.20749 -3.90682 1.03693 1.99838 2.36561 2.82619 3.11153 3.28564 3.41747 3.58132 3.59674 3.68586 3.80681 4.26305 4.36962 4.41625 4.48003 4.57171 4.80412 4.86272 4.89529 4.97224 4.98155 5.04129 5.13297 5.14765 5.18631 5.19227 5.25211 5.29692 5.34503 5.40426 5.45456 5.48261 5.54386 5.60313 5.66935 5.77112 5.88038 5.94671 5.98284 6.14974 6.50120 6.72247 7.01244 7.59944 8.02506 8.28286 8.49670 8.60834 9.26061 10.88671 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.008839 B = 0.003556 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3166.925451 B = 7873.230704 C = 9974.470257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.154 3.846 3 N -0.284 5.284 4 N -0.262 5.262 5 C 0.170 3.830 6 C 0.187 3.813 7 H 0.106 0.894 8 C -0.179 4.179 9 N -0.670 5.670 10 C 0.052 3.948 11 C 0.138 3.862 12 H 0.102 0.898 13 C -0.158 4.158 14 N -0.603 5.603 15 C 0.086 3.914 16 C 0.540 3.460 17 O -0.523 6.523 18 C -0.118 4.118 19 S -0.142 6.142 20 C -0.518 4.518 21 H 0.086 0.914 22 C 0.096 3.904 23 N -0.883 5.883 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.275 1.275 27 H -0.235 1.235 28 O -0.230 6.230 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.362 0.638 36 H 0.046 0.954 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.051 0.949 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.093 -22.852 -17.296 28.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.057 4.057 3 N -0.131 5.131 4 N -0.108 5.108 5 C -0.042 4.042 6 C 0.075 3.925 7 H 0.124 0.876 8 C -0.239 4.239 9 N -0.304 5.304 10 C -0.078 4.078 11 C 0.034 3.966 12 H 0.120 0.880 13 C -0.217 4.217 14 N -0.338 5.338 15 C -0.057 4.057 16 C 0.328 3.672 17 O -0.398 6.398 18 C -0.268 4.268 19 S 0.084 5.916 20 C -0.666 4.666 21 H 0.105 0.895 22 C -0.113 4.113 23 N -0.520 5.520 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.201 1.201 27 H -0.159 1.159 28 O -0.110 6.110 29 H 0.118 0.882 30 H 0.124 0.876 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.184 0.816 36 H 0.064 0.936 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.113 0.887 45 H 0.111 0.889 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.084 -20.559 -17.623 27.158 hybrid contribution -0.657 -1.424 0.022 1.568 sum -2.741 -21.982 -17.601 28.293 Atomic orbital electron populations 1.20333 0.80289 1.05437 1.05352 1.28030 0.97788 0.79710 1.00160 1.74490 0.96186 1.25513 1.16918 1.74419 1.11774 1.09025 1.15599 1.27832 0.84754 0.91768 0.99829 1.19639 0.84794 0.95371 0.92705 0.87572 1.22510 1.01616 1.04108 0.95637 1.59998 1.20554 1.10106 1.39740 1.22435 0.93999 0.94037 0.97318 1.20986 0.92287 0.95666 0.87696 0.87972 1.22082 0.99775 0.98167 1.01627 1.47555 1.44035 1.08368 1.33808 1.21644 0.93294 0.96294 0.94510 1.20164 0.81768 0.80926 0.84334 1.90661 1.37398 1.62397 1.49358 1.23273 1.02759 1.01576 0.99227 1.84746 1.59432 1.01069 1.46356 1.22326 1.28406 0.98660 1.17213 0.89548 1.24701 0.94836 0.97549 0.94186 1.69946 1.38085 1.18046 1.25892 0.86734 0.83019 0.81968 0.80142 1.19176 1.20052 1.15917 1.84721 1.17516 1.38575 1.70164 0.88237 0.87561 0.89145 0.91402 0.90771 0.90509 0.81643 0.93595 0.90407 0.91634 0.92233 0.91627 0.93078 0.90912 0.91620 0.88749 0.88903 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.35 10.51 36.01 0.38 0.02 16 2 C 0.15 1.82 8.48 -12.94 -0.11 1.71 16 3 N -0.28 -4.48 12.22 32.55 0.40 -4.08 16 4 N -0.26 -4.24 12.22 32.55 0.40 -3.84 16 5 C 0.17 2.15 7.32 -12.94 -0.09 2.05 16 6 C 0.19 1.66 3.13 -68.86 -0.22 1.45 16 7 H 0.11 0.72 7.80 -51.93 -0.40 0.32 16 8 C -0.18 -1.23 9.14 37.16 0.34 -0.89 16 9 N -0.67 -7.07 5.95 -107.95 -0.64 -7.71 16 10 C 0.05 0.41 4.73 -3.82 -0.02 0.39 16 11 C 0.14 1.45 2.88 -67.93 -0.20 1.26 16 12 H 0.10 1.31 6.90 -51.93 -0.36 0.95 16 13 C -0.16 -1.27 9.19 37.16 0.34 -0.93 16 14 N -0.60 -8.10 2.48 -173.93 -0.43 -8.53 16 15 C 0.09 0.93 9.30 59.85 0.56 1.48 16 16 C 0.54 10.12 7.69 -10.98 -0.08 10.03 16 17 O -0.52 -11.49 15.19 5.56 0.08 -11.41 16 18 C -0.12 -2.46 4.71 36.01 0.17 -2.29 16 19 S -0.14 -3.80 18.55 -107.50 -1.99 -5.79 16 20 C -0.52 -15.54 10.04 30.94 0.31 -15.23 16 21 H 0.09 2.70 8.03 -52.48 -0.42 2.28 16 22 C 0.10 2.89 5.50 -17.43 -0.10 2.80 16 23 N -0.88 -27.43 13.97 55.49 0.78 -26.65 16 24 Si 0.86 22.64 27.74 -169.99 -4.72 17.93 16 25 H -0.27 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.24 -6.20 6.74 56.52 0.38 -5.82 16 28 O -0.23 -2.73 10.87 5.39 0.06 -2.67 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 34 H 0.08 0.39 7.45 -51.93 -0.39 0.00 16 35 H 0.36 4.42 8.47 -39.29 -0.33 4.09 16 36 H 0.05 0.27 7.44 -51.93 -0.39 -0.12 16 37 H 0.08 0.53 6.79 -51.93 -0.35 0.18 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.41 7.67 -51.93 -0.40 0.01 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.88 6.44 -51.93 -0.33 0.54 16 43 H 0.07 0.56 6.53 -51.93 -0.34 0.22 16 44 H 0.09 1.94 7.40 -51.91 -0.38 1.55 16 45 H 0.09 1.81 8.11 -51.91 -0.42 1.39 16 46 H 0.27 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 395.24 15.07 5.96 5.96 Total: -1.00 -38.56 395.24 -5.89 -44.45 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -7.06 Total: 0.50 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: 1.28 Total: 1.85 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: 0.50 Total: -50.81 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: 0.14 Total: -14.08 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.72 Total: 17.93 kcal Atomic # 16 Polarization: -3.80 SS G_CDS: -1.99 Total: -5.79 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -38.56 -5.89 -44.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753679848.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.411 kcal (2) G-P(sol) polarization free energy of solvation -38.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds