Wall clock time and date at job start Wed Apr 1 2020 01:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30268 * 126.28520 * 2 1 4 4 N 1.28668 * 109.38202 * 179.73129 * 3 2 1 5 5 C 1.30283 * 109.37859 * 0.44108 * 4 3 2 6 6 C 1.50701 * 126.28016 * 179.82439 * 5 4 3 7 7 H 1.08995 * 109.46565 * 164.69079 * 6 5 4 8 8 C 1.53002 * 109.47122 * 284.69367 * 6 5 4 9 9 N 1.46897 * 109.47027 * 44.69486 * 6 5 4 10 10 C 1.46905 * 111.00099 * 154.99881 * 9 6 5 11 11 C 1.52999 * 109.46991 * 180.02562 * 10 9 6 12 12 H 1.09000 * 109.47160 * 294.99579 * 11 10 9 13 13 C 1.53006 * 109.46626 * 174.99948 * 11 10 9 14 14 N 1.46492 * 109.47381 * 54.99798 * 11 10 9 15 15 C 1.46499 * 120.00171 * 59.99955 * 14 11 10 16 16 C 1.34779 * 119.99992 * 239.99798 * 14 11 10 17 17 O 1.21282 * 120.00170 * 359.97438 * 16 14 11 18 18 C 1.50701 * 120.00024 * 180.02562 * 16 14 11 19 19 S 1.80997 * 109.47106 * 179.97438 * 18 16 14 20 20 C 1.76198 * 99.99794 * 179.97438 * 19 18 16 21 21 H 1.08003 * 120.00461 * 359.97438 * 20 19 18 22 22 C 1.38801 * 119.99797 * 180.02562 * 20 19 18 23 23 N 1.31635 * 119.99781 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00122 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47310 * 90.00238 * 24 22 20 26 26 H 1.48500 * 109.47092 * 210.00188 * 24 22 20 27 27 H 1.48500 * 109.47001 * 329.99641 * 24 22 20 28 28 O 1.34359 * 107.43359 * 359.56930 * 5 4 3 29 29 H 1.08993 * 109.47366 * 270.00447 * 1 2 3 30 30 H 1.09002 * 109.46867 * 29.99759 * 1 2 3 31 31 H 1.09003 * 109.47370 * 149.99804 * 1 2 3 32 32 H 1.09000 * 109.47359 * 299.99813 * 8 6 5 33 33 H 1.08997 * 109.46909 * 60.00522 * 8 6 5 34 34 H 1.09001 * 109.46797 * 180.02562 * 8 6 5 35 35 H 1.00905 * 111.00249 * 278.95094 * 9 6 5 36 36 H 1.08998 * 109.46627 * 59.99589 * 10 9 6 37 37 H 1.09002 * 109.46785 * 299.99745 * 10 9 6 38 38 H 1.09001 * 109.46998 * 179.97438 * 13 11 10 39 39 H 1.09000 * 109.47050 * 299.99699 * 13 11 10 40 40 H 1.09001 * 109.46801 * 59.99811 * 13 11 10 41 41 H 1.09004 * 109.47475 * 89.99853 * 15 14 11 42 42 H 1.08994 * 109.47510 * 209.99690 * 15 14 11 43 43 H 1.09004 * 109.47127 * 330.00276 * 15 14 11 44 44 H 1.09007 * 109.46947 * 300.00193 * 18 16 14 45 45 H 1.09004 * 109.47134 * 60.00029 * 18 16 14 46 46 H 0.97000 * 119.99845 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5090 0.6760 0.0057 5 6 3.5653 -0.6256 0.0001 6 6 4.8176 -1.4641 0.0000 7 1 4.5672 -2.4910 0.2660 8 6 5.4491 -1.4375 -1.3934 9 7 5.7693 -0.9227 0.9794 10 6 6.6932 -1.9647 1.4472 11 6 7.6663 -1.3644 2.4639 12 1 8.2944 -0.6222 1.9712 13 6 8.5465 -2.4735 3.0436 14 7 6.9111 -0.7253 3.5442 15 6 5.9893 -1.5176 4.3619 16 6 7.0644 0.5918 3.7860 17 8 7.8279 1.2477 3.1095 18 6 6.2880 1.2491 4.8978 19 16 6.7094 3.0079 4.9701 20 6 5.6890 3.5120 6.3151 21 1 5.0593 2.7909 6.8151 22 6 5.6937 4.8361 6.7315 23 7 4.9317 5.2126 7.7367 24 14 6.7812 6.0837 5.8654 25 1 6.0304 6.6992 4.7417 26 1 7.1860 7.1399 6.8276 27 1 7.9917 5.4039 5.3385 28 8 2.3021 -1.0832 0.0000 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5139 32 1 4.7429 -1.8392 -2.1200 33 1 5.6995 -0.4106 -1.6592 34 1 6.3545 -2.0443 -1.3934 35 1 6.2741 -0.1371 0.5970 36 1 7.2517 -2.3621 0.5998 37 1 6.1264 -2.7681 1.9178 38 1 9.2401 -2.0458 3.7676 39 1 7.9184 -3.2157 3.5363 40 1 9.1083 -2.9490 2.2396 41 1 6.5230 -1.9235 5.2214 42 1 5.1731 -0.8833 4.7076 43 1 5.5860 -2.3359 3.7653 44 1 5.2200 1.1384 4.7099 45 1 6.5409 0.7760 5.8467 46 1 4.9347 6.1380 8.0274 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753679848.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:19 Heat of formation + Delta-G solvation = -24.152065 kcal Electronic energy + Delta-G solvation = -28001.651055 eV Core-core repulsion = 24053.709438 eV Total energy + Delta-G solvation = -3947.941616 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.151 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.23062 -40.99425 -38.65860 -37.20042 -36.86083 -34.69223 -34.10837 -33.16136 -30.99656 -30.09298 -28.90382 -27.87562 -27.74173 -26.36580 -25.28152 -23.51748 -22.66393 -22.30863 -20.37799 -19.59433 -18.55467 -18.31066 -18.22700 -17.27539 -17.09094 -16.89787 -16.38418 -16.23217 -16.02902 -15.42629 -15.41731 -14.95106 -14.77128 -14.43586 -14.37935 -14.13412 -13.77415 -13.67227 -13.58646 -13.44425 -13.40862 -13.36396 -13.24206 -13.04066 -13.02634 -12.88821 -12.82089 -12.62726 -12.57644 -12.50282 -11.88128 -11.83616 -11.74748 -11.19108 -10.83011 -10.54408 -10.53896 -9.63188 -9.46960 -9.00426 -8.53623 -6.23717 0.15808 0.97646 1.18261 1.29828 1.38932 1.44751 1.53915 1.64373 2.16432 2.24107 2.68763 2.84616 2.86031 3.04880 3.53019 3.63762 3.72037 3.86025 3.95761 4.13450 4.17832 4.19420 4.28940 4.36809 4.38734 4.41106 4.43526 4.54067 4.55648 4.68495 4.72000 4.72675 4.77296 4.78736 4.85038 4.95850 5.03339 5.10789 5.14339 5.32416 5.67505 5.68992 5.89581 6.08064 6.16292 6.34652 6.91655 7.21403 7.32119 8.59181 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.008839 B = 0.003556 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3166.925451 B = 7873.230704 C = 9974.470257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.164 3.836 3 N -0.341 5.341 4 N -0.316 5.316 5 C 0.175 3.825 6 C 0.190 3.810 7 H 0.138 0.862 8 C -0.171 4.171 9 N -0.694 5.694 10 C 0.059 3.941 11 C 0.132 3.868 12 H 0.074 0.926 13 C -0.149 4.149 14 N -0.586 5.586 15 C 0.078 3.922 16 C 0.538 3.462 17 O -0.565 6.565 18 C -0.103 4.103 19 S -0.176 6.176 20 C -0.529 4.529 21 H 0.058 0.942 22 C 0.048 3.952 23 N -0.917 5.917 24 Si 0.914 3.086 25 H -0.266 1.266 26 H -0.254 1.254 27 H -0.237 1.237 28 O -0.229 6.229 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.121 0.879 32 H 0.076 0.924 33 H 0.050 0.950 34 H 0.103 0.897 35 H 0.348 0.652 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.044 0.956 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.070 0.930 42 H 0.056 0.944 43 H 0.099 0.901 44 H 0.095 0.905 45 H 0.106 0.894 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.997 -26.233 -18.532 32.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.047 4.047 3 N -0.187 5.187 4 N -0.161 5.161 5 C -0.038 4.038 6 C 0.078 3.922 7 H 0.155 0.845 8 C -0.230 4.230 9 N -0.326 5.326 10 C -0.070 4.070 11 C 0.029 3.971 12 H 0.093 0.907 13 C -0.208 4.208 14 N -0.319 5.319 15 C -0.064 4.064 16 C 0.325 3.675 17 O -0.444 6.444 18 C -0.253 4.253 19 S 0.051 5.949 20 C -0.677 4.677 21 H 0.077 0.923 22 C -0.158 4.158 23 N -0.555 5.555 24 Si 0.736 3.264 25 H -0.190 1.190 26 H -0.178 1.178 27 H -0.161 1.161 28 O -0.109 6.109 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.139 0.861 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.121 0.879 35 H 0.167 0.833 36 H 0.096 0.904 37 H 0.119 0.881 38 H 0.064 0.936 39 H 0.098 0.902 40 H 0.109 0.891 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.117 0.883 44 H 0.113 0.887 45 H 0.124 0.876 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.003 -23.991 -18.848 30.575 hybrid contribution -0.788 -0.577 0.405 1.058 sum -2.791 -24.568 -18.442 30.846 Atomic orbital electron populations 1.20685 0.76619 1.07371 1.06676 1.29043 0.99397 0.78924 0.97349 1.74386 0.96791 1.27688 1.19826 1.74309 1.12518 1.11202 1.18041 1.28653 0.85941 0.91357 0.97865 1.19944 0.83016 0.95714 0.93498 0.84477 1.22454 1.02726 1.03274 0.94542 1.59974 1.21302 1.10729 1.40640 1.22479 0.93548 0.93384 0.97564 1.21286 0.92827 0.95703 0.87319 0.90748 1.22027 0.99331 0.97347 1.02065 1.47563 1.43623 1.06580 1.34144 1.21895 0.92571 0.96451 0.95472 1.19771 0.81416 0.82767 0.83568 1.90643 1.39292 1.63869 1.50605 1.23235 1.03265 0.97494 1.01348 1.84645 1.58988 1.06393 1.44871 1.22450 1.28566 0.98588 1.18084 0.92329 1.25543 0.96074 0.99327 0.94834 1.70015 1.39360 1.19034 1.27061 0.85879 0.81199 0.79948 0.79418 1.19045 1.17798 1.16065 1.84749 1.17367 1.38434 1.70320 0.86946 0.86717 0.86067 0.90518 0.93075 0.87873 0.83292 0.90414 0.88090 0.93644 0.90207 0.89072 0.91191 0.92539 0.88259 0.88690 0.87580 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.61 10.51 71.24 0.75 0.14 16 2 C 0.16 3.81 8.48 88.34 0.75 4.56 16 3 N -0.34 -11.15 12.22 -165.50 -2.02 -13.17 16 4 N -0.32 -10.59 12.22 -165.50 -2.02 -12.61 16 5 C 0.18 4.32 7.32 88.34 0.65 4.97 16 6 C 0.19 2.94 3.13 44.17 0.14 3.07 16 7 H 0.14 1.26 7.80 -2.39 -0.02 1.24 16 8 C -0.17 -1.97 9.14 71.98 0.66 -1.31 16 9 N -0.69 -13.45 5.95 -495.45 -2.95 -16.40 16 10 C 0.06 0.71 4.73 86.30 0.41 1.12 16 11 C 0.13 2.48 2.88 44.99 0.13 2.61 16 12 H 0.07 1.86 6.90 -2.39 -0.02 1.85 16 13 C -0.15 -1.88 9.19 71.98 0.66 -1.22 16 14 N -0.59 -14.91 2.48 -822.59 -2.04 -16.95 16 15 C 0.08 1.48 9.30 127.77 1.19 2.67 16 16 C 0.54 20.29 7.69 87.66 0.67 20.96 16 17 O -0.56 -25.49 15.19 -3.04 -0.05 -25.54 16 18 C -0.10 -4.36 4.71 71.24 0.34 -4.02 16 19 S -0.18 -9.59 18.55 -56.49 -1.05 -10.64 16 20 C -0.53 -32.71 10.04 67.95 0.68 -32.03 16 21 H 0.06 3.82 8.03 -2.91 -0.02 3.79 16 22 C 0.05 2.93 5.50 84.86 0.47 3.39 16 23 N -0.92 -57.92 13.97 21.65 0.30 -57.62 16 24 Si 0.91 47.40 27.74 68.60 1.90 49.30 16 25 H -0.27 -13.62 7.11 99.48 0.71 -12.91 16 26 H -0.25 -12.16 7.11 99.48 0.71 -11.45 16 27 H -0.24 -12.27 6.74 99.48 0.67 -11.60 16 28 O -0.23 -5.14 10.87 -3.64 -0.04 -5.18 16 29 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.05 0.84 8.13 -2.39 -0.02 0.82 16 34 H 0.10 0.65 7.45 -2.39 -0.02 0.63 16 35 H 0.35 8.50 8.47 -89.69 -0.76 7.74 16 36 H 0.08 0.52 7.44 -2.39 -0.02 0.50 16 37 H 0.10 0.80 6.79 -2.39 -0.02 0.79 16 38 H 0.04 0.77 8.14 -2.39 -0.02 0.76 16 39 H 0.08 0.71 7.67 -2.39 -0.02 0.69 16 40 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 42 H 0.06 1.28 6.44 -2.39 -0.02 1.27 16 43 H 0.10 1.24 6.53 -2.39 -0.02 1.22 16 44 H 0.09 4.00 7.40 -2.39 -0.02 3.98 16 45 H 0.11 4.17 8.11 -2.39 -0.02 4.15 16 46 H 0.28 16.15 8.31 -92.71 -0.77 15.38 16 Total: -1.00 -89.67 395.24 -0.28 -89.95 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 0.20 Total: 13.96 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 7.49 Total: 4.91 kcal Atomic # 7 Polarization: -108.02 SS G_CDS: -8.74 Total: -116.75 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -0.09 Total: -30.72 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 1.90 Total: 49.30 kcal Atomic # 16 Polarization: -9.59 SS G_CDS: -1.05 Total: -10.64 kcal Total: -89.67 -0.28 -89.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753679848.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.799 kcal (2) G-P(sol) polarization free energy of solvation -89.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds