Wall clock time and date at job start Wed Apr 1 2020 01:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30271 * 126.28328 * 2 1 4 4 N 1.28667 * 109.38201 * 179.97438 * 3 2 1 5 5 C 1.30274 * 109.37654 * 359.97438 * 4 3 2 6 6 C 1.50708 * 126.27716 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.46720 * 195.02117 * 6 5 4 8 8 C 1.53005 * 109.47165 * 75.02294 * 6 5 4 9 9 N 1.46901 * 109.47091 * 315.02232 * 6 5 4 10 10 C 1.46900 * 110.99869 * 205.00190 * 9 6 5 11 11 C 1.53000 * 109.47017 * 180.02562 * 10 9 6 12 12 H 1.09002 * 109.47398 * 64.99849 * 11 10 9 13 13 C 1.53002 * 109.47233 * 185.00023 * 11 10 9 14 14 N 1.46499 * 109.46840 * 304.99523 * 11 10 9 15 15 C 1.46499 * 120.00271 * 300.00476 * 14 11 10 16 16 C 1.34783 * 119.99826 * 120.00322 * 14 11 10 17 17 O 1.21278 * 120.00109 * 359.97438 * 16 14 11 18 18 C 1.50703 * 120.00065 * 180.02562 * 16 14 11 19 19 S 1.80992 * 109.47161 * 180.02562 * 18 16 14 20 20 C 1.76202 * 100.00137 * 179.97438 * 19 18 16 21 21 H 1.08003 * 120.00027 * 0.02562 * 20 19 18 22 22 C 1.38795 * 120.00082 * 179.97438 * 20 19 18 23 23 N 1.31634 * 120.00014 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00084 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47230 * 90.00114 * 24 22 20 26 26 H 1.48497 * 109.47260 * 210.00325 * 24 22 20 27 27 H 1.48501 * 109.46981 * 330.00018 * 24 22 20 28 28 O 1.34363 * 126.27699 * 180.27803 * 2 1 3 29 29 H 1.09003 * 109.46855 * 89.98073 * 1 2 3 30 30 H 1.09002 * 109.47479 * 209.97726 * 1 2 3 31 31 H 1.08994 * 109.47212 * 329.98003 * 1 2 3 32 32 H 1.09001 * 109.46689 * 59.99537 * 8 6 5 33 33 H 1.08995 * 109.46730 * 179.97438 * 8 6 5 34 34 H 1.09001 * 109.47031 * 300.00059 * 8 6 5 35 35 H 1.00898 * 110.99537 * 81.04608 * 9 6 5 36 36 H 1.08991 * 109.47118 * 59.99842 * 10 9 6 37 37 H 1.09002 * 109.47096 * 299.99723 * 10 9 6 38 38 H 1.08996 * 109.47407 * 180.02562 * 13 11 10 39 39 H 1.09000 * 109.46986 * 299.99797 * 13 11 10 40 40 H 1.09002 * 109.47075 * 59.99068 * 13 11 10 41 41 H 1.08994 * 109.47057 * 89.99771 * 15 14 11 42 42 H 1.09006 * 109.46711 * 209.99932 * 15 14 11 43 43 H 1.08998 * 109.46853 * 329.99725 * 15 14 11 44 44 H 1.08999 * 109.46819 * 299.99778 * 18 16 14 45 45 H 1.08998 * 109.47107 * 59.99963 * 18 16 14 46 46 H 0.97005 * 119.99857 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2780 1.0501 0.0000 4 7 3.5091 0.6761 0.0005 5 6 3.5653 -0.6255 0.0015 6 6 4.8176 -1.4639 0.0018 7 1 4.5673 -2.4909 -0.2638 8 6 5.4492 -1.4369 1.3952 9 7 5.7694 -0.9229 -0.9778 10 6 6.6932 -1.9650 -1.4452 11 6 7.6671 -1.3648 -2.4611 12 1 8.2951 -0.6228 -1.9680 13 6 8.5475 -2.4740 -3.0406 14 7 6.9127 -0.7254 -3.5420 15 6 5.9912 -1.5175 -4.3602 16 6 7.0664 0.5917 -3.7835 17 8 7.8289 1.2475 -3.1058 18 6 6.2900 1.2496 -4.8950 19 16 6.7121 3.0081 -4.9669 20 6 5.6926 3.5127 -6.3126 21 1 5.0630 2.7919 -6.8130 22 6 5.6980 4.8367 -6.7289 23 7 6.4650 5.7154 -6.1187 24 14 4.6167 5.3718 -8.1551 25 1 3.2917 5.7991 -7.6385 26 1 5.2601 6.5059 -8.8657 27 1 4.4389 4.2358 -9.0947 28 8 2.3021 -1.0832 -0.0053 29 1 -0.3633 0.0003 -1.0277 30 1 -0.3634 -0.8902 0.5135 31 1 -0.3633 0.8897 0.5141 32 1 4.7429 -1.8382 2.1219 33 1 6.3546 -2.0436 1.3954 34 1 5.6995 -0.4098 1.6608 35 1 6.2740 -0.1371 -0.5957 36 1 6.1265 -2.7685 -1.9154 37 1 7.2518 -2.3621 -0.5977 38 1 9.2416 -2.0463 -3.7640 39 1 9.1087 -2.9498 -2.2364 40 1 7.9194 -3.2160 -3.5336 41 1 5.0000 -1.5046 -3.9070 42 1 5.9380 -1.0922 -5.3625 43 1 6.3500 -2.5450 -4.4201 44 1 6.5425 0.7766 -5.8440 45 1 5.2220 1.1393 -4.7068 46 1 6.4690 6.6407 -6.4100 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753679849.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:23 Heat of formation + Delta-G solvation = 9.145070 kcal Electronic energy + Delta-G solvation = -27947.459023 eV Core-core repulsion = 24000.961279 eV Total energy + Delta-G solvation = -3946.497744 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.151 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.25824 -39.66376 -37.68700 -36.19582 -35.71042 -33.14983 -32.33673 -32.21907 -30.15627 -28.54642 -28.13249 -26.71077 -25.62289 -25.38325 -24.39027 -22.61051 -21.54090 -21.46678 -19.01910 -17.61313 -17.59070 -17.33738 -16.79607 -16.16424 -15.84554 -15.25048 -15.14291 -14.81836 -14.72017 -14.59710 -14.09825 -13.78495 -13.59997 -13.31313 -13.18745 -13.07965 -12.87667 -12.87035 -12.62029 -12.38044 -12.33050 -12.14696 -12.10622 -12.00018 -11.85669 -11.78226 -11.56206 -10.99395 -10.96509 -10.91482 -10.88112 -10.67995 -9.70967 -9.57230 -9.20387 -8.97646 -8.78600 -8.33565 -8.10317 -6.37708 -6.12466 -3.81343 1.06603 2.02962 2.39779 3.05094 3.24843 3.28496 3.32335 3.36191 3.62570 3.71428 3.86463 4.29246 4.29362 4.40930 4.52520 4.63718 4.88874 4.94549 4.99004 5.01133 5.09936 5.15094 5.18968 5.19792 5.22120 5.22484 5.33018 5.35363 5.37818 5.51185 5.53712 5.57606 5.62308 5.69784 5.71131 5.86423 5.95661 6.03370 6.08087 6.27909 6.56231 6.81683 7.07554 7.67872 7.71379 8.31522 8.44164 8.74411 9.32691 10.95027 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.008632 B = 0.003456 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3242.840872 B = 8099.042716 C =10398.636882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.152 3.848 3 N -0.283 5.283 4 N -0.261 5.261 5 C 0.171 3.829 6 C 0.187 3.813 7 H 0.106 0.894 8 C -0.179 4.179 9 N -0.670 5.670 10 C 0.054 3.946 11 C 0.138 3.862 12 H 0.102 0.898 13 C -0.159 4.159 14 N -0.604 5.604 15 C 0.085 3.915 16 C 0.541 3.459 17 O -0.521 6.521 18 C -0.147 4.147 19 S -0.060 6.060 20 C -0.533 4.533 21 H 0.071 0.929 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.917 3.083 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.273 1.273 28 O -0.231 6.231 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.363 0.637 36 H 0.076 0.924 37 H 0.045 0.955 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.482 -23.512 13.399 27.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.059 4.059 3 N -0.130 5.130 4 N -0.107 5.107 5 C -0.041 4.041 6 C 0.075 3.925 7 H 0.124 0.876 8 C -0.239 4.239 9 N -0.304 5.304 10 C -0.076 4.076 11 C 0.033 3.967 12 H 0.120 0.880 13 C -0.218 4.218 14 N -0.340 5.340 15 C -0.059 4.059 16 C 0.330 3.670 17 O -0.396 6.396 18 C -0.298 4.298 19 S 0.167 5.833 20 C -0.681 4.681 21 H 0.089 0.911 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.743 3.257 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.198 1.198 28 O -0.110 6.110 29 H 0.117 0.883 30 H 0.108 0.892 31 H 0.124 0.876 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.184 0.816 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.103 0.897 45 H 0.105 0.895 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.343 -21.172 13.860 25.864 hybrid contribution -1.625 -1.752 -1.067 2.617 sum -6.968 -22.924 12.794 27.161 Atomic orbital electron populations 1.20323 0.80331 1.05420 1.05283 1.28022 0.97776 0.79750 1.00312 1.74493 0.96203 1.25507 1.16840 1.74429 1.11719 1.09011 1.15571 1.27856 0.84739 0.91772 0.99755 1.19645 0.84814 0.95339 0.92731 0.87610 1.22511 1.01595 1.04141 0.95617 1.59992 1.20592 1.10109 1.39680 1.22426 0.93917 0.93954 0.97310 1.20972 0.92265 0.95621 0.87828 0.87956 1.22094 0.99746 0.98249 1.01668 1.47586 1.44187 1.08489 1.33724 1.21647 0.93248 0.95599 0.95390 1.20191 0.81660 0.80759 0.84430 1.90663 1.37308 1.62336 1.49268 1.23515 1.02474 1.05133 0.98633 1.85355 1.57989 0.95141 1.44856 1.22863 1.29223 0.97312 1.18738 0.91119 1.24970 0.95833 0.95475 0.97268 1.70027 1.37092 1.03248 1.39951 0.86198 0.80045 0.78265 0.81173 1.20296 1.20789 1.19757 1.84721 1.17539 1.38569 1.70184 0.88314 0.89166 0.87576 0.91443 0.90508 0.90736 0.81594 0.90547 0.93733 0.91601 0.91619 0.92257 0.92857 0.91081 0.91784 0.89675 0.89495 0.92283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.36 10.51 36.01 0.38 0.02 16 2 C 0.15 1.83 8.48 -12.94 -0.11 1.72 16 3 N -0.28 -4.56 12.22 32.55 0.40 -4.16 16 4 N -0.26 -4.34 12.22 32.55 0.40 -3.94 16 5 C 0.17 2.22 7.32 -12.94 -0.09 2.13 16 6 C 0.19 1.75 3.13 -68.86 -0.22 1.53 16 7 H 0.11 0.76 7.80 -51.93 -0.40 0.36 16 8 C -0.18 -1.31 9.14 37.16 0.34 -0.97 16 9 N -0.67 -7.47 5.95 -107.95 -0.64 -8.11 16 10 C 0.05 0.46 4.78 -3.82 -0.02 0.44 16 11 C 0.14 1.54 2.88 -67.93 -0.20 1.34 16 12 H 0.10 1.39 6.90 -51.93 -0.36 1.03 16 13 C -0.16 -1.35 9.17 37.16 0.34 -1.01 16 14 N -0.60 -8.54 2.48 -173.93 -0.43 -8.98 16 15 C 0.08 0.95 9.40 59.85 0.56 1.52 16 16 C 0.54 10.67 7.69 -10.98 -0.08 10.58 16 17 O -0.52 -12.08 15.19 5.56 0.08 -12.00 16 18 C -0.15 -3.20 4.71 36.01 0.17 -3.03 16 19 S -0.06 -1.71 20.57 -107.50 -2.21 -3.93 16 20 C -0.53 -15.82 9.50 30.94 0.29 -15.53 16 21 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 22 C 0.07 2.17 5.49 -17.43 -0.10 2.08 16 23 N -0.87 -27.02 13.22 55.49 0.73 -26.29 16 24 Si 0.92 22.15 29.55 -169.99 -5.02 17.12 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 28 O -0.23 -2.80 10.87 5.38 0.06 -2.74 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.42 7.45 -51.93 -0.39 0.03 16 34 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 35 H 0.36 4.68 8.47 -39.29 -0.33 4.35 16 36 H 0.08 0.57 7.75 -51.93 -0.40 0.16 16 37 H 0.04 0.29 7.44 -51.93 -0.39 -0.10 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.43 6.66 -51.93 -0.35 0.08 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.84 6.44 -51.93 -0.33 0.50 16 43 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 44 H 0.09 1.71 7.40 -51.92 -0.38 1.33 16 45 H 0.09 1.85 8.11 -51.92 -0.42 1.43 16 46 H 0.27 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 397.91 15.07 6.00 6.00 Total: -1.00 -38.99 397.91 -6.39 -45.38 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -7.02 Total: 0.82 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: 1.27 Total: 0.83 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: 0.45 Total: -51.48 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: 0.14 Total: -14.74 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -38.99 -6.39 -45.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753679849.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.521 kcal (2) G-P(sol) polarization free energy of solvation -38.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds