Wall clock time and date at job start Wed Apr 1 2020 01:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30271 * 126.28328 * 2 1 4 4 N 1.28667 * 109.38201 * 179.97438 * 3 2 1 5 5 C 1.30274 * 109.37654 * 359.97438 * 4 3 2 6 6 C 1.50708 * 126.27716 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.46720 * 195.02117 * 6 5 4 8 8 C 1.53005 * 109.47165 * 75.02294 * 6 5 4 9 9 N 1.46901 * 109.47091 * 315.02232 * 6 5 4 10 10 C 1.46900 * 110.99869 * 205.00190 * 9 6 5 11 11 C 1.53000 * 109.47017 * 180.02562 * 10 9 6 12 12 H 1.09002 * 109.47398 * 64.99849 * 11 10 9 13 13 C 1.53002 * 109.47233 * 185.00023 * 11 10 9 14 14 N 1.46499 * 109.46840 * 304.99523 * 11 10 9 15 15 C 1.46499 * 120.00271 * 300.00476 * 14 11 10 16 16 C 1.34783 * 119.99826 * 120.00322 * 14 11 10 17 17 O 1.21278 * 120.00109 * 359.97438 * 16 14 11 18 18 C 1.50703 * 120.00065 * 180.02562 * 16 14 11 19 19 S 1.80992 * 109.47161 * 180.02562 * 18 16 14 20 20 C 1.76202 * 100.00137 * 179.97438 * 19 18 16 21 21 H 1.08003 * 120.00027 * 0.02562 * 20 19 18 22 22 C 1.38795 * 120.00082 * 179.97438 * 20 19 18 23 23 N 1.31634 * 120.00014 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00084 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47230 * 90.00114 * 24 22 20 26 26 H 1.48497 * 109.47260 * 210.00325 * 24 22 20 27 27 H 1.48501 * 109.46981 * 330.00018 * 24 22 20 28 28 O 1.34363 * 126.27699 * 180.27803 * 2 1 3 29 29 H 1.09003 * 109.46855 * 89.98073 * 1 2 3 30 30 H 1.09002 * 109.47479 * 209.97726 * 1 2 3 31 31 H 1.08994 * 109.47212 * 329.98003 * 1 2 3 32 32 H 1.09001 * 109.46689 * 59.99537 * 8 6 5 33 33 H 1.08995 * 109.46730 * 179.97438 * 8 6 5 34 34 H 1.09001 * 109.47031 * 300.00059 * 8 6 5 35 35 H 1.00898 * 110.99537 * 81.04608 * 9 6 5 36 36 H 1.08991 * 109.47118 * 59.99842 * 10 9 6 37 37 H 1.09002 * 109.47096 * 299.99723 * 10 9 6 38 38 H 1.08996 * 109.47407 * 180.02562 * 13 11 10 39 39 H 1.09000 * 109.46986 * 299.99797 * 13 11 10 40 40 H 1.09002 * 109.47075 * 59.99068 * 13 11 10 41 41 H 1.08994 * 109.47057 * 89.99771 * 15 14 11 42 42 H 1.09006 * 109.46711 * 209.99932 * 15 14 11 43 43 H 1.08998 * 109.46853 * 329.99725 * 15 14 11 44 44 H 1.08999 * 109.46819 * 299.99778 * 18 16 14 45 45 H 1.08998 * 109.47107 * 59.99963 * 18 16 14 46 46 H 0.97005 * 119.99857 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2780 1.0501 0.0000 4 7 3.5091 0.6761 0.0005 5 6 3.5653 -0.6255 0.0015 6 6 4.8176 -1.4639 0.0018 7 1 4.5673 -2.4909 -0.2638 8 6 5.4492 -1.4369 1.3952 9 7 5.7694 -0.9229 -0.9778 10 6 6.6932 -1.9650 -1.4452 11 6 7.6671 -1.3648 -2.4611 12 1 8.2951 -0.6228 -1.9680 13 6 8.5475 -2.4740 -3.0406 14 7 6.9127 -0.7254 -3.5420 15 6 5.9912 -1.5175 -4.3602 16 6 7.0664 0.5917 -3.7835 17 8 7.8289 1.2475 -3.1058 18 6 6.2900 1.2496 -4.8950 19 16 6.7121 3.0081 -4.9669 20 6 5.6926 3.5127 -6.3126 21 1 5.0630 2.7919 -6.8130 22 6 5.6980 4.8367 -6.7289 23 7 6.4650 5.7154 -6.1187 24 14 4.6167 5.3718 -8.1551 25 1 3.2917 5.7991 -7.6385 26 1 5.2601 6.5059 -8.8657 27 1 4.4389 4.2358 -9.0947 28 8 2.3021 -1.0832 -0.0053 29 1 -0.3633 0.0003 -1.0277 30 1 -0.3634 -0.8902 0.5135 31 1 -0.3633 0.8897 0.5141 32 1 4.7429 -1.8382 2.1219 33 1 6.3546 -2.0436 1.3954 34 1 5.6995 -0.4098 1.6608 35 1 6.2740 -0.1371 -0.5957 36 1 6.1265 -2.7685 -1.9154 37 1 7.2518 -2.3621 -0.5977 38 1 9.2416 -2.0463 -3.7640 39 1 9.1087 -2.9498 -2.2364 40 1 7.9194 -3.2160 -3.5336 41 1 5.0000 -1.5046 -3.9070 42 1 5.9380 -1.0922 -5.3625 43 1 6.3500 -2.5450 -4.4201 44 1 6.5425 0.7766 -5.8440 45 1 5.2220 1.1393 -4.7068 46 1 6.4690 6.6407 -6.4100 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753679849.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:22 Heat of formation + Delta-G solvation = -24.370293 kcal Electronic energy + Delta-G solvation = -27948.912358 eV Core-core repulsion = 24000.961279 eV Total energy + Delta-G solvation = -3947.951079 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.151 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.23190 -40.94823 -38.63688 -37.20141 -36.84631 -34.59729 -34.09657 -33.14564 -30.98044 -30.03113 -28.90289 -27.75633 -27.66135 -26.34899 -25.27382 -23.51174 -22.61775 -22.30563 -20.32995 -19.56048 -18.54853 -18.29075 -18.19267 -17.21472 -16.90007 -16.85443 -16.37156 -16.26376 -16.04082 -15.45640 -15.42301 -14.79841 -14.55968 -14.42051 -14.33130 -14.11476 -13.76527 -13.66833 -13.53791 -13.42986 -13.38937 -13.19496 -13.15922 -12.99731 -12.90223 -12.88737 -12.81778 -12.61872 -12.58278 -12.49833 -11.83392 -11.78484 -11.66902 -11.15492 -10.77688 -10.54689 -10.27356 -9.63731 -9.43071 -8.66793 -8.35341 -6.13352 0.15827 1.18194 1.25864 1.38942 1.40594 1.45343 1.56085 1.70387 2.19867 2.27863 2.86203 2.98204 3.04825 3.29482 3.53383 3.68965 3.75360 3.87446 3.98924 4.16816 4.18274 4.25166 4.31250 4.37074 4.38507 4.43052 4.45828 4.54287 4.55746 4.69806 4.72511 4.74267 4.74867 4.78261 4.86194 4.95922 5.03513 5.10523 5.14387 5.33242 5.39076 5.71471 5.91100 6.15702 6.18152 6.39245 7.05096 7.28022 7.32349 8.74204 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.008632 B = 0.003456 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3242.840872 B = 8099.042716 C =10398.636882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.164 3.836 3 N -0.341 5.341 4 N -0.317 5.317 5 C 0.176 3.824 6 C 0.190 3.810 7 H 0.138 0.862 8 C -0.171 4.171 9 N -0.694 5.694 10 C 0.061 3.939 11 C 0.131 3.869 12 H 0.070 0.930 13 C -0.150 4.150 14 N -0.588 5.588 15 C 0.078 3.922 16 C 0.537 3.463 17 O -0.568 6.568 18 C -0.120 4.120 19 S -0.151 6.151 20 C -0.548 4.548 21 H 0.078 0.922 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.269 1.269 26 H -0.274 1.274 27 H -0.257 1.257 28 O -0.229 6.229 29 H 0.113 0.887 30 H 0.121 0.879 31 H 0.114 0.886 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.049 0.951 35 H 0.346 0.654 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.044 0.956 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.055 0.945 42 H 0.064 0.936 43 H 0.105 0.895 44 H 0.103 0.897 45 H 0.089 0.911 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.192 -27.552 12.798 31.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.047 4.047 3 N -0.187 5.187 4 N -0.162 5.162 5 C -0.038 4.038 6 C 0.078 3.922 7 H 0.156 0.844 8 C -0.230 4.230 9 N -0.327 5.327 10 C -0.068 4.068 11 C 0.027 3.973 12 H 0.089 0.911 13 C -0.208 4.208 14 N -0.321 5.321 15 C -0.064 4.064 16 C 0.324 3.676 17 O -0.448 6.448 18 C -0.271 4.271 19 S 0.076 5.924 20 C -0.695 4.695 21 H 0.097 0.903 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.194 1.194 26 H -0.199 1.199 27 H -0.180 1.180 28 O -0.108 6.108 29 H 0.131 0.869 30 H 0.140 0.860 31 H 0.133 0.867 32 H 0.096 0.904 33 H 0.121 0.879 34 H 0.068 0.932 35 H 0.166 0.834 36 H 0.119 0.881 37 H 0.094 0.906 38 H 0.063 0.937 39 H 0.110 0.890 40 H 0.101 0.899 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.124 0.876 44 H 0.121 0.879 45 H 0.108 0.892 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.063 -25.276 13.264 29.406 hybrid contribution -1.122 -0.650 -0.811 1.529 sum -8.184 -25.925 12.453 29.903 Atomic orbital electron populations 1.20690 0.76509 1.07374 1.06715 1.29069 0.99422 0.78909 0.97323 1.74387 0.96758 1.27738 1.19843 1.74322 1.12570 1.11255 1.18060 1.28646 0.85953 0.91326 0.97839 1.19951 0.83035 0.95726 0.93474 0.84419 1.22455 1.02739 1.03227 0.94571 1.59969 1.21359 1.10701 1.40641 1.22463 0.93454 0.93309 0.97524 1.21276 0.92841 0.95651 0.87517 0.91126 1.22039 0.99301 0.97361 1.02118 1.47578 1.43779 1.06595 1.34113 1.21901 0.92900 0.97167 0.94434 1.19880 0.81315 0.82681 0.83738 1.90644 1.39423 1.63991 1.50692 1.23320 1.02851 1.00130 1.00815 1.85515 1.59225 1.01871 1.45746 1.23182 1.29428 0.98126 1.18804 0.90343 1.26147 0.97241 0.95294 1.00444 1.70195 1.38876 1.03764 1.41916 0.84953 0.77674 0.78258 0.77086 1.19440 1.19886 1.18048 1.84749 1.17324 1.38425 1.70340 0.86860 0.86043 0.86731 0.90419 0.87892 0.93179 0.83433 0.88097 0.90566 0.93664 0.89044 0.89904 0.92601 0.91681 0.87615 0.87885 0.89217 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.60 10.51 71.24 0.75 0.15 16 2 C 0.16 3.89 8.48 88.34 0.75 4.64 16 3 N -0.34 -11.46 12.22 -165.50 -2.02 -13.48 16 4 N -0.32 -11.06 12.22 -165.49 -2.02 -13.08 16 5 C 0.18 4.52 7.32 88.34 0.65 5.17 16 6 C 0.19 3.18 3.13 44.17 0.14 3.32 16 7 H 0.14 1.41 7.80 -2.39 -0.02 1.40 16 8 C -0.17 -2.19 9.14 71.98 0.66 -1.53 16 9 N -0.69 -14.70 5.95 -495.44 -2.95 -17.65 16 10 C 0.06 0.84 4.78 86.30 0.41 1.25 16 11 C 0.13 2.69 2.88 44.99 0.13 2.82 16 12 H 0.07 1.95 6.90 -2.39 -0.02 1.93 16 13 C -0.15 -2.05 9.17 71.98 0.66 -1.39 16 14 N -0.59 -16.01 2.48 -822.58 -2.04 -18.05 16 15 C 0.08 1.54 9.40 127.77 1.20 2.74 16 16 C 0.54 21.75 7.69 87.66 0.67 22.42 16 17 O -0.57 -27.94 15.19 -3.02 -0.05 -27.99 16 18 C -0.12 -5.35 4.71 71.24 0.34 -5.02 16 19 S -0.15 -9.02 20.57 -56.49 -1.16 -10.18 16 20 C -0.55 -33.27 9.50 67.95 0.65 -32.63 16 21 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 22 C 0.01 0.80 5.49 84.86 0.47 1.27 16 23 N -0.91 -58.49 13.22 21.65 0.29 -58.21 16 24 Si 1.00 45.67 29.55 68.60 2.03 47.69 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 27 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 28 O -0.23 -5.28 10.87 -3.66 -0.04 -5.32 16 29 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.12 0.57 8.14 -2.39 -0.02 0.56 16 31 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.10 0.78 7.45 -2.39 -0.02 0.76 16 34 H 0.05 0.90 8.13 -2.39 -0.02 0.88 16 35 H 0.35 9.27 8.47 -89.70 -0.76 8.51 16 36 H 0.10 0.95 7.75 -2.39 -0.02 0.93 16 37 H 0.08 0.63 7.44 -2.39 -0.02 0.61 16 38 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.08 0.76 6.66 -2.39 -0.02 0.75 16 41 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.06 1.39 6.44 -2.38 -0.02 1.37 16 43 H 0.11 1.24 6.43 -2.39 -0.02 1.23 16 44 H 0.10 4.16 7.40 -2.40 -0.02 4.14 16 45 H 0.09 3.91 8.11 -2.40 -0.02 3.89 16 46 H 0.27 16.10 8.31 -92.70 -0.77 15.33 16 Total: -1.00 -93.27 397.91 -0.27 -93.53 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.24 Total: 19.53 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: 7.47 Total: 3.20 kcal Atomic # 7 Polarization: -111.71 SS G_CDS: -8.75 Total: -120.47 kcal Atomic # 8 Polarization: -33.22 SS G_CDS: -0.09 Total: -33.31 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.16 Total: -10.18 kcal Total: -93.27 -0.27 -93.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753679849.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.164 kcal (2) G-P(sol) polarization free energy of solvation -93.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds