Wall clock time and date at job start Wed Apr 1 2020 00:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46860 * 2 1 4 4 C 1.52999 * 109.47384 * 120.00101 * 2 1 3 5 5 N 1.46507 * 109.46794 * 65.00083 * 4 2 1 6 6 C 1.35045 * 126.39405 * 269.99809 * 5 4 2 7 7 N 1.30503 * 108.69335 * 180.02562 * 6 5 4 8 8 C 1.34119 * 109.25897 * 0.02562 * 7 6 5 9 9 S 1.76202 * 125.99214 * 180.02562 * 8 7 6 10 10 O 1.42096 * 106.40184 * 203.56211 * 9 8 7 11 11 O 1.42108 * 106.39855 * 336.47812 * 9 8 7 12 12 N 1.65597 * 107.21850 * 90.01687 * 9 8 7 13 13 C 1.46966 * 120.59420 * 269.72135 * 12 9 8 14 14 C 1.53817 * 108.39521 * 124.76434 * 13 12 9 15 15 N 1.46961 * 108.58370 * 49.63475 * 14 13 12 16 16 C 1.36934 * 120.59576 * 124.62277 * 15 14 13 17 17 H 1.07996 * 120.00161 * 208.22864 * 16 15 14 18 18 C 1.38814 * 119.99829 * 28.22600 * 16 15 14 19 19 N 1.31624 * 120.00030 * 17.59451 * 18 16 15 20 20 Si 1.86797 * 120.00263 * 197.59169 * 18 16 15 21 21 H 1.48505 * 109.47021 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47385 * 119.99986 * 20 18 16 23 23 H 1.48505 * 109.46942 * 240.00186 * 20 18 16 24 24 C 1.46963 * 118.81173 * 304.65015 * 15 14 13 25 25 C 1.46968 * 120.59135 * 90.00612 * 12 9 8 26 26 C 1.34676 * 108.02467 * 359.97438 * 8 7 6 27 27 H 1.08999 * 109.46702 * 299.99521 * 1 2 3 28 28 H 1.09003 * 109.47150 * 59.99860 * 1 2 3 29 29 H 1.09006 * 109.46776 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46702 * 240.00479 * 2 1 3 31 31 H 1.08998 * 109.47242 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47398 * 300.00564 * 3 2 1 33 33 H 1.09000 * 109.47028 * 59.99925 * 3 2 1 34 34 H 1.09003 * 109.47154 * 305.00322 * 4 2 1 35 35 H 1.08995 * 109.47058 * 184.99780 * 4 2 1 36 36 H 1.08001 * 125.65442 * 0.02562 * 6 5 4 37 37 H 1.08996 * 109.60976 * 244.54087 * 13 12 9 38 38 H 1.08991 * 109.61101 * 5.05685 * 13 12 9 39 39 H 1.09001 * 109.73789 * 289.84169 * 14 13 12 40 40 H 1.08998 * 109.67280 * 169.39157 * 14 13 12 41 41 H 0.96995 * 120.00129 * 179.97438 * 19 18 16 42 42 H 1.08998 * 109.60889 * 295.48048 * 24 15 14 43 43 H 1.08994 * 109.75281 * 175.05056 * 24 15 14 44 44 H 1.08996 * 109.61160 * 354.94811 * 25 12 9 45 45 H 1.09005 * 109.61045 * 115.28504 * 25 12 9 46 46 H 1.07990 * 126.59199 * 180.02562 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6525 -2.1329 1.1904 6 6 0.5117 -2.6714 1.6725 7 7 0.5221 -3.9546 1.4354 8 6 1.6585 -4.2780 0.8006 9 16 2.1255 -5.8925 0.2714 10 8 3.5430 -5.8879 0.1723 11 8 1.4065 -6.8062 1.0884 12 7 1.5496 -6.0892 -1.2687 13 6 0.2105 -6.6486 -1.5008 14 6 -0.5865 -5.6571 -2.3654 15 7 0.2347 -5.2811 -3.5247 16 6 -0.2410 -5.4447 -4.7982 17 1 0.4463 -5.6141 -5.6138 18 6 -1.6068 -5.3929 -5.0409 19 7 -2.4135 -4.8551 -4.1507 20 14 -2.2999 -6.0863 -6.6310 21 1 -1.1928 -6.6299 -7.4580 22 1 -3.2643 -7.1715 -6.3189 23 1 -2.9935 -5.0080 -7.3803 24 6 1.5760 -4.7271 -3.2927 25 6 2.3710 -5.7134 -2.4281 26 6 2.3796 -3.1524 0.6375 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6055 -0.2618 2.1370 35 1 3.1264 -0.6443 1.2950 36 1 -0.2783 -2.1298 2.1714 37 1 0.2977 -7.6029 -2.0202 38 1 -0.2958 -6.7935 -0.5466 39 1 -0.8240 -4.7678 -1.7814 40 1 -1.5086 -6.1271 -2.7072 41 1 -3.3678 -4.8185 -4.3204 42 1 1.4925 -3.7716 -2.7748 43 1 2.0851 -4.5834 -4.2457 44 1 3.2917 -5.2406 -2.0863 45 1 2.6109 -6.6031 -3.0103 46 1 3.3456 -3.0699 0.1618 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174996607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:34 Heat of formation + Delta-G solvation = 13.133194 kcal Electronic energy + Delta-G solvation = -29457.103727 eV Core-core repulsion = 25510.778921 eV Total energy + Delta-G solvation = -3946.324806 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.151 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.24955 -37.50637 -36.98961 -36.85458 -35.45791 -33.75179 -32.85989 -31.05118 -30.08339 -29.87060 -27.53573 -26.86503 -26.34062 -23.22178 -22.80503 -22.38995 -21.61579 -20.60570 -19.90675 -18.55001 -18.01961 -17.33933 -16.17073 -15.84703 -15.74685 -15.50849 -15.37093 -14.76594 -14.45164 -14.08952 -13.94476 -13.82504 -13.65758 -13.57173 -13.33538 -13.26821 -12.88267 -12.74466 -12.42605 -11.99171 -11.93849 -11.75111 -11.73977 -11.40651 -11.28492 -11.27954 -11.18083 -11.08760 -10.80062 -10.67179 -10.37264 -10.18721 -10.08985 -9.91047 -9.87996 -9.64006 -8.93635 -8.67218 -8.42796 -6.65634 -5.80455 -3.24407 0.79480 1.65237 2.50828 2.71119 3.36245 3.44630 3.46149 3.49090 4.14326 4.16029 4.29172 4.41775 4.47966 4.50221 4.70366 4.79515 4.87782 4.97313 5.17417 5.23872 5.28242 5.34364 5.35595 5.44318 5.54930 5.58523 5.73282 5.84534 5.85196 5.94071 5.99769 6.02888 6.10250 6.22762 6.37946 6.46215 6.50354 6.70565 6.86607 6.92932 7.01718 7.37838 7.64663 7.77610 7.78837 8.41520 9.17741 9.81024 10.38518 11.26822 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.009930 B = 0.004470 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.086761 B = 6262.195284 C = 8013.213202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.114 4.114 3 C -0.144 4.144 4 C 0.103 3.897 5 N -0.451 5.451 6 C 0.185 3.815 7 N -0.410 5.410 8 C -0.552 4.552 9 S 2.721 3.279 10 O -0.968 6.968 11 O -0.951 6.951 12 N -0.982 5.982 13 C 0.097 3.903 14 C 0.160 3.840 15 N -0.588 5.588 16 C -0.253 4.253 17 H 0.067 0.933 18 C 0.003 3.997 19 N -0.901 5.901 20 Si 0.902 3.098 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.291 1.291 24 C 0.134 3.866 25 C 0.104 3.896 26 C 0.065 3.935 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.210 0.790 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.023 0.977 40 H 0.098 0.902 41 H 0.254 0.746 42 H 0.018 0.982 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.676 11.103 10.831 18.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.133 4.133 3 C -0.202 4.202 4 C -0.019 4.019 5 N -0.131 5.131 6 C -0.101 4.101 7 N -0.126 5.126 8 C -0.762 4.762 9 S 2.807 3.193 10 O -0.958 6.958 11 O -0.941 6.941 12 N -0.822 5.822 13 C -0.029 4.029 14 C 0.033 3.967 15 N -0.311 5.311 16 C -0.383 4.383 17 H 0.084 0.916 18 C -0.196 4.196 19 N -0.545 5.545 20 Si 0.732 3.268 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.219 1.219 24 C 0.005 3.995 25 C -0.023 4.023 26 C -0.076 4.076 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.226 0.774 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.041 0.959 40 H 0.116 0.884 41 H 0.064 0.936 42 H 0.036 0.964 43 H 0.082 0.918 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 9.347 10.127 11.538 17.974 hybrid contribution -0.254 1.231 -1.104 1.673 sum 9.093 11.358 10.434 17.904 Atomic orbital electron populations 1.21925 0.93954 1.02944 1.02349 1.21530 0.97487 0.96757 0.97563 1.21772 1.01067 0.94699 1.02655 1.22179 1.01948 0.77434 1.00342 1.45850 1.16519 1.08363 1.42364 1.25262 0.90876 0.90597 1.03364 1.70334 1.17710 1.11653 1.12857 1.33619 1.01849 1.22172 1.18585 1.01207 0.72842 0.72783 0.72446 1.93540 1.28460 1.87091 1.86748 1.93537 1.73839 1.59948 1.66812 1.57400 1.27083 1.76837 1.20926 1.22414 0.81126 0.98341 1.01009 1.21231 0.94173 0.94565 0.86762 1.43905 1.12659 1.71813 1.02686 1.19230 0.90765 1.43053 0.85203 0.91557 1.25046 0.97242 0.99556 0.97721 1.70038 1.03393 1.45308 1.35768 0.86239 0.78930 0.78552 0.83119 1.20241 1.21484 1.21854 1.21240 0.88055 0.93160 0.97003 1.22043 0.92517 1.00270 0.87479 1.22617 0.98838 0.86491 0.99620 0.92513 0.91764 0.91841 0.89983 0.92330 0.91652 0.92316 0.88428 0.88656 0.77373 0.91473 0.90057 0.95903 0.88429 0.93628 0.96441 0.91758 0.90560 0.91076 0.79425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.89 37.16 0.33 -1.07 16 2 C -0.11 -0.88 3.13 -90.62 -0.28 -1.16 16 3 C -0.14 -0.82 9.19 37.16 0.34 -0.48 16 4 C 0.10 0.71 5.58 -4.04 -0.02 0.69 16 5 N -0.45 -5.00 2.57 -118.57 -0.31 -5.31 16 6 C 0.18 2.38 10.86 -90.37 -0.98 1.40 16 7 N -0.41 -7.04 11.25 -13.86 -0.16 -7.20 16 8 C -0.55 -9.17 7.13 -17.81 -0.13 -9.30 16 9 S 2.72 48.86 5.85 -107.50 -0.63 48.23 16 10 O -0.97 -17.49 16.53 -57.17 -0.95 -18.43 16 11 O -0.95 -19.72 16.70 -57.17 -0.95 -20.68 16 12 N -0.98 -18.16 3.26 -113.00 -0.37 -18.53 16 13 C 0.10 1.96 6.58 -3.36 -0.02 1.94 16 14 C 0.16 3.80 5.54 -3.37 -0.02 3.78 16 15 N -0.59 -14.32 2.97 -171.77 -0.51 -14.83 16 16 C -0.25 -6.73 9.58 -15.06 -0.14 -6.88 16 17 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 18 C 0.00 0.08 4.90 -17.43 -0.09 0.00 16 19 N -0.90 -25.66 11.20 55.49 0.62 -25.04 16 20 Si 0.90 21.31 29.59 -169.99 -5.03 16.28 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 C 0.13 2.67 6.67 -3.60 -0.02 2.64 16 25 C 0.10 1.80 6.55 -3.59 -0.02 1.77 16 26 C 0.07 0.87 11.31 -16.56 -0.19 0.68 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.74 6.50 -51.93 -0.34 0.40 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.21 1.89 8.06 -52.49 -0.42 1.46 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.08 1.59 7.08 -51.93 -0.37 1.22 16 39 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.10 2.57 5.98 -51.93 -0.31 2.26 16 41 H 0.25 6.99 8.31 -40.82 -0.34 6.66 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 1.21 7.94 -51.93 -0.41 0.80 16 44 H 0.08 1.12 7.09 -51.93 -0.37 0.75 16 45 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 46 H 0.19 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 381.75 15.07 5.75 5.75 Total: -1.00 -35.20 381.75 -11.03 -46.24 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -7.26 Total: -0.50 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -1.25 Total: -5.98 kcal Atomic # 7 Polarization: -70.19 SS G_CDS: -0.72 Total: -70.91 kcal Atomic # 8 Polarization: -37.21 SS G_CDS: -1.90 Total: -39.11 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Atomic # 16 Polarization: 48.86 SS G_CDS: -0.63 Total: 48.23 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.20 -11.03 -46.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174996607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.368 kcal (2) G-P(sol) polarization free energy of solvation -35.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds