Wall clock time and date at job start Wed Apr 1 2020 00:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46860 * 2 1 4 4 C 1.52999 * 109.47384 * 120.00101 * 2 1 3 5 5 N 1.46507 * 109.46794 * 65.00083 * 4 2 1 6 6 C 1.35045 * 126.39405 * 269.99809 * 5 4 2 7 7 N 1.30503 * 108.69335 * 180.02562 * 6 5 4 8 8 C 1.34119 * 109.25897 * 0.02562 * 7 6 5 9 9 S 1.76202 * 125.99214 * 180.02562 * 8 7 6 10 10 O 1.42096 * 106.40184 * 203.56211 * 9 8 7 11 11 O 1.42108 * 106.39855 * 336.47812 * 9 8 7 12 12 N 1.65597 * 107.21850 * 90.01687 * 9 8 7 13 13 C 1.46966 * 120.59420 * 269.72135 * 12 9 8 14 14 C 1.53817 * 108.39521 * 124.76434 * 13 12 9 15 15 N 1.46961 * 108.58370 * 49.63475 * 14 13 12 16 16 C 1.36934 * 120.59576 * 124.62277 * 15 14 13 17 17 H 1.07996 * 120.00161 * 208.22864 * 16 15 14 18 18 C 1.38814 * 119.99829 * 28.22600 * 16 15 14 19 19 N 1.31624 * 120.00030 * 17.59451 * 18 16 15 20 20 Si 1.86797 * 120.00263 * 197.59169 * 18 16 15 21 21 H 1.48505 * 109.47021 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47385 * 119.99986 * 20 18 16 23 23 H 1.48505 * 109.46942 * 240.00186 * 20 18 16 24 24 C 1.46963 * 118.81173 * 304.65015 * 15 14 13 25 25 C 1.46968 * 120.59135 * 90.00612 * 12 9 8 26 26 C 1.34676 * 108.02467 * 359.97438 * 8 7 6 27 27 H 1.08999 * 109.46702 * 299.99521 * 1 2 3 28 28 H 1.09003 * 109.47150 * 59.99860 * 1 2 3 29 29 H 1.09006 * 109.46776 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46702 * 240.00479 * 2 1 3 31 31 H 1.08998 * 109.47242 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47398 * 300.00564 * 3 2 1 33 33 H 1.09000 * 109.47028 * 59.99925 * 3 2 1 34 34 H 1.09003 * 109.47154 * 305.00322 * 4 2 1 35 35 H 1.08995 * 109.47058 * 184.99780 * 4 2 1 36 36 H 1.08001 * 125.65442 * 0.02562 * 6 5 4 37 37 H 1.08996 * 109.60976 * 244.54087 * 13 12 9 38 38 H 1.08991 * 109.61101 * 5.05685 * 13 12 9 39 39 H 1.09001 * 109.73789 * 289.84169 * 14 13 12 40 40 H 1.08998 * 109.67280 * 169.39157 * 14 13 12 41 41 H 0.96995 * 120.00129 * 179.97438 * 19 18 16 42 42 H 1.08998 * 109.60889 * 295.48048 * 24 15 14 43 43 H 1.08994 * 109.75281 * 175.05056 * 24 15 14 44 44 H 1.08996 * 109.61160 * 354.94811 * 25 12 9 45 45 H 1.09005 * 109.61045 * 115.28504 * 25 12 9 46 46 H 1.07990 * 126.59199 * 180.02562 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6525 -2.1329 1.1904 6 6 0.5117 -2.6714 1.6725 7 7 0.5221 -3.9546 1.4354 8 6 1.6585 -4.2780 0.8006 9 16 2.1255 -5.8925 0.2714 10 8 3.5430 -5.8879 0.1723 11 8 1.4065 -6.8062 1.0884 12 7 1.5496 -6.0892 -1.2687 13 6 0.2105 -6.6486 -1.5008 14 6 -0.5865 -5.6571 -2.3654 15 7 0.2347 -5.2811 -3.5247 16 6 -0.2410 -5.4447 -4.7982 17 1 0.4463 -5.6141 -5.6138 18 6 -1.6068 -5.3929 -5.0409 19 7 -2.4135 -4.8551 -4.1507 20 14 -2.2999 -6.0863 -6.6310 21 1 -1.1928 -6.6299 -7.4580 22 1 -3.2643 -7.1715 -6.3189 23 1 -2.9935 -5.0080 -7.3803 24 6 1.5760 -4.7271 -3.2927 25 6 2.3710 -5.7134 -2.4281 26 6 2.3796 -3.1524 0.6375 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6055 -0.2618 2.1370 35 1 3.1264 -0.6443 1.2950 36 1 -0.2783 -2.1298 2.1714 37 1 0.2977 -7.6029 -2.0202 38 1 -0.2958 -6.7935 -0.5466 39 1 -0.8240 -4.7678 -1.7814 40 1 -1.5086 -6.1271 -2.7072 41 1 -3.3678 -4.8185 -4.3204 42 1 1.4925 -3.7716 -2.7748 43 1 2.0851 -4.5834 -4.2457 44 1 3.2917 -5.2406 -2.0863 45 1 2.6109 -6.6031 -3.0103 46 1 3.3456 -3.0699 0.1618 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174996607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:33 Heat of formation + Delta-G solvation = -10.555981 kcal Electronic energy + Delta-G solvation = -29458.130967 eV Core-core repulsion = 25510.778921 eV Total energy + Delta-G solvation = -3947.352046 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.151 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.24110 -39.18867 -38.32687 -37.65867 -36.93703 -35.57697 -33.73265 -32.91794 -31.81199 -30.93195 -28.20000 -28.17276 -27.52758 -25.03481 -24.48417 -23.51432 -22.55262 -21.58342 -21.27163 -19.97453 -19.27666 -18.78210 -17.90084 -17.05478 -16.90885 -16.72811 -16.57997 -16.02590 -15.63324 -15.46759 -15.38312 -15.19164 -15.07053 -14.94825 -14.66810 -14.59709 -13.93155 -13.61518 -13.53021 -13.22557 -13.20251 -12.99073 -12.96709 -12.91836 -12.67709 -12.63541 -12.45711 -12.41495 -12.08659 -12.01985 -11.99910 -11.80510 -11.77496 -11.45233 -11.15739 -10.78342 -10.59409 -10.20373 -9.95315 -8.62611 -7.84943 -5.32074 -0.58437 0.61154 1.47690 1.51001 1.55443 1.60526 1.72830 2.13192 2.52811 2.78450 3.16276 3.29450 3.63679 3.65163 3.69162 3.75676 3.84710 3.87716 4.08259 4.17501 4.25051 4.31889 4.43015 4.49266 4.57977 4.59254 4.66973 4.74314 4.75709 4.87728 4.89746 4.93480 5.03814 5.10954 5.18624 5.20889 5.24957 5.30258 5.31592 5.36644 5.61492 5.65953 5.77179 6.06483 6.39262 6.75344 7.14255 7.84717 8.38522 9.20296 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.009930 B = 0.004470 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.086761 B = 6262.195284 C = 8013.213202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.110 4.110 3 C -0.138 4.138 4 C 0.098 3.902 5 N -0.441 5.441 6 C 0.191 3.809 7 N -0.465 5.465 8 C -0.587 4.587 9 S 2.737 3.263 10 O -0.970 6.970 11 O -0.986 6.986 12 N -0.987 5.987 13 C 0.111 3.889 14 C 0.173 3.827 15 N -0.605 5.605 16 C -0.259 4.259 17 H 0.073 0.927 18 C -0.049 4.049 19 N -0.935 5.935 20 Si 0.965 3.035 21 H -0.265 1.265 22 H -0.293 1.293 23 H -0.295 1.295 24 C 0.131 3.869 25 C 0.108 3.892 26 C 0.078 3.922 27 H 0.080 0.920 28 H 0.050 0.950 29 H 0.032 0.968 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.241 0.759 37 H 0.072 0.928 38 H 0.082 0.918 39 H -0.005 1.005 40 H 0.067 0.933 41 H 0.249 0.751 42 H 0.015 0.985 43 H 0.076 0.924 44 H 0.110 0.890 45 H 0.078 0.922 46 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.826 12.758 11.211 20.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.129 4.129 3 C -0.196 4.196 4 C -0.022 4.022 5 N -0.120 5.120 6 C -0.096 4.096 7 N -0.182 5.182 8 C -0.800 4.800 9 S 2.827 3.173 10 O -0.960 6.960 11 O -0.976 6.976 12 N -0.825 5.825 13 C -0.016 4.016 14 C 0.045 3.955 15 N -0.328 5.328 16 C -0.389 4.389 17 H 0.090 0.910 18 C -0.244 4.244 19 N -0.581 5.581 20 Si 0.794 3.206 21 H -0.189 1.189 22 H -0.219 1.219 23 H -0.222 1.222 24 C 0.004 3.996 25 C -0.018 4.018 26 C -0.066 4.066 27 H 0.099 0.901 28 H 0.069 0.931 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.257 0.743 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.013 0.987 40 H 0.085 0.915 41 H 0.058 0.942 42 H 0.033 0.967 43 H 0.094 0.906 44 H 0.128 0.872 45 H 0.096 0.904 46 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 11.554 11.767 11.902 20.337 hybrid contribution -0.893 0.883 -1.181 1.724 sum 10.660 12.650 10.721 19.713 Atomic orbital electron populations 1.21928 0.95335 1.01017 1.02932 1.21475 0.96215 0.98111 0.97113 1.21729 1.01873 0.92954 1.03055 1.22580 1.03859 0.74770 1.00956 1.46088 1.15472 1.09659 1.40781 1.25838 0.91767 0.89738 1.02219 1.70232 1.18825 1.14234 1.14885 1.33140 1.03264 1.22279 1.21269 1.00449 0.72362 0.72877 0.71643 1.93522 1.28278 1.87505 1.86675 1.93486 1.74547 1.62069 1.67544 1.57393 1.26208 1.77166 1.21780 1.22076 0.81796 0.97381 1.00304 1.20921 0.93803 0.93910 0.86841 1.44142 1.14102 1.72474 1.02097 1.19578 0.91077 1.41953 0.86245 0.90977 1.25773 0.97671 1.00301 1.00700 1.70191 1.03228 1.46991 1.37705 0.85242 0.78197 0.77401 0.79772 1.18894 1.21948 1.22203 1.21408 0.86295 0.93623 0.98264 1.22075 0.92866 1.00032 0.86848 1.23071 0.99370 0.85993 0.98166 0.90125 0.93086 0.94898 0.92267 0.90987 0.92529 0.90693 0.85517 0.86010 0.74306 0.90929 0.89957 0.98667 0.91496 0.94181 0.96654 0.90550 0.87245 0.90378 0.76523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 8.89 71.98 0.64 -1.99 16 2 C -0.11 -1.43 3.13 -10.79 -0.03 -1.46 16 3 C -0.14 -1.15 9.19 71.98 0.66 -0.48 16 4 C 0.10 1.00 5.58 86.38 0.48 1.48 16 5 N -0.44 -8.74 2.57 -529.05 -1.36 -10.11 16 6 C 0.19 4.68 10.86 180.26 1.96 6.64 16 7 N -0.46 -16.03 11.25 -197.77 -2.22 -18.25 16 8 C -0.59 -19.23 7.13 83.53 0.60 -18.63 16 9 S 2.74 97.29 5.85 -56.49 -0.33 96.96 16 10 O -0.97 -33.45 16.53 -128.00 -2.12 -35.57 16 11 O -0.99 -41.59 16.70 -128.00 -2.14 -43.73 16 12 N -0.99 -36.14 3.26 -511.42 -1.67 -37.81 16 13 C 0.11 4.60 6.58 86.57 0.57 5.17 16 14 C 0.17 8.53 5.54 86.57 0.48 9.01 16 15 N -0.60 -29.79 2.97 -697.36 -2.07 -31.86 16 16 C -0.26 -13.82 9.58 84.03 0.80 -13.01 16 17 H 0.07 3.71 7.89 -2.91 -0.02 3.68 16 18 C -0.05 -2.70 4.90 84.86 0.42 -2.28 16 19 N -0.93 -55.04 11.20 21.65 0.24 -54.80 16 20 Si 0.97 44.36 29.59 68.60 2.03 46.39 16 21 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 22 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 24 C 0.13 5.12 6.67 86.42 0.58 5.70 16 25 C 0.11 3.56 6.55 86.42 0.57 4.13 16 26 C 0.08 1.90 11.31 83.09 0.94 2.84 16 27 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.03 0.75 6.50 -2.38 -0.02 0.74 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.24 3.89 8.06 -2.91 -0.02 3.86 16 37 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 38 H 0.08 3.36 7.08 -2.39 -0.02 3.34 16 39 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 40 H 0.07 3.71 5.98 -2.39 -0.01 3.69 16 41 H 0.25 14.24 8.31 -92.71 -0.77 13.46 16 42 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.08 2.77 7.94 -2.39 -0.02 2.75 16 44 H 0.11 2.89 7.09 -2.39 -0.02 2.87 16 45 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 46 H 0.22 3.77 8.06 -2.92 -0.02 3.75 16 Total: -1.00 -78.79 381.75 -0.02 -78.80 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 0.96 Total: 12.87 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: 8.65 Total: -2.91 kcal Atomic # 7 Polarization: -145.75 SS G_CDS: -7.08 Total: -152.83 kcal Atomic # 8 Polarization: -75.04 SS G_CDS: -4.25 Total: -79.29 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 16 Polarization: 97.29 SS G_CDS: -0.33 Total: 96.96 kcal Total: -78.79 -0.02 -78.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174996607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.246 kcal (2) G-P(sol) polarization free energy of solvation -78.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds