Wall clock time and date at job start Wed Apr 1 2020 02:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46636 * 2 1 4 4 C 1.50697 * 109.47589 * 120.00281 * 2 1 3 5 5 H 1.07998 * 119.99670 * 119.99650 * 4 2 1 6 6 C 1.37872 * 119.99936 * 300.00650 * 4 2 1 7 7 N 1.31515 * 120.00074 * 179.97438 * 6 4 2 8 8 Si 1.86802 * 120.00030 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.47090 * 90.00505 * 8 6 4 10 10 H 1.48503 * 109.47018 * 210.00086 * 8 6 4 11 11 H 1.48497 * 109.47145 * 330.00161 * 8 6 4 12 12 N 1.46499 * 109.47327 * 240.00648 * 2 1 3 13 13 C 1.46500 * 120.00138 * 300.00124 * 12 2 1 14 14 C 1.34777 * 120.00237 * 119.99384 * 12 2 1 15 15 O 1.21577 * 119.99916 * 3.99821 * 14 12 2 16 16 C 1.47719 * 119.99997 * 183.99404 * 14 12 2 17 17 C 1.40925 * 126.24634 * 173.14992 * 16 14 12 18 18 C 1.37067 * 105.47621 * 180.02562 * 17 16 14 19 19 C 1.47128 * 126.66052 * 179.97438 * 18 17 16 20 20 N 1.34778 * 120.00251 * 189.61929 * 19 18 17 21 21 O 1.21634 * 120.00054 * 9.62309 * 19 18 17 22 22 N 1.37020 * 106.68183 * 0.02562 * 18 17 16 23 23 C 1.39963 * 125.08457 * 180.02562 * 22 18 17 24 24 C 1.38900 * 120.06979 * 233.11108 * 23 22 18 25 25 C 1.38100 * 119.92121 * 179.72781 * 24 23 22 26 26 C 1.38291 * 120.07690 * 0.57008 * 25 24 23 27 27 C 1.38288 * 120.14205 * 359.70721 * 26 25 24 28 28 C 1.38101 * 120.07678 * 359.97438 * 27 26 25 29 29 N 1.28462 * 109.82480 * 0.02562 * 22 18 17 30 30 H 1.08998 * 109.46893 * 299.99440 * 1 2 3 31 31 H 1.09005 * 109.47157 * 59.99672 * 1 2 3 32 32 H 1.08998 * 109.46915 * 179.97438 * 1 2 3 33 33 H 0.97003 * 120.00239 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.47003 * 264.02983 * 13 12 2 35 35 H 1.09001 * 109.46710 * 24.02675 * 13 12 2 36 36 H 1.09000 * 109.47553 * 144.02861 * 13 12 2 37 37 H 1.07994 * 127.26462 * 359.97438 * 17 16 14 38 38 H 0.97004 * 119.99947 * 7.28888 * 20 19 18 39 39 H 0.97000 * 120.00267 * 187.29106 * 20 19 18 40 40 H 1.08003 * 120.03329 * 0.02876 * 24 23 22 41 41 H 1.08005 * 119.96221 * 180.31968 * 25 24 23 42 42 H 1.07995 * 119.92968 * 179.72081 * 26 25 24 43 43 H 1.07997 * 119.96295 * 180.02562 * 27 26 25 44 44 H 1.07997 * 120.04172 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1311 6 6 1.6993 -0.2395 2.4826 7 7 2.1374 -0.8598 3.5564 8 14 0.6258 1.2795 2.6542 9 1 -0.8020 0.8740 2.6994 10 1 0.9771 1.9950 3.9072 11 1 0.8489 2.1771 1.4924 12 7 2.0184 -0.6905 -1.1962 13 6 1.6645 -2.0930 -1.4283 14 6 2.7932 -0.0354 -2.0834 15 8 3.1469 1.1053 -1.8557 16 6 3.2127 -0.7033 -3.3323 17 6 3.9024 -0.1054 -4.4060 18 6 4.0720 -1.1016 -5.3320 19 6 4.7392 -0.9828 -6.6379 20 7 4.6639 -1.9925 -7.5275 21 8 5.3589 0.0266 -6.9146 22 7 3.4986 -2.2294 -4.8058 23 6 3.4541 -3.4782 -5.4362 24 6 2.2410 -4.1369 -5.5907 25 6 2.1998 -5.3664 -6.2182 26 6 3.3659 -5.9473 -6.6820 27 6 4.5760 -5.2967 -6.5246 28 6 4.6235 -4.0640 -5.9039 29 7 3.0081 -1.9690 -3.6475 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.9027 -0.5287 4.4375 34 1 2.4673 -2.7350 -1.0658 35 1 0.7429 -2.3280 -0.8958 36 1 1.5200 -2.2595 -2.4957 37 1 4.2278 0.9215 -4.4833 38 1 4.0851 -2.7510 -7.3524 39 1 5.1884 -1.9607 -8.3428 40 1 1.3304 -3.6858 -5.2249 41 1 1.2562 -5.8768 -6.3433 42 1 3.3315 -6.9109 -7.1683 43 1 5.4849 -5.7528 -6.8883 44 1 5.5688 -3.5562 -5.7816 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342448310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:04:43 Heat of formation + Delta-G solvation = 74.220017 kcal Electronic energy + Delta-G solvation = -29695.795001 eV Core-core repulsion = 25616.675167 eV Total energy + Delta-G solvation = -4079.119834 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.16609 -39.93534 -39.35148 -38.83795 -35.55103 -34.67276 -33.51959 -32.73193 -31.67646 -31.18413 -30.45917 -29.48029 -26.25517 -25.19788 -24.72621 -24.06318 -23.42572 -22.37176 -20.94975 -20.50786 -19.16433 -18.34868 -17.67680 -17.17953 -16.87387 -16.62276 -16.40619 -15.66240 -15.50349 -15.26331 -15.09847 -14.73960 -14.52671 -14.21063 -14.11243 -13.98625 -13.70313 -13.13601 -13.02283 -12.91668 -12.32213 -12.27955 -12.19305 -12.00794 -11.79472 -11.72236 -11.14246 -10.96839 -10.67602 -10.36529 -10.20878 -10.12087 -10.04695 -9.65924 -9.61289 -9.44193 -9.41671 -9.21516 -8.95536 -8.60787 -7.71135 -6.11338 -4.11993 0.23588 0.64726 1.07583 1.80798 1.95598 2.83817 2.98859 3.00875 3.25772 3.39716 3.42386 3.70450 3.79512 4.15059 4.20873 4.29706 4.38004 4.46055 4.50334 4.68571 4.81500 4.88229 5.08080 5.21119 5.31276 5.33142 5.52116 5.63074 5.67697 5.81316 5.92242 6.02418 6.12984 6.20139 6.26896 6.31261 6.32715 6.41302 6.50512 6.60510 6.84076 6.86321 7.12430 7.33714 7.58986 7.64491 7.78658 8.17350 8.47521 8.81444 8.91872 9.49090 11.01445 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.016200 B = 0.003024 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.942520 B = 9257.481643 C =10360.550642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.229 3.771 3 H 0.065 0.935 4 C -0.526 4.526 5 H 0.079 0.921 6 C 0.076 3.924 7 N -0.895 5.895 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.569 5.569 13 C 0.085 3.915 14 C 0.588 3.412 15 O -0.538 6.538 16 C 0.003 3.997 17 C -0.085 4.085 18 C -0.054 4.054 19 C 0.601 3.399 20 N -0.856 5.856 21 O -0.519 6.519 22 N -0.234 5.234 23 C 0.111 3.889 24 C -0.090 4.090 25 C -0.104 4.104 26 C -0.103 4.103 27 C -0.106 4.106 28 C -0.111 4.111 29 N -0.216 5.216 30 H 0.052 0.948 31 H 0.034 0.966 32 H 0.057 0.943 33 H 0.266 0.734 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.179 0.821 38 H 0.401 0.599 39 H 0.407 0.593 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.135 0.865 43 H 0.139 0.861 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.511 -12.923 -25.850 28.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.128 3.872 3 H 0.083 0.917 4 C -0.564 4.564 5 H 0.097 0.903 6 C -0.127 4.127 7 N -0.533 5.533 8 Si 0.712 3.288 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.298 5.298 13 C -0.059 4.059 14 C 0.372 3.628 15 O -0.415 6.415 16 C -0.157 4.157 17 C -0.114 4.114 18 C -0.176 4.176 19 C 0.385 3.615 20 N -0.425 5.425 21 O -0.393 6.393 22 N -0.022 5.022 23 C 0.022 3.978 24 C -0.109 4.109 25 C -0.123 4.123 26 C -0.121 4.121 27 C -0.125 4.125 28 C -0.131 4.131 29 N -0.052 5.052 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.196 0.804 38 H 0.235 0.765 39 H 0.239 0.761 40 H 0.157 0.843 41 H 0.156 0.844 42 H 0.152 0.848 43 H 0.157 0.843 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.584 -12.612 -25.160 28.150 hybrid contribution -0.318 0.836 -0.084 0.898 sum 0.266 -11.776 -25.244 27.856 Atomic orbital electron populations 1.22472 0.98886 1.01209 0.99387 1.19379 0.90061 0.95243 0.82562 0.91741 1.21143 1.32677 1.14241 0.88360 0.90269 1.24858 0.95694 0.96575 0.95581 1.69876 1.45225 1.40206 0.97949 0.86924 0.80374 0.83889 0.77577 1.20401 1.22120 1.18677 1.47759 1.47846 1.12230 1.21968 1.21901 1.01137 0.81725 1.01113 1.16838 0.79542 0.85307 0.81147 1.90774 1.56444 1.17699 1.76536 1.22385 1.04835 0.90000 0.98460 1.21991 0.98448 1.00497 0.90434 1.21367 1.09529 0.88277 0.98461 1.16852 0.79330 0.83184 0.82163 1.44318 1.49703 1.24137 1.24385 1.90905 1.41917 1.28898 1.77543 1.43118 1.40011 1.06857 1.12167 1.17570 0.95211 0.84723 1.00344 1.21259 0.96647 0.95438 0.97583 1.21187 0.99399 0.94383 0.97310 1.21438 0.92267 1.00089 0.98327 1.21111 0.98926 0.93624 0.98840 1.21262 0.96959 0.95885 0.98971 1.74091 1.15835 1.17677 0.97600 0.92987 0.94684 0.92420 0.92448 0.92956 0.90967 0.90603 0.80385 0.76476 0.76146 0.84276 0.84352 0.84752 0.84348 0.84548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.51 8.66 37.16 0.32 -3.19 16 2 C 0.23 5.66 2.22 -69.08 -0.15 5.50 16 3 H 0.06 1.75 5.96 -51.93 -0.31 1.44 16 4 C -0.53 -14.84 8.95 -34.44 -0.31 -15.15 16 5 H 0.08 2.42 7.89 -52.49 -0.41 2.01 16 6 C 0.08 2.18 5.45 -17.82 -0.10 2.09 16 7 N -0.90 -27.25 13.96 55.43 0.77 -26.47 16 8 Si 0.88 21.99 24.37 -169.99 -4.14 17.85 16 9 H -0.28 -6.57 6.87 56.52 0.39 -6.18 16 10 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 11 H -0.26 -6.43 6.53 56.52 0.37 -6.06 16 12 N -0.57 -12.41 2.75 -176.42 -0.49 -12.90 16 13 C 0.08 1.54 8.84 59.85 0.53 2.07 16 14 C 0.59 12.73 7.68 -12.39 -0.10 12.64 16 15 O -0.54 -13.27 16.25 5.30 0.09 -13.18 16 16 C 0.00 0.04 6.80 -82.90 -0.56 -0.52 16 17 C -0.09 -1.36 10.57 -38.99 -0.41 -1.77 16 18 C -0.05 -0.73 6.75 -82.37 -0.56 -1.29 16 19 C 0.60 7.27 7.79 -12.65 -0.10 7.17 16 20 N -0.86 -6.37 7.58 30.36 0.23 -6.14 16 21 O -0.52 -8.00 17.75 5.25 0.09 -7.91 16 22 N -0.23 -2.97 3.40 -7.29 -0.02 -2.99 16 23 C 0.11 1.02 4.62 -83.65 -0.39 0.63 16 24 C -0.09 -0.67 9.89 -39.39 -0.39 -1.06 16 25 C -0.10 -0.50 10.04 -39.61 -0.40 -0.90 16 26 C -0.10 -0.39 10.04 -39.54 -0.40 -0.79 16 27 C -0.11 -0.46 10.04 -39.61 -0.40 -0.86 16 28 C -0.11 -0.77 6.64 -39.39 -0.26 -1.03 16 29 N -0.22 -3.33 8.32 33.34 0.28 -3.06 16 30 H 0.05 1.17 3.27 -51.93 -0.17 1.00 16 31 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 1.16 6.67 -51.93 -0.35 0.82 16 33 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 1.27 6.44 -51.93 -0.33 0.94 16 36 H 0.08 1.20 5.32 -51.93 -0.28 0.92 16 37 H 0.18 2.76 8.06 -52.49 -0.42 2.34 16 38 H 0.40 2.51 4.66 -40.82 -0.19 2.32 16 39 H 0.41 2.15 8.93 -40.82 -0.36 1.78 16 40 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 41 H 0.14 0.38 8.06 -52.48 -0.42 -0.04 16 42 H 0.13 0.20 8.06 -52.49 -0.42 -0.22 16 43 H 0.14 0.30 8.06 -52.49 -0.42 -0.13 16 44 H 0.14 0.99 7.71 -52.49 -0.40 0.59 16 LS Contribution 361.60 15.07 5.45 5.45 Total: -1.00 -36.19 361.60 -6.36 -42.55 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -4.95 Total: 3.26 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -3.66 Total: 3.54 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.77 Total: -51.55 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: 0.18 Total: -21.09 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.14 Total: 17.85 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.19 -6.36 -42.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342448310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.770 kcal (2) G-P(sol) polarization free energy of solvation -36.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds