Wall clock time and date at job start Wed Apr 1 2020 02:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46402 * 2 1 4 4 C 1.50699 * 109.47044 * 120.00211 * 2 1 3 5 5 H 1.07992 * 119.99978 * 120.00350 * 4 2 1 6 6 C 1.37876 * 119.99781 * 299.99667 * 4 2 1 7 7 N 1.31514 * 119.99924 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00053 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46972 * 60.00398 * 8 6 4 10 10 H 1.48499 * 109.47464 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46986 * 300.00599 * 8 6 4 12 12 N 1.46502 * 109.47134 * 240.00097 * 2 1 3 13 13 C 1.46499 * 120.00062 * 300.00045 * 12 2 1 14 14 S 1.65606 * 119.99935 * 119.99548 * 12 2 1 15 15 O 1.42098 * 106.40010 * 23.54321 * 14 12 2 16 16 O 1.42094 * 106.39890 * 156.45686 * 14 12 2 17 17 N 1.65596 * 107.21969 * 270.00204 * 14 12 2 18 18 C 1.47424 * 125.64778 * 269.69175 * 17 14 12 19 19 C 1.55121 * 104.72347 * 155.81853 * 18 17 14 20 20 C 1.55160 * 101.48767 * 37.29392 * 19 18 17 21 21 H 1.09001 * 110.87025 * 82.76652 * 20 19 18 22 22 C 1.50697 * 110.72299 * 205.96868 * 20 19 18 23 23 N 1.30497 * 125.64820 * 53.21272 * 22 20 19 24 24 C 1.34136 * 109.25764 * 179.89383 * 23 22 20 25 25 C 1.34672 * 108.01428 * 0.37267 * 24 23 22 26 26 N 1.35040 * 125.65029 * 233.52474 * 22 20 19 27 27 C 1.46497 * 126.39959 * 359.93901 * 26 22 20 28 28 C 1.47020 * 125.65103 * 90.00236 * 17 14 12 29 29 H 1.09000 * 109.46982 * 299.99790 * 1 2 3 30 30 H 1.09002 * 109.47164 * 60.00347 * 1 2 3 31 31 H 1.09003 * 109.46815 * 179.97438 * 1 2 3 32 32 H 0.97005 * 119.99751 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.47391 * 89.99876 * 13 12 2 34 34 H 1.09001 * 109.46813 * 329.99933 * 13 12 2 35 35 H 1.09004 * 109.47041 * 210.00060 * 13 12 2 36 36 H 1.09002 * 110.36286 * 274.74869 * 18 17 14 37 37 H 1.09002 * 110.36783 * 37.06627 * 18 17 14 38 38 H 1.08996 * 111.19458 * 279.19126 * 19 18 17 39 39 H 1.09005 * 110.94088 * 155.29076 * 19 18 17 40 40 H 1.07991 * 125.99181 * 180.11855 * 24 23 22 41 41 H 1.08003 * 126.58545 * 179.81853 * 25 24 23 42 42 H 1.08998 * 109.47068 * 90.00284 * 27 26 22 43 43 H 1.09005 * 109.47362 * 210.00410 * 27 26 22 44 44 H 1.09003 * 109.47189 * 330.00610 * 27 26 22 45 45 H 1.09000 * 109.88048 * 300.43777 * 28 17 14 46 46 H 1.09004 * 109.88513 * 61.60099 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8297 2.6033 8 14 2.3225 -1.1195 4.0079 9 1 3.8075 -1.1189 4.0077 10 1 1.8270 -0.4199 5.2204 11 1 1.8281 -2.5198 4.0081 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4281 14 16 2.9704 0.1143 -2.2863 15 8 3.5794 1.1830 -1.5749 16 8 3.7119 -0.8787 -2.9814 17 7 1.9607 0.8091 -3.3998 18 6 1.5054 0.1839 -4.6548 19 6 0.1740 0.9041 -4.9938 20 6 0.4870 2.3574 -4.5494 21 1 1.0311 2.8928 -5.3275 22 6 -0.7798 3.0890 -4.1876 23 7 -1.6802 2.6763 -3.3380 24 6 -2.6677 3.5812 -3.2655 25 6 -2.3717 4.5891 -4.1082 26 7 -1.1742 4.2774 -4.6934 27 6 -0.4546 5.0828 -5.6832 28 6 1.3749 2.1542 -3.3037 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.7089 1.1613 3.4844 33 1 0.7376 -2.1444 -1.9994 34 1 1.5296 -2.5968 -0.4709 35 1 2.4630 -2.5818 -1.9864 36 1 2.2380 0.3438 -5.4459 37 1 1.3325 -0.8821 -4.5067 38 1 -0.6551 0.4902 -4.4200 39 1 -0.0324 0.8584 -6.0631 40 1 -3.5479 3.5116 -2.6437 41 1 -2.9649 5.4738 -4.2872 42 1 -0.7724 4.7958 -6.6855 43 1 -0.6732 6.1383 -5.5210 44 1 0.6172 4.9136 -5.5794 45 1 0.7696 2.2311 -2.4005 46 1 2.1668 2.9031 -3.2867 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367166319.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:28 Heat of formation + Delta-G solvation = 1.163216 kcal Electronic energy + Delta-G solvation = -29576.085871 eV Core-core repulsion = 25629.242008 eV Total energy + Delta-G solvation = -3946.843863 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.151 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.18119 -38.29376 -36.63216 -36.02660 -35.17110 -34.13238 -32.48559 -31.95018 -29.52587 -28.96182 -28.02755 -27.06912 -25.38670 -25.06928 -22.88172 -22.08773 -21.24412 -20.57561 -19.37200 -18.42622 -17.49420 -17.28234 -16.74644 -16.22074 -15.89574 -15.67858 -15.21346 -14.57096 -14.35340 -14.05695 -13.65683 -13.45295 -13.34362 -13.22472 -13.08996 -13.03132 -12.93979 -12.59543 -12.50153 -11.93071 -11.73106 -11.62718 -11.55211 -11.38275 -11.24204 -11.15487 -11.11660 -10.88114 -10.79553 -10.75247 -10.37311 -10.09117 -9.98138 -9.89635 -9.66314 -9.16660 -8.77738 -8.38754 -8.36158 -7.85937 -5.98359 -4.05153 1.19797 1.93804 2.63245 3.13997 3.35580 3.39543 3.42596 3.52887 4.07991 4.26225 4.42458 4.46197 4.54328 4.56006 4.73270 4.80111 4.92722 5.05493 5.10525 5.30463 5.32625 5.35682 5.44683 5.59066 5.62662 5.76341 5.79299 5.89389 6.03935 6.14105 6.19932 6.24320 6.31035 6.46798 6.57085 6.73833 6.79723 6.98607 7.04098 7.07177 7.19829 7.59818 7.73775 7.90209 8.11963 8.17404 8.38145 8.96205 9.59780 11.06983 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.012741 B = 0.004065 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.066528 B = 6886.076063 C = 8246.558597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.270 3.730 3 H 0.056 0.944 4 C -0.521 4.521 5 H 0.061 0.939 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.986 5.986 13 C 0.097 3.903 14 S 2.791 3.209 15 O -0.970 6.970 16 O -0.993 6.993 17 N -1.021 6.021 18 C 0.125 3.875 19 C -0.114 4.114 20 C -0.013 4.013 21 H 0.093 0.907 22 C 0.215 3.785 23 N -0.472 5.472 24 C -0.022 4.022 25 C -0.064 4.064 26 N -0.462 5.462 27 C 0.070 3.930 28 C 0.136 3.864 29 H 0.089 0.911 30 H 0.017 0.983 31 H 0.030 0.970 32 H 0.263 0.737 33 H 0.037 0.963 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.170 0.830 41 H 0.173 0.827 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.062 6.880 -19.418 21.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.167 3.833 3 H 0.074 0.926 4 C -0.561 4.561 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.828 5.828 13 C -0.049 4.049 14 S 2.802 3.198 15 O -0.954 6.954 16 O -0.977 6.977 17 N -0.859 5.859 18 C -0.001 4.001 19 C -0.154 4.154 20 C -0.035 4.035 21 H 0.112 0.888 22 C -0.047 4.047 23 N -0.190 5.190 24 C -0.170 4.170 25 C -0.197 4.197 26 N -0.145 5.145 27 C -0.073 4.073 28 C 0.009 3.991 29 H 0.108 0.892 30 H 0.036 0.964 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.187 0.813 41 H 0.190 0.810 42 H 0.094 0.906 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.100 0.900 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.021 6.394 -18.866 20.543 hybrid contribution -0.376 0.524 0.461 0.793 sum -5.397 6.918 -18.405 20.390 Atomic orbital electron populations 1.22072 0.97853 0.99602 1.00901 1.18721 0.91568 0.92776 0.80266 0.92640 1.21303 1.31623 1.13006 0.90143 0.92050 1.24897 0.94983 0.95027 0.98897 1.69873 1.36401 1.22665 1.23741 0.86579 0.79296 0.79601 0.82030 1.20209 1.21252 1.20258 1.57721 1.69891 1.19777 1.35453 1.21293 0.98668 0.82339 1.02622 1.01628 0.73406 0.72894 0.71912 1.93592 1.73868 1.56079 1.71882 1.93518 1.69082 1.60246 1.74848 1.59370 1.67148 1.24932 1.34421 1.21926 0.94666 0.97548 0.85925 1.22874 0.98492 0.92533 1.01488 1.20560 0.89092 0.95747 0.98079 0.88847 1.22894 0.98646 0.85996 0.97189 1.70276 1.02351 1.29000 1.17341 1.22351 1.00165 0.92266 1.02236 1.22660 0.90422 1.03806 1.02764 1.45303 1.17971 1.17928 1.33278 1.22042 0.97950 0.95974 0.91302 1.21596 0.95743 0.83730 0.98029 0.89199 0.96358 0.95132 0.92727 0.94444 0.89858 0.92092 0.91559 0.90525 0.88874 0.90278 0.81292 0.81024 0.90595 0.89598 0.89382 0.89965 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 8.97 37.16 0.33 -3.18 16 2 C 0.27 6.90 2.62 -69.08 -0.18 6.72 16 3 H 0.06 1.58 6.91 -51.93 -0.36 1.22 16 4 C -0.52 -14.48 7.99 -34.44 -0.28 -14.75 16 5 H 0.06 1.68 7.33 -52.49 -0.38 1.30 16 6 C 0.06 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -25.49 11.32 55.43 0.63 -24.86 16 8 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.99 -21.59 3.12 -115.84 -0.36 -21.96 16 13 C 0.10 1.83 9.65 59.85 0.58 2.40 16 14 S 2.79 57.85 6.35 -107.50 -0.68 57.17 16 15 O -0.97 -23.55 16.28 -57.18 -0.93 -24.49 16 16 O -0.99 -21.15 16.32 -57.18 -0.93 -22.09 16 17 N -1.02 -16.61 3.75 -111.30 -0.42 -17.03 16 18 C 0.13 1.56 6.99 -2.41 -0.02 1.54 16 19 C -0.11 -1.25 6.53 -24.47 -0.16 -1.41 16 20 C -0.01 -0.15 3.28 -89.94 -0.29 -0.45 16 21 H 0.09 0.78 6.87 -51.93 -0.36 0.43 16 22 C 0.22 2.77 6.45 -155.42 -1.00 1.77 16 23 N -0.47 -7.31 10.86 -10.82 -0.12 -7.43 16 24 C -0.02 -0.28 11.87 -17.81 -0.21 -0.49 16 25 C -0.06 -0.65 11.58 -16.56 -0.19 -0.85 16 26 N -0.46 -4.68 3.15 -121.28 -0.38 -5.06 16 27 C 0.07 0.39 10.83 59.85 0.65 1.04 16 28 C 0.14 2.07 6.57 -3.07 -0.02 2.05 16 29 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.03 0.70 7.67 -51.93 -0.40 0.30 16 32 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.63 7.02 -51.93 -0.36 1.26 16 35 H 0.06 1.06 7.02 -51.93 -0.36 0.70 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.09 1.20 7.83 -51.93 -0.41 0.80 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.17 1.84 8.06 -52.49 -0.42 1.42 16 41 H 0.17 1.14 8.06 -52.48 -0.42 0.71 16 42 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.09 0.42 7.13 -51.93 -0.37 0.05 16 45 H 0.08 1.49 7.71 -51.93 -0.40 1.08 16 46 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 381.77 15.07 5.75 5.75 Total: -1.00 -35.93 381.77 -10.44 -46.37 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -7.08 Total: 0.91 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -0.89 Total: -3.90 kcal Atomic # 7 Polarization: -75.69 SS G_CDS: -0.65 Total: -76.34 kcal Atomic # 8 Polarization: -44.71 SS G_CDS: -1.86 Total: -46.57 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 57.85 SS G_CDS: -0.68 Total: 57.17 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.93 -10.44 -46.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367166319.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.535 kcal (2) G-P(sol) polarization free energy of solvation -35.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds