Wall clock time and date at job start Wed Apr 1 2020 02:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46402 * 2 1 4 4 C 1.50699 * 109.47044 * 120.00211 * 2 1 3 5 5 H 1.07992 * 119.99978 * 120.00350 * 4 2 1 6 6 C 1.37876 * 119.99781 * 299.99667 * 4 2 1 7 7 N 1.31514 * 119.99924 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00053 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46972 * 60.00398 * 8 6 4 10 10 H 1.48499 * 109.47464 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46986 * 300.00599 * 8 6 4 12 12 N 1.46502 * 109.47134 * 240.00097 * 2 1 3 13 13 C 1.46499 * 120.00062 * 300.00045 * 12 2 1 14 14 S 1.65606 * 119.99935 * 119.99548 * 12 2 1 15 15 O 1.42098 * 106.40010 * 23.54321 * 14 12 2 16 16 O 1.42094 * 106.39890 * 156.45686 * 14 12 2 17 17 N 1.65596 * 107.21969 * 270.00204 * 14 12 2 18 18 C 1.47424 * 125.64778 * 269.69175 * 17 14 12 19 19 C 1.55121 * 104.72347 * 155.81853 * 18 17 14 20 20 C 1.55160 * 101.48767 * 37.29392 * 19 18 17 21 21 H 1.09001 * 110.87025 * 82.76652 * 20 19 18 22 22 C 1.50697 * 110.72299 * 205.96868 * 20 19 18 23 23 N 1.30497 * 125.64820 * 53.21272 * 22 20 19 24 24 C 1.34136 * 109.25764 * 179.89383 * 23 22 20 25 25 C 1.34672 * 108.01428 * 0.37267 * 24 23 22 26 26 N 1.35040 * 125.65029 * 233.52474 * 22 20 19 27 27 C 1.46497 * 126.39959 * 359.93901 * 26 22 20 28 28 C 1.47020 * 125.65103 * 90.00236 * 17 14 12 29 29 H 1.09000 * 109.46982 * 299.99790 * 1 2 3 30 30 H 1.09002 * 109.47164 * 60.00347 * 1 2 3 31 31 H 1.09003 * 109.46815 * 179.97438 * 1 2 3 32 32 H 0.97005 * 119.99751 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.47391 * 89.99876 * 13 12 2 34 34 H 1.09001 * 109.46813 * 329.99933 * 13 12 2 35 35 H 1.09004 * 109.47041 * 210.00060 * 13 12 2 36 36 H 1.09002 * 110.36286 * 274.74869 * 18 17 14 37 37 H 1.09002 * 110.36783 * 37.06627 * 18 17 14 38 38 H 1.08996 * 111.19458 * 279.19126 * 19 18 17 39 39 H 1.09005 * 110.94088 * 155.29076 * 19 18 17 40 40 H 1.07991 * 125.99181 * 180.11855 * 24 23 22 41 41 H 1.08003 * 126.58545 * 179.81853 * 25 24 23 42 42 H 1.08998 * 109.47068 * 90.00284 * 27 26 22 43 43 H 1.09005 * 109.47362 * 210.00410 * 27 26 22 44 44 H 1.09003 * 109.47189 * 330.00610 * 27 26 22 45 45 H 1.09000 * 109.88048 * 300.43777 * 28 17 14 46 46 H 1.09004 * 109.88513 * 61.60099 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8297 2.6033 8 14 2.3225 -1.1195 4.0079 9 1 3.8075 -1.1189 4.0077 10 1 1.8270 -0.4199 5.2204 11 1 1.8281 -2.5198 4.0081 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4281 14 16 2.9704 0.1143 -2.2863 15 8 3.5794 1.1830 -1.5749 16 8 3.7119 -0.8787 -2.9814 17 7 1.9607 0.8091 -3.3998 18 6 1.5054 0.1839 -4.6548 19 6 0.1740 0.9041 -4.9938 20 6 0.4870 2.3574 -4.5494 21 1 1.0311 2.8928 -5.3275 22 6 -0.7798 3.0890 -4.1876 23 7 -1.6802 2.6763 -3.3380 24 6 -2.6677 3.5812 -3.2655 25 6 -2.3717 4.5891 -4.1082 26 7 -1.1742 4.2774 -4.6934 27 6 -0.4546 5.0828 -5.6832 28 6 1.3749 2.1542 -3.3037 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.7089 1.1613 3.4844 33 1 0.7376 -2.1444 -1.9994 34 1 1.5296 -2.5968 -0.4709 35 1 2.4630 -2.5818 -1.9864 36 1 2.2380 0.3438 -5.4459 37 1 1.3325 -0.8821 -4.5067 38 1 -0.6551 0.4902 -4.4200 39 1 -0.0324 0.8584 -6.0631 40 1 -3.5479 3.5116 -2.6437 41 1 -2.9649 5.4738 -4.2872 42 1 -0.7724 4.7958 -6.6855 43 1 -0.6732 6.1383 -5.5210 44 1 0.6172 4.9136 -5.5794 45 1 0.7696 2.2311 -2.4005 46 1 2.1668 2.9031 -3.2867 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367166319.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:27 Heat of formation + Delta-G solvation = -24.456551 kcal Electronic energy + Delta-G solvation = -29577.196827 eV Core-core repulsion = 25629.242008 eV Total energy + Delta-G solvation = -3947.954820 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.151 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.01658 -39.37238 -38.38157 -37.88701 -36.93167 -34.86846 -34.53131 -33.00283 -30.95012 -30.51360 -28.96467 -27.68046 -27.25095 -27.01156 -24.02746 -23.06331 -22.49397 -22.06987 -20.26061 -19.93897 -18.92719 -18.67583 -18.29567 -17.91142 -17.16752 -16.84286 -16.47223 -16.24783 -15.31460 -15.24637 -15.14135 -14.82843 -14.77337 -14.42178 -14.24179 -14.06856 -13.83162 -13.76936 -13.69561 -13.46016 -13.35429 -13.25651 -13.16059 -13.01582 -12.73879 -12.72004 -12.64486 -12.48421 -12.30850 -12.22611 -12.13885 -11.92052 -11.76274 -11.19776 -10.80920 -10.51682 -10.47309 -10.04942 -9.65509 -9.25447 -8.11490 -6.26549 -0.41643 1.12018 1.42012 1.44484 1.51727 1.91498 2.03024 2.20804 2.41993 2.55261 3.15776 3.17449 3.38134 3.64745 3.77012 3.91706 4.02354 4.13080 4.22089 4.33517 4.37525 4.49224 4.57708 4.65187 4.71250 4.72546 4.74284 4.76281 4.83070 4.93112 4.93732 4.98500 5.04124 5.10604 5.14638 5.25030 5.30751 5.35446 5.44577 5.59316 5.74670 5.86481 5.90465 6.12878 6.28317 6.31282 6.80933 7.25330 7.42215 8.92715 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.012741 B = 0.004065 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.066528 B = 6886.076063 C = 8246.558597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.279 3.721 3 H 0.017 0.983 4 C -0.541 4.541 5 H 0.060 0.940 6 C 0.016 3.984 7 N -0.915 5.915 8 Si 0.959 3.041 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.265 1.265 12 N -0.998 5.998 13 C 0.094 3.906 14 S 2.806 3.194 15 O -1.014 7.014 16 O -0.999 6.999 17 N -1.017 6.017 18 C 0.114 3.886 19 C -0.103 4.103 20 C -0.002 4.002 21 H 0.135 0.865 22 C 0.197 3.803 23 N -0.524 5.524 24 C -0.065 4.065 25 C -0.043 4.043 26 N -0.457 5.457 27 C 0.060 3.940 28 C 0.132 3.868 29 H 0.063 0.937 30 H 0.025 0.975 31 H 0.038 0.962 32 H 0.264 0.736 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.118 0.882 40 H 0.172 0.828 41 H 0.210 0.790 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.097 0.903 45 H 0.042 0.958 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.239 7.143 -22.027 23.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.175 3.825 3 H 0.035 0.965 4 C -0.581 4.581 5 H 0.078 0.922 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.784 3.216 9 H -0.202 1.202 10 H -0.206 1.206 11 H -0.189 1.189 12 N -0.839 5.839 13 C -0.052 4.052 14 S 2.817 3.183 15 O -0.998 6.998 16 O -0.983 6.983 17 N -0.858 5.858 18 C -0.010 4.010 19 C -0.143 4.143 20 C -0.023 4.023 21 H 0.152 0.848 22 C -0.066 4.066 23 N -0.243 5.243 24 C -0.212 4.212 25 C -0.177 4.177 26 N -0.139 5.139 27 C -0.081 4.081 28 C 0.005 3.995 29 H 0.081 0.919 30 H 0.044 0.956 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.114 0.886 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.137 0.863 40 H 0.190 0.810 41 H 0.227 0.773 42 H 0.116 0.884 43 H 0.123 0.877 44 H 0.116 0.884 45 H 0.061 0.939 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.186 6.635 -21.503 23.093 hybrid contribution -0.355 0.518 1.175 1.332 sum -5.540 7.153 -20.327 22.250 Atomic orbital electron populations 1.21811 0.97076 0.99670 0.99892 1.18306 0.91917 0.91002 0.81308 0.96489 1.21628 1.31865 1.13210 0.91390 0.92213 1.25702 0.95103 0.95704 1.01828 1.70010 1.37176 1.23782 1.24406 0.85603 0.78511 0.79025 0.78457 1.20236 1.20620 1.18950 1.57649 1.69972 1.21149 1.35142 1.21456 1.00443 0.80624 1.02652 1.00892 0.73428 0.72157 0.71817 1.93529 1.75424 1.57467 1.73372 1.93497 1.69619 1.60466 1.74699 1.58961 1.66613 1.25513 1.34764 1.22345 0.96213 0.97803 0.84610 1.22826 0.96543 0.91551 1.03392 1.20606 0.88259 0.96646 0.96833 0.84769 1.22963 0.98737 0.87279 0.97588 1.70163 1.03928 1.31128 1.19100 1.22648 1.00698 0.93532 1.04344 1.23182 0.90192 1.03631 1.00655 1.45563 1.17856 1.17258 1.33268 1.22434 0.98148 0.96444 0.91071 1.21668 0.96025 0.83113 0.98715 0.91852 0.95602 0.94289 0.92647 0.91931 0.90938 0.90635 0.88619 0.90172 0.91396 0.86333 0.81046 0.77297 0.88423 0.87678 0.88440 0.93902 0.90883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.30 8.97 71.98 0.65 -5.65 16 2 C 0.28 14.87 2.62 44.25 0.12 14.98 16 3 H 0.02 1.05 6.91 -2.39 -0.02 1.03 16 4 C -0.54 -30.87 7.99 25.60 0.20 -30.67 16 5 H 0.06 3.34 7.33 -2.91 -0.02 3.32 16 6 C 0.02 0.94 5.30 84.65 0.45 1.38 16 7 N -0.91 -54.09 11.32 21.45 0.24 -53.85 16 8 Si 0.96 44.82 29.54 68.60 2.03 46.84 16 9 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 11 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 12 N -1.00 -44.60 3.12 -520.42 -1.62 -46.23 16 13 C 0.09 3.48 9.65 127.77 1.23 4.72 16 14 S 2.81 117.92 6.35 -56.49 -0.36 117.57 16 15 O -1.01 -51.21 16.28 -128.00 -2.08 -53.29 16 16 O -1.00 -41.93 16.32 -128.00 -2.09 -44.02 16 17 N -1.02 -32.70 3.75 -506.04 -1.90 -34.60 16 18 C 0.11 2.58 6.99 86.93 0.61 3.19 16 19 C -0.10 -2.01 6.53 32.06 0.21 -1.80 16 20 C 0.00 -0.04 3.28 -10.35 -0.03 -0.08 16 21 H 0.13 1.70 6.87 -2.39 -0.02 1.68 16 22 C 0.20 4.87 6.45 138.13 0.89 5.76 16 23 N -0.52 -16.64 10.86 -188.14 -2.04 -18.69 16 24 C -0.06 -1.68 11.87 83.52 0.99 -0.69 16 25 C -0.04 -0.79 11.58 83.09 0.96 0.17 16 26 N -0.46 -8.17 3.15 -537.61 -1.69 -9.87 16 27 C 0.06 0.43 10.83 127.77 1.38 1.81 16 28 C 0.13 4.02 6.57 86.73 0.57 4.59 16 29 H 0.06 3.54 6.07 -2.39 -0.01 3.52 16 30 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.04 1.83 7.67 -2.39 -0.02 1.82 16 32 H 0.26 14.82 8.31 -92.70 -0.77 14.05 16 33 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.07 2.84 7.02 -2.39 -0.02 2.82 16 35 H 0.08 2.56 7.02 -2.38 -0.02 2.55 16 36 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.07 1.70 7.83 -2.39 -0.02 1.68 16 39 H 0.12 1.41 8.14 -2.38 -0.02 1.39 16 40 H 0.17 3.97 8.06 -2.92 -0.02 3.95 16 41 H 0.21 2.06 8.06 -2.91 -0.02 2.04 16 42 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.10 0.39 8.14 -2.38 -0.02 0.37 16 44 H 0.10 0.54 7.13 -2.39 -0.02 0.53 16 45 H 0.04 1.64 7.71 -2.39 -0.02 1.63 16 46 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 Total: -1.00 -82.07 381.77 -0.32 -82.39 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.97 Total: 16.01 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: 8.23 Total: -2.27 kcal Atomic # 7 Polarization: -156.21 SS G_CDS: -7.02 Total: -163.23 kcal Atomic # 8 Polarization: -93.14 SS G_CDS: -4.17 Total: -97.31 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Atomic # 16 Polarization: 117.92 SS G_CDS: -0.36 Total: 117.57 kcal Total: -82.07 -0.32 -82.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367166319.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.936 kcal (2) G-P(sol) polarization free energy of solvation -82.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds