Wall clock time and date at job start Wed Apr 1 2020 02:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.46505 * 120.00341 * 300.00268 * 12 2 1 14 14 S 1.65599 * 119.99944 * 120.00026 * 12 2 1 15 15 O 1.42101 * 106.40626 * 203.54417 * 14 12 2 16 16 O 1.42101 * 106.40278 * 336.46186 * 14 12 2 17 17 N 1.65598 * 107.22076 * 90.00262 * 14 12 2 18 18 C 1.47021 * 125.65142 * 269.69674 * 17 14 12 19 19 C 1.54333 * 107.27146 * 178.84603 * 18 17 14 20 20 C 1.55159 * 103.01573 * 338.13897 * 19 18 17 21 21 H 1.08999 * 111.00782 * 277.22986 * 20 19 18 22 22 C 1.50704 * 111.00257 * 153.37856 * 20 19 18 23 23 N 1.30498 * 125.65132 * 307.50105 * 22 20 19 24 24 C 1.34130 * 109.25633 * 179.89455 * 23 22 20 25 25 C 1.34667 * 108.02061 * 0.36256 * 24 23 22 26 26 N 1.35043 * 125.65052 * 127.80130 * 22 20 19 27 27 C 1.46504 * 126.39250 * 359.94510 * 26 22 20 28 28 C 1.47430 * 125.64697 * 89.99856 * 17 14 12 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 33 33 H 1.09005 * 109.46851 * 89.99998 * 13 12 2 34 34 H 1.08997 * 109.47129 * 209.99273 * 13 12 2 35 35 H 1.08993 * 109.46804 * 329.99912 * 13 12 2 36 36 H 1.09003 * 109.87749 * 298.39351 * 18 17 14 37 37 H 1.09002 * 109.88014 * 59.55514 * 18 17 14 38 38 H 1.08990 * 110.85369 * 219.67091 * 19 18 17 39 39 H 1.08995 * 110.66447 * 96.51808 * 19 18 17 40 40 H 1.08001 * 125.98928 * 180.11420 * 24 23 22 41 41 H 1.08002 * 126.59410 * 179.74996 * 25 24 23 42 42 H 1.08995 * 109.47312 * 90.00264 * 27 26 22 43 43 H 1.09001 * 109.47153 * 209.99774 * 27 26 22 44 44 H 1.08998 * 109.47673 * 330.00034 * 27 26 22 45 45 H 1.08992 * 110.36684 * 322.92922 * 28 17 14 46 46 H 1.08993 * 110.36587 * 85.14866 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1474 -2.2863 3.6038 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5865 4.8165 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 16 2.9704 0.1141 -2.2862 15 8 2.8227 -0.5646 -3.5259 16 8 2.6904 1.4972 -2.1193 17 7 4.5437 -0.1043 -1.8180 18 6 5.2966 0.7717 -0.9084 19 6 6.7037 0.1597 -0.7430 20 6 6.4854 -1.3275 -1.1280 21 1 6.0981 -1.8970 -0.2831 22 6 7.7574 -1.9418 -1.6530 23 7 8.4961 -1.4573 -2.6135 24 6 9.5489 -2.2643 -2.8120 25 6 9.4549 -3.2920 -1.9469 26 7 8.3187 -3.0880 -1.2114 27 6 7.8071 -3.9514 -0.1441 28 6 5.4235 -1.2059 -2.2493 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 0.7082 1.1609 3.4844 33 1 0.7375 -2.1444 -1.9993 34 1 2.4628 -2.5819 -1.9863 35 1 1.5295 -2.5969 -0.4708 36 1 5.3729 1.7716 -1.3355 37 1 4.7979 0.8169 0.0598 38 1 7.0451 0.2449 0.2885 39 1 7.4117 0.6340 -1.4225 40 1 10.3323 -2.1179 -3.5409 41 1 10.1434 -4.1187 -1.8519 42 1 7.1370 -4.6979 -0.5704 43 1 8.6405 -4.4511 0.3498 44 1 7.2633 -3.3477 0.5825 45 1 4.8562 -2.1325 -2.3365 46 1 5.8988 -0.9621 -3.1993 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367166320.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:32 Heat of formation + Delta-G solvation = -2.769574 kcal Electronic energy + Delta-G solvation = -29536.081176 eV Core-core repulsion = 25589.066774 eV Total energy + Delta-G solvation = -3947.014402 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.151 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.23597 -38.19912 -36.67445 -36.14097 -35.22064 -34.15967 -32.63327 -31.90869 -29.46107 -29.08311 -28.02935 -27.07419 -25.51898 -25.21658 -22.93053 -21.89651 -21.29184 -20.68866 -19.40323 -18.45853 -17.49939 -17.11632 -16.84646 -16.43028 -15.86669 -15.64986 -15.29004 -14.61636 -14.38068 -14.01628 -13.60228 -13.53698 -13.28785 -13.25167 -13.15143 -13.09182 -12.96361 -12.74849 -12.48379 -11.99688 -11.81529 -11.61262 -11.44140 -11.39705 -11.30408 -11.23977 -11.15674 -11.00113 -10.91862 -10.70045 -10.44909 -10.24248 -10.11531 -10.01977 -9.72654 -9.33681 -8.66658 -8.53035 -8.45261 -7.96835 -6.13743 -4.22354 1.18702 1.88734 2.61065 3.03251 3.17720 3.25684 3.27488 3.48224 4.10813 4.25016 4.29736 4.48483 4.58440 4.60296 4.82080 4.85765 4.95746 5.09470 5.16622 5.19630 5.34687 5.44873 5.49254 5.51710 5.63615 5.74002 5.94488 6.04376 6.06750 6.14984 6.17114 6.25685 6.34689 6.47672 6.57457 6.65348 6.70496 6.86275 6.90297 7.00998 7.10548 7.48390 7.59203 7.75296 8.01878 8.02180 8.22643 8.80813 9.43742 10.91296 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.011265 B = 0.004415 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.921440 B = 6340.538036 C = 7789.546345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.267 3.733 3 H 0.059 0.941 4 C -0.524 4.524 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.895 3.105 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.990 5.990 13 C 0.108 3.892 14 S 2.794 3.206 15 O -0.993 6.993 16 O -0.974 6.974 17 N -1.017 6.017 18 C 0.122 3.878 19 C -0.110 4.110 20 C -0.020 4.020 21 H 0.100 0.900 22 C 0.223 3.777 23 N -0.484 5.484 24 C -0.028 4.028 25 C -0.064 4.064 26 N -0.458 5.458 27 C 0.067 3.933 28 C 0.144 3.856 29 H 0.012 0.988 30 H 0.092 0.908 31 H 0.032 0.968 32 H 0.263 0.737 33 H 0.043 0.957 34 H 0.047 0.953 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.169 0.831 41 H 0.172 0.828 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.070 0.930 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.874 -9.217 -4.159 17.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.164 3.836 3 H 0.077 0.923 4 C -0.564 4.564 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.523 5.523 8 Si 0.723 3.277 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.832 5.832 13 C -0.039 4.039 14 S 2.805 3.195 15 O -0.977 6.977 16 O -0.959 6.959 17 N -0.856 5.856 18 C -0.003 4.003 19 C -0.150 4.150 20 C -0.041 4.041 21 H 0.118 0.882 22 C -0.040 4.040 23 N -0.202 5.202 24 C -0.176 4.176 25 C -0.196 4.196 26 N -0.141 5.141 27 C -0.075 4.075 28 C 0.017 3.983 29 H 0.031 0.969 30 H 0.111 0.889 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.186 0.814 41 H 0.190 0.810 42 H 0.098 0.902 43 H 0.104 0.896 44 H 0.110 0.890 45 H 0.088 0.912 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 13.186 -7.962 -5.131 16.235 hybrid contribution 0.706 -1.707 1.787 2.570 sum 13.891 -9.669 -3.344 17.252 Atomic orbital electron populations 1.22054 0.97975 0.99640 1.00777 1.18739 0.91887 0.92751 0.80239 0.92343 1.21392 1.31807 1.13039 0.90115 0.91939 1.24923 0.94998 0.94964 0.98917 1.69889 1.36143 1.22587 1.23696 0.86509 0.78644 0.79497 0.83050 1.19959 1.20979 1.21019 1.57838 1.64019 1.21393 1.39998 1.21170 0.98886 0.82119 1.01699 1.01513 0.71538 0.73426 0.73034 1.93540 1.85764 1.76436 1.41988 1.93578 1.83416 1.32086 1.86778 1.59178 1.29016 1.35962 1.61400 1.21697 0.91126 0.93301 0.94203 1.22640 0.97221 0.92621 1.02516 1.20763 0.88127 0.96967 0.98284 0.88195 1.22921 0.98317 0.86624 0.96152 1.70212 1.05226 1.29378 1.15364 1.22297 0.99262 0.93624 1.02430 1.22668 0.93072 1.04326 0.99561 1.45329 1.20026 1.19909 1.28800 1.22111 1.01030 0.94871 0.89530 1.21766 0.90355 0.89555 0.96585 0.96872 0.88910 0.94906 0.92666 0.93866 0.93454 0.90259 0.91172 0.90111 0.90123 0.89501 0.81413 0.81040 0.90227 0.89586 0.89028 0.91180 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 8.97 37.16 0.33 -3.08 16 2 C 0.27 6.38 2.62 -69.08 -0.18 6.20 16 3 H 0.06 1.56 6.91 -51.93 -0.36 1.20 16 4 C -0.52 -12.86 7.99 -34.44 -0.28 -13.14 16 5 H 0.06 1.48 7.33 -52.49 -0.38 1.10 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -23.64 11.32 55.43 0.63 -23.01 16 8 Si 0.90 19.47 29.54 -169.99 -5.02 14.45 16 9 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 N -0.99 -20.47 3.12 -115.85 -0.36 -20.83 16 13 C 0.11 1.90 9.29 59.85 0.56 2.46 16 14 S 2.79 56.80 6.30 -107.50 -0.68 56.13 16 15 O -0.99 -21.13 16.80 -57.17 -0.96 -22.09 16 16 O -0.97 -22.72 16.28 -57.17 -0.93 -23.65 16 17 N -1.02 -17.32 3.75 -111.41 -0.42 -17.74 16 18 C 0.12 1.90 6.99 -3.06 -0.02 1.88 16 19 C -0.11 -1.41 6.41 -24.89 -0.16 -1.57 16 20 C -0.02 -0.25 3.39 -89.62 -0.30 -0.55 16 21 H 0.10 1.15 6.82 -51.93 -0.35 0.80 16 22 C 0.22 2.82 6.59 -155.42 -1.02 1.79 16 23 N -0.48 -6.78 10.90 -10.81 -0.12 -6.89 16 24 C -0.03 -0.31 11.87 -17.81 -0.21 -0.52 16 25 C -0.06 -0.60 11.58 -16.56 -0.19 -0.79 16 26 N -0.46 -4.70 3.15 -121.28 -0.38 -5.08 16 27 C 0.07 0.46 10.87 59.85 0.65 1.11 16 28 C 0.14 2.12 6.44 -2.52 -0.02 2.11 16 29 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 31 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 32 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 33 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.73 7.79 -51.93 -0.40 0.32 16 35 H 0.08 1.40 7.02 -51.93 -0.36 1.03 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.09 1.13 7.80 -51.93 -0.41 0.73 16 40 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 41 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.09 0.61 7.04 -51.93 -0.37 0.25 16 45 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.08 1.18 7.96 -51.93 -0.41 0.77 16 LS Contribution 382.76 15.07 5.77 5.77 Total: -1.00 -32.67 382.76 -10.54 -43.21 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -7.13 Total: 2.32 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -0.94 Total: -2.58 kcal Atomic # 7 Polarization: -72.91 SS G_CDS: -0.65 Total: -73.56 kcal Atomic # 8 Polarization: -43.85 SS G_CDS: -1.89 Total: -45.74 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.45 kcal Atomic # 16 Polarization: 56.80 SS G_CDS: -0.68 Total: 56.13 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.67 -10.54 -43.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367166320.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.445 kcal (2) G-P(sol) polarization free energy of solvation -32.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds