Wall clock time and date at job start Wed Apr 1 2020 02:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.46505 * 120.00341 * 300.00268 * 12 2 1 14 14 S 1.65599 * 119.99944 * 120.00026 * 12 2 1 15 15 O 1.42101 * 106.40626 * 203.54417 * 14 12 2 16 16 O 1.42101 * 106.40278 * 336.46186 * 14 12 2 17 17 N 1.65598 * 107.22076 * 90.00262 * 14 12 2 18 18 C 1.47021 * 125.65142 * 269.69674 * 17 14 12 19 19 C 1.54333 * 107.27146 * 178.84603 * 18 17 14 20 20 C 1.55159 * 103.01573 * 338.13897 * 19 18 17 21 21 H 1.08999 * 111.00782 * 277.22986 * 20 19 18 22 22 C 1.50704 * 111.00257 * 153.37856 * 20 19 18 23 23 N 1.30498 * 125.65132 * 307.50105 * 22 20 19 24 24 C 1.34130 * 109.25633 * 179.89455 * 23 22 20 25 25 C 1.34667 * 108.02061 * 0.36256 * 24 23 22 26 26 N 1.35043 * 125.65052 * 127.80130 * 22 20 19 27 27 C 1.46504 * 126.39250 * 359.94510 * 26 22 20 28 28 C 1.47430 * 125.64697 * 89.99856 * 17 14 12 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 33 33 H 1.09005 * 109.46851 * 89.99998 * 13 12 2 34 34 H 1.08997 * 109.47129 * 209.99273 * 13 12 2 35 35 H 1.08993 * 109.46804 * 329.99912 * 13 12 2 36 36 H 1.09003 * 109.87749 * 298.39351 * 18 17 14 37 37 H 1.09002 * 109.88014 * 59.55514 * 18 17 14 38 38 H 1.08990 * 110.85369 * 219.67091 * 19 18 17 39 39 H 1.08995 * 110.66447 * 96.51808 * 19 18 17 40 40 H 1.08001 * 125.98928 * 180.11420 * 24 23 22 41 41 H 1.08002 * 126.59410 * 179.74996 * 25 24 23 42 42 H 1.08995 * 109.47312 * 90.00264 * 27 26 22 43 43 H 1.09001 * 109.47153 * 209.99774 * 27 26 22 44 44 H 1.08998 * 109.47673 * 330.00034 * 27 26 22 45 45 H 1.08992 * 110.36684 * 322.92922 * 28 17 14 46 46 H 1.08993 * 110.36587 * 85.14866 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1474 -2.2863 3.6038 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5865 4.8165 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 16 2.9704 0.1141 -2.2862 15 8 2.8227 -0.5646 -3.5259 16 8 2.6904 1.4972 -2.1193 17 7 4.5437 -0.1043 -1.8180 18 6 5.2966 0.7717 -0.9084 19 6 6.7037 0.1597 -0.7430 20 6 6.4854 -1.3275 -1.1280 21 1 6.0981 -1.8970 -0.2831 22 6 7.7574 -1.9418 -1.6530 23 7 8.4961 -1.4573 -2.6135 24 6 9.5489 -2.2643 -2.8120 25 6 9.4549 -3.2920 -1.9469 26 7 8.3187 -3.0880 -1.2114 27 6 7.8071 -3.9514 -0.1441 28 6 5.4235 -1.2059 -2.2493 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 0.7082 1.1609 3.4844 33 1 0.7375 -2.1444 -1.9993 34 1 2.4628 -2.5819 -1.9863 35 1 1.5295 -2.5969 -0.4708 36 1 5.3729 1.7716 -1.3355 37 1 4.7979 0.8169 0.0598 38 1 7.0451 0.2449 0.2885 39 1 7.4117 0.6340 -1.4225 40 1 10.3323 -2.1179 -3.5409 41 1 10.1434 -4.1187 -1.8519 42 1 7.1370 -4.6979 -0.5704 43 1 8.6405 -4.4511 0.3498 44 1 7.2633 -3.3477 0.5825 45 1 4.8562 -2.1325 -2.3365 46 1 5.8988 -0.9621 -3.1993 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367166320.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:31 Heat of formation + Delta-G solvation = -24.417183 kcal Electronic energy + Delta-G solvation = -29537.019887 eV Core-core repulsion = 25589.066774 eV Total energy + Delta-G solvation = -3947.953113 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.151 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.03081 -39.37766 -38.39565 -37.87983 -36.94849 -34.87908 -34.48392 -33.00729 -30.93800 -30.55191 -28.96373 -27.71644 -27.23781 -26.99975 -24.06235 -23.03143 -22.48979 -22.08067 -20.32521 -19.94588 -18.82692 -18.52701 -18.34517 -18.02762 -17.14195 -16.74864 -16.51453 -16.22544 -15.35171 -15.25560 -15.10917 -14.77962 -14.62522 -14.46398 -14.31809 -14.24437 -13.80456 -13.75424 -13.70799 -13.47766 -13.32809 -13.29709 -13.19319 -12.98145 -12.82564 -12.74487 -12.65646 -12.43795 -12.32510 -12.16068 -12.11837 -11.89268 -11.74360 -11.17337 -10.87127 -10.50156 -10.47648 -10.04426 -9.65219 -9.25908 -8.05297 -6.20395 -0.41761 1.10748 1.47787 1.50325 1.60148 1.86604 2.02533 2.18366 2.48124 2.54904 3.13657 3.23692 3.37780 3.66520 3.71644 3.92330 4.02049 4.08283 4.20039 4.29942 4.39298 4.45688 4.51810 4.64973 4.68723 4.73776 4.74558 4.79233 4.84405 4.90452 4.94592 4.97184 4.99728 5.10999 5.15092 5.25797 5.26876 5.36861 5.42175 5.63832 5.73860 5.87801 5.90433 6.12206 6.26209 6.31227 6.88864 7.20617 7.49323 8.99768 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.011265 B = 0.004415 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.921440 B = 6340.538036 C = 7789.546345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.272 3.728 3 H 0.023 0.977 4 C -0.524 4.524 5 H 0.073 0.927 6 C 0.016 3.984 7 N -0.920 5.920 8 Si 0.959 3.041 9 H -0.256 1.256 10 H -0.286 1.286 11 H -0.288 1.288 12 N -0.994 5.994 13 C 0.101 3.899 14 S 2.807 3.193 15 O -1.004 7.004 16 O -1.011 7.011 17 N -1.016 6.016 18 C 0.118 3.882 19 C -0.099 4.099 20 C -0.009 4.009 21 H 0.115 0.885 22 C 0.201 3.799 23 N -0.520 5.520 24 C -0.058 4.058 25 C -0.045 4.045 26 N -0.457 5.457 27 C 0.059 3.941 28 C 0.140 3.860 29 H 0.015 0.985 30 H 0.070 0.930 31 H 0.045 0.955 32 H 0.262 0.738 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.100 0.900 39 H 0.082 0.918 40 H 0.183 0.817 41 H 0.210 0.790 42 H 0.089 0.911 43 H 0.111 0.889 44 H 0.092 0.908 45 H 0.081 0.919 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.801 -12.132 -3.292 20.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.168 3.832 3 H 0.041 0.959 4 C -0.563 4.563 5 H 0.091 0.909 6 C -0.183 4.183 7 N -0.559 5.559 8 Si 0.785 3.215 9 H -0.180 1.180 10 H -0.212 1.212 11 H -0.214 1.214 12 N -0.836 5.836 13 C -0.045 4.045 14 S 2.818 3.182 15 O -0.988 6.988 16 O -0.996 6.996 17 N -0.856 5.856 18 C -0.008 4.008 19 C -0.139 4.139 20 C -0.030 4.030 21 H 0.133 0.867 22 C -0.062 4.062 23 N -0.239 5.239 24 C -0.206 4.206 25 C -0.179 4.179 26 N -0.138 5.138 27 C -0.082 4.082 28 C 0.013 3.987 29 H 0.034 0.966 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.118 0.882 39 H 0.101 0.899 40 H 0.200 0.800 41 H 0.227 0.773 42 H 0.108 0.892 43 H 0.129 0.871 44 H 0.111 0.889 45 H 0.099 0.901 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 15.104 -10.909 -4.278 19.117 hybrid contribution 0.165 -0.824 1.439 1.667 sum 15.269 -11.733 -2.839 19.465 Atomic orbital electron populations 1.21957 0.98040 1.00083 0.99845 1.18437 0.91828 0.91419 0.81496 0.95890 1.21611 1.31420 1.13026 0.90236 0.90860 1.25701 0.95192 0.95554 1.01872 1.70036 1.37523 1.24158 1.24195 0.85492 0.77981 0.78787 0.79223 1.18009 1.21242 1.21430 1.57717 1.64561 1.22571 1.38781 1.21390 1.00265 0.80445 1.02360 1.00893 0.72075 0.72469 0.72769 1.93516 1.86327 1.76391 1.42548 1.93524 1.84390 1.34448 1.87203 1.58890 1.28143 1.37093 1.61524 1.21806 0.92505 0.93365 0.93091 1.22567 0.94952 0.92758 1.03604 1.20640 0.87817 0.96859 0.97704 0.86700 1.22702 0.98541 0.88007 0.96939 1.70128 1.06457 1.30957 1.16360 1.22720 0.99516 0.94370 1.03978 1.23253 0.92631 1.04211 0.97785 1.45545 1.19845 1.19363 1.29076 1.22399 1.02332 0.94660 0.88817 1.21928 0.90649 0.88952 0.97139 0.96568 0.91092 0.93641 0.92853 0.93132 0.91002 0.89996 0.91586 0.91483 0.88183 0.89898 0.80002 0.77348 0.89235 0.87051 0.88921 0.90102 0.91444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.66 8.97 71.98 0.65 -6.02 16 2 C 0.27 13.16 2.62 44.25 0.12 13.28 16 3 H 0.02 1.28 6.91 -2.39 -0.02 1.27 16 4 C -0.52 -25.36 7.99 25.60 0.20 -25.16 16 5 H 0.07 3.33 7.33 -2.91 -0.02 3.31 16 6 C 0.02 0.82 5.30 84.66 0.45 1.27 16 7 N -0.92 -49.86 11.32 21.45 0.24 -49.61 16 8 Si 0.96 39.11 29.54 68.60 2.03 41.14 16 9 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 10 H -0.29 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.29 -11.87 7.11 99.48 0.71 -11.16 16 12 N -0.99 -40.78 3.12 -520.44 -1.62 -42.41 16 13 C 0.10 3.39 9.29 127.77 1.19 4.57 16 14 S 2.81 115.08 6.30 -56.49 -0.36 114.73 16 15 O -1.00 -42.40 16.80 -128.00 -2.15 -44.55 16 16 O -1.01 -48.81 16.28 -128.00 -2.08 -50.89 16 17 N -1.02 -34.51 3.75 -506.41 -1.90 -36.41 16 18 C 0.12 3.68 6.99 86.73 0.61 4.29 16 19 C -0.10 -2.44 6.41 31.79 0.20 -2.23 16 20 C -0.01 -0.20 3.39 -10.14 -0.03 -0.24 16 21 H 0.11 2.34 6.82 -2.39 -0.02 2.33 16 22 C 0.20 4.72 6.59 138.13 0.91 5.63 16 23 N -0.52 -14.03 10.90 -188.13 -2.05 -16.08 16 24 C -0.06 -1.22 11.87 83.52 0.99 -0.22 16 25 C -0.05 -0.71 11.58 83.09 0.96 0.25 16 26 N -0.46 -7.97 3.15 -537.61 -1.69 -9.67 16 27 C 0.06 0.58 10.87 127.77 1.39 1.97 16 28 C 0.14 3.97 6.44 86.86 0.56 4.53 16 29 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 3.72 6.07 -2.39 -0.01 3.70 16 31 H 0.04 1.99 7.67 -2.38 -0.02 1.97 16 32 H 0.26 13.58 8.31 -92.71 -0.77 12.81 16 33 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.07 2.04 7.79 -2.39 -0.02 2.02 16 35 H 0.08 2.71 7.02 -2.39 -0.02 2.69 16 36 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.08 2.12 7.80 -2.39 -0.02 2.10 16 40 H 0.18 2.94 8.06 -2.91 -0.02 2.92 16 41 H 0.21 1.53 8.06 -2.91 -0.02 1.51 16 42 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.09 0.91 7.04 -2.39 -0.02 0.89 16 45 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.07 2.05 7.96 -2.39 -0.02 2.04 16 Total: -1.00 -71.01 382.76 -0.43 -71.44 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.97 Total: 20.42 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 8.19 Total: 1.91 kcal Atomic # 7 Polarization: -147.16 SS G_CDS: -7.03 Total: -154.19 kcal Atomic # 8 Polarization: -91.21 SS G_CDS: -4.23 Total: -95.44 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Atomic # 16 Polarization: 115.08 SS G_CDS: -0.36 Total: 114.73 kcal Total: -71.01 -0.43 -71.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367166320.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.021 kcal (2) G-P(sol) polarization free energy of solvation -71.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds