Wall clock time and date at job start Wed Apr 1 2020 02:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46922 * 2 1 4 4 C 1.50698 * 109.47342 * 239.99987 * 2 1 3 5 5 H 1.08005 * 119.99819 * 240.00324 * 4 2 1 6 6 C 1.37875 * 120.00046 * 59.99665 * 4 2 1 7 7 N 1.31518 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48510 * 109.46866 * 90.00390 * 8 6 4 10 10 H 1.48502 * 109.47245 * 210.00175 * 8 6 4 11 11 H 1.48494 * 109.47271 * 330.00312 * 8 6 4 12 12 N 1.46506 * 109.46940 * 119.99690 * 2 1 3 13 13 C 1.46499 * 119.99936 * 60.00125 * 12 2 1 14 14 S 1.65597 * 120.00079 * 239.72164 * 12 2 1 15 15 O 1.42095 * 106.40469 * 203.54076 * 14 12 2 16 16 O 1.42098 * 106.40441 * 336.46418 * 14 12 2 17 17 N 1.65602 * 107.21619 * 90.00287 * 14 12 2 18 18 C 1.47424 * 125.64724 * 269.69122 * 17 14 12 19 19 C 1.55137 * 104.72004 * 155.81808 * 18 17 14 20 20 C 1.55150 * 101.48424 * 37.29690 * 19 18 17 21 21 H 1.08999 * 110.72231 * 82.69781 * 20 19 18 22 22 C 1.50706 * 110.71814 * 205.96721 * 20 19 18 23 23 N 1.30502 * 125.64794 * 53.21486 * 22 20 19 24 24 C 1.34128 * 109.25557 * 179.89396 * 23 22 20 25 25 C 1.34670 * 108.02033 * 0.36938 * 24 23 22 26 26 N 1.35042 * 125.65199 * 233.52302 * 22 20 19 27 27 C 1.46501 * 126.39554 * 359.93800 * 26 22 20 28 28 C 1.47022 * 125.64970 * 89.99816 * 17 14 12 29 29 H 1.09000 * 109.47140 * 300.00300 * 1 2 3 30 30 H 1.09001 * 109.47230 * 59.99444 * 1 2 3 31 31 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 32 32 H 0.96997 * 119.99752 * 179.97438 * 7 6 4 33 33 H 1.09003 * 109.47269 * 89.99349 * 13 12 2 34 34 H 1.08994 * 109.47173 * 210.00167 * 13 12 2 35 35 H 1.09005 * 109.47077 * 330.00338 * 13 12 2 36 36 H 1.09003 * 110.36524 * 274.74582 * 18 17 14 37 37 H 1.09003 * 110.36907 * 37.07448 * 18 17 14 38 38 H 1.09002 * 111.18787 * 279.18805 * 19 18 17 39 39 H 1.09003 * 110.93325 * 155.29079 * 19 18 17 40 40 H 1.07998 * 125.98951 * 180.11789 * 24 23 22 41 41 H 1.07997 * 126.59160 * 179.81207 * 25 24 23 42 42 H 1.09006 * 109.46533 * 90.00267 * 27 26 22 43 43 H 1.08994 * 109.47165 * 209.99601 * 27 26 22 44 44 H 1.08995 * 109.47758 * 330.00562 * 27 26 22 45 45 H 1.08997 * 109.88311 * 300.44753 * 28 17 14 46 46 H 1.09005 * 109.88051 * 61.60561 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3427 -2.1618 -4.4118 10 1 2.4866 -0.1415 -5.1122 11 1 3.6293 -1.7584 -3.7121 12 7 2.0183 -0.6906 1.1963 13 6 1.6643 -2.0931 1.4281 14 16 2.9760 0.1122 2.2828 15 8 3.7150 -0.8826 2.9780 16 8 3.5876 1.1774 1.5683 17 7 1.9715 0.8128 3.3975 18 6 1.3944 2.1662 3.3033 19 6 0.1149 2.1109 4.1788 20 6 0.5789 1.2013 5.3469 21 1 1.1249 1.7793 6.0924 22 6 -0.5968 0.4962 5.9730 23 7 -1.4818 -0.2201 5.3352 24 6 -2.3801 -0.6953 6.2105 25 6 -2.0435 -0.2502 7.4361 26 7 -0.9122 0.5057 7.2860 27 6 -0.1800 1.1957 8.3509 28 6 1.5127 0.1907 4.6481 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 0.7095 1.1617 -3.4844 33 1 2.4156 -2.7377 0.9718 34 1 1.6236 -2.2851 2.5003 35 1 0.6903 -2.3002 0.9847 36 1 2.0936 2.9048 3.6954 37 1 1.1366 2.3976 2.2698 38 1 -0.7145 1.6575 3.6360 39 1 -0.1533 3.1039 4.5396 40 1 -3.2275 -1.3215 5.9734 41 1 -2.5654 -0.4515 8.3600 42 1 -0.5767 2.2040 8.4700 43 1 -0.2956 0.6471 9.2856 44 1 0.8767 1.2496 8.0894 45 1 0.9673 -0.7269 4.4273 46 1 2.3672 -0.0285 5.2884 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367166345.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:36 Heat of formation + Delta-G solvation = 1.125439 kcal Electronic energy + Delta-G solvation = -29397.543424 eV Core-core repulsion = 25450.697922 eV Total energy + Delta-G solvation = -3946.845501 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.151 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.29119 -38.31107 -36.63017 -36.05439 -35.16972 -34.23531 -32.50441 -31.99175 -29.53849 -28.98723 -28.10277 -27.16373 -25.48410 -25.05824 -22.92567 -22.11460 -21.33711 -20.55994 -19.45055 -18.44797 -17.56094 -17.28307 -16.79159 -16.18196 -16.00765 -15.76480 -15.15000 -14.58126 -14.43901 -14.11058 -13.76980 -13.50980 -13.36131 -13.28519 -13.11234 -13.02299 -12.94974 -12.81185 -12.53082 -11.93861 -11.67090 -11.61475 -11.58937 -11.31865 -11.27700 -11.20212 -11.14094 -10.90764 -10.85584 -10.71146 -10.40017 -10.19757 -10.01968 -9.95521 -9.77857 -9.17429 -8.79527 -8.49307 -8.38920 -7.87225 -6.00913 -4.06957 1.18920 1.83186 2.53343 3.01681 3.33096 3.39540 3.44019 3.52397 4.04504 4.24092 4.34715 4.45966 4.48022 4.51010 4.69912 4.72431 4.86710 5.01850 5.06434 5.29145 5.30325 5.35212 5.38375 5.52242 5.61514 5.70065 5.80057 5.88602 5.93741 6.07076 6.24237 6.27632 6.30671 6.45927 6.56075 6.62902 6.75014 6.90065 6.94515 6.95964 7.12423 7.55957 7.72415 7.87085 7.99975 8.12234 8.35525 8.95088 9.58361 11.04734 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.017999 B = 0.003361 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.254793 B = 8328.441379 C = 8843.068992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.268 3.732 3 H 0.057 0.943 4 C -0.518 4.518 5 H 0.062 0.938 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.987 5.987 13 C 0.112 3.888 14 S 2.791 3.209 15 O -0.993 6.993 16 O -0.969 6.969 17 N -1.021 6.021 18 C 0.123 3.877 19 C -0.114 4.114 20 C -0.015 4.015 21 H 0.094 0.906 22 C 0.218 3.782 23 N -0.476 5.476 24 C -0.024 4.024 25 C -0.064 4.064 26 N -0.461 5.461 27 C 0.070 3.930 28 C 0.139 3.861 29 H 0.013 0.987 30 H 0.091 0.909 31 H 0.033 0.967 32 H 0.262 0.738 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.170 0.830 41 H 0.173 0.827 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.074 0.926 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.790 2.253 22.806 23.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.166 3.834 3 H 0.075 0.925 4 C -0.558 4.558 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.830 5.830 13 C -0.034 4.034 14 S 2.802 3.198 15 O -0.977 6.977 16 O -0.953 6.953 17 N -0.859 5.859 18 C -0.002 4.002 19 C -0.153 4.153 20 C -0.037 4.037 21 H 0.112 0.888 22 C -0.045 4.045 23 N -0.194 5.194 24 C -0.173 4.173 25 C -0.196 4.196 26 N -0.144 5.144 27 C -0.073 4.073 28 C 0.012 3.988 29 H 0.032 0.968 30 H 0.110 0.890 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.187 0.813 41 H 0.190 0.810 42 H 0.095 0.905 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.093 0.907 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.780 2.308 21.883 22.517 hybrid contribution -0.330 -0.440 0.203 0.586 sum -5.109 1.868 22.086 22.746 Atomic orbital electron populations 1.22095 0.98110 0.99805 1.00590 1.18729 0.91412 0.92843 0.80454 0.92511 1.21349 1.31455 1.12920 0.90083 0.92008 1.24899 0.95022 0.95022 0.98941 1.69864 1.36676 1.22704 1.23672 0.86504 0.79278 0.79290 0.82377 1.20679 1.21169 1.19872 1.57747 1.69838 1.19844 1.35555 1.21121 1.01638 0.81951 0.98712 1.01644 0.73386 0.72884 0.71905 1.93525 1.69173 1.60164 1.74845 1.93597 1.73604 1.56347 1.71726 1.59385 1.67522 1.24977 1.33987 1.21984 0.93489 0.83363 1.01414 1.22887 0.98676 0.99013 0.94772 1.20590 0.90294 0.95627 0.97151 0.88752 1.22929 0.99419 1.02196 0.79947 1.70269 1.04036 1.12435 1.32630 1.22345 1.01271 1.04710 0.88947 1.22669 0.92655 1.02845 1.01446 1.45323 1.22002 1.38807 1.08276 1.22059 0.97627 0.97797 0.89845 1.21541 0.96418 0.95736 0.85147 0.96815 0.89031 0.94811 0.92775 0.93409 0.93468 0.90924 0.91470 0.89739 0.88801 0.90172 0.81309 0.81008 0.90466 0.89581 0.89329 0.90717 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 8.95 37.16 0.33 -3.11 16 2 C 0.27 6.76 2.62 -69.08 -0.18 6.58 16 3 H 0.06 1.57 6.92 -51.93 -0.36 1.21 16 4 C -0.52 -14.33 8.37 -34.44 -0.29 -14.62 16 5 H 0.06 1.71 7.65 -52.48 -0.40 1.31 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.13 11.32 55.43 0.63 -24.50 16 8 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.99 -21.63 3.12 -115.85 -0.36 -22.00 16 13 C 0.11 2.17 9.53 59.85 0.57 2.74 16 14 S 2.79 57.84 6.31 -107.50 -0.68 57.16 16 15 O -0.99 -21.56 16.79 -57.17 -0.96 -22.52 16 16 O -0.97 -23.17 16.29 -57.17 -0.93 -24.10 16 17 N -1.02 -16.53 3.75 -111.29 -0.42 -16.95 16 18 C 0.12 1.71 6.99 -2.41 -0.02 1.69 16 19 C -0.11 -1.31 6.53 -24.46 -0.16 -1.47 16 20 C -0.02 -0.16 3.27 -89.94 -0.29 -0.46 16 21 H 0.09 0.74 6.88 -51.93 -0.36 0.38 16 22 C 0.22 2.55 6.45 -155.41 -1.00 1.55 16 23 N -0.48 -6.68 10.86 -10.81 -0.12 -6.80 16 24 C -0.02 -0.27 11.87 -17.81 -0.21 -0.49 16 25 C -0.06 -0.57 11.58 -16.56 -0.19 -0.76 16 26 N -0.46 -4.16 3.15 -121.28 -0.38 -4.54 16 27 C 0.07 0.32 10.83 59.85 0.65 0.97 16 28 C 0.14 1.89 6.57 -3.07 -0.02 1.87 16 29 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 31 H 0.03 0.76 6.66 -51.93 -0.35 0.41 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.05 0.80 7.79 -51.93 -0.40 0.39 16 35 H 0.07 1.37 6.43 -51.93 -0.33 1.03 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.09 1.29 7.83 -51.93 -0.41 0.88 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.17 1.55 8.06 -52.49 -0.42 1.12 16 41 H 0.17 0.93 8.06 -52.49 -0.42 0.50 16 42 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.09 0.34 7.13 -51.93 -0.37 -0.03 16 45 H 0.07 1.12 7.71 -51.93 -0.40 0.72 16 46 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 381.94 15.07 5.76 5.76 Total: -1.00 -35.47 381.94 -10.45 -45.93 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -7.06 Total: -0.13 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -0.91 Total: -3.85 kcal Atomic # 7 Polarization: -74.13 SS G_CDS: -0.65 Total: -74.78 kcal Atomic # 8 Polarization: -44.73 SS G_CDS: -1.89 Total: -46.62 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 57.84 SS G_CDS: -0.68 Total: 57.16 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.47 -10.45 -45.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367166345.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.051 kcal (2) G-P(sol) polarization free energy of solvation -35.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds