Wall clock time and date at job start Wed Apr 1 2020 02:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46922 * 2 1 4 4 C 1.50698 * 109.47342 * 239.99987 * 2 1 3 5 5 H 1.08005 * 119.99819 * 240.00324 * 4 2 1 6 6 C 1.37875 * 120.00046 * 59.99665 * 4 2 1 7 7 N 1.31518 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48510 * 109.46866 * 90.00390 * 8 6 4 10 10 H 1.48502 * 109.47245 * 210.00175 * 8 6 4 11 11 H 1.48494 * 109.47271 * 330.00312 * 8 6 4 12 12 N 1.46506 * 109.46940 * 119.99690 * 2 1 3 13 13 C 1.46499 * 119.99936 * 60.00125 * 12 2 1 14 14 S 1.65597 * 120.00079 * 239.72164 * 12 2 1 15 15 O 1.42095 * 106.40469 * 203.54076 * 14 12 2 16 16 O 1.42098 * 106.40441 * 336.46418 * 14 12 2 17 17 N 1.65602 * 107.21619 * 90.00287 * 14 12 2 18 18 C 1.47424 * 125.64724 * 269.69122 * 17 14 12 19 19 C 1.55137 * 104.72004 * 155.81808 * 18 17 14 20 20 C 1.55150 * 101.48424 * 37.29690 * 19 18 17 21 21 H 1.08999 * 110.72231 * 82.69781 * 20 19 18 22 22 C 1.50706 * 110.71814 * 205.96721 * 20 19 18 23 23 N 1.30502 * 125.64794 * 53.21486 * 22 20 19 24 24 C 1.34128 * 109.25557 * 179.89396 * 23 22 20 25 25 C 1.34670 * 108.02033 * 0.36938 * 24 23 22 26 26 N 1.35042 * 125.65199 * 233.52302 * 22 20 19 27 27 C 1.46501 * 126.39554 * 359.93800 * 26 22 20 28 28 C 1.47022 * 125.64970 * 89.99816 * 17 14 12 29 29 H 1.09000 * 109.47140 * 300.00300 * 1 2 3 30 30 H 1.09001 * 109.47230 * 59.99444 * 1 2 3 31 31 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 32 32 H 0.96997 * 119.99752 * 179.97438 * 7 6 4 33 33 H 1.09003 * 109.47269 * 89.99349 * 13 12 2 34 34 H 1.08994 * 109.47173 * 210.00167 * 13 12 2 35 35 H 1.09005 * 109.47077 * 330.00338 * 13 12 2 36 36 H 1.09003 * 110.36524 * 274.74582 * 18 17 14 37 37 H 1.09003 * 110.36907 * 37.07448 * 18 17 14 38 38 H 1.09002 * 111.18787 * 279.18805 * 19 18 17 39 39 H 1.09003 * 110.93325 * 155.29079 * 19 18 17 40 40 H 1.07998 * 125.98951 * 180.11789 * 24 23 22 41 41 H 1.07997 * 126.59160 * 179.81207 * 25 24 23 42 42 H 1.09006 * 109.46533 * 90.00267 * 27 26 22 43 43 H 1.08994 * 109.47165 * 209.99601 * 27 26 22 44 44 H 1.08995 * 109.47758 * 330.00562 * 27 26 22 45 45 H 1.08997 * 109.88311 * 300.44753 * 28 17 14 46 46 H 1.09005 * 109.88051 * 61.60561 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3427 -2.1618 -4.4118 10 1 2.4866 -0.1415 -5.1122 11 1 3.6293 -1.7584 -3.7121 12 7 2.0183 -0.6906 1.1963 13 6 1.6643 -2.0931 1.4281 14 16 2.9760 0.1122 2.2828 15 8 3.7150 -0.8826 2.9780 16 8 3.5876 1.1774 1.5683 17 7 1.9715 0.8128 3.3975 18 6 1.3944 2.1662 3.3033 19 6 0.1149 2.1109 4.1788 20 6 0.5789 1.2013 5.3469 21 1 1.1249 1.7793 6.0924 22 6 -0.5968 0.4962 5.9730 23 7 -1.4818 -0.2201 5.3352 24 6 -2.3801 -0.6953 6.2105 25 6 -2.0435 -0.2502 7.4361 26 7 -0.9122 0.5057 7.2860 27 6 -0.1800 1.1957 8.3509 28 6 1.5127 0.1907 4.6481 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 0.7095 1.1617 -3.4844 33 1 2.4156 -2.7377 0.9718 34 1 1.6236 -2.2851 2.5003 35 1 0.6903 -2.3002 0.9847 36 1 2.0936 2.9048 3.6954 37 1 1.1366 2.3976 2.2698 38 1 -0.7145 1.6575 3.6360 39 1 -0.1533 3.1039 4.5396 40 1 -3.2275 -1.3215 5.9734 41 1 -2.5654 -0.4515 8.3600 42 1 -0.5767 2.2040 8.4700 43 1 -0.2956 0.6471 9.2856 44 1 0.8767 1.2496 8.0894 45 1 0.9673 -0.7269 4.4273 46 1 2.3672 -0.0285 5.2884 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367166345.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:35 Heat of formation + Delta-G solvation = -23.767099 kcal Electronic energy + Delta-G solvation = -29398.622845 eV Core-core repulsion = 25450.697922 eV Total energy + Delta-G solvation = -3947.924923 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.151 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.01726 -39.38293 -38.38419 -37.90061 -36.93074 -34.86249 -34.53526 -33.00577 -30.94852 -30.53234 -28.95493 -27.67949 -27.30618 -27.02168 -24.00802 -23.13008 -22.43373 -22.06190 -20.25210 -19.96009 -18.92010 -18.69741 -18.25946 -17.92627 -17.25696 -16.69126 -16.45796 -16.30294 -15.38946 -15.25686 -15.16695 -14.79488 -14.74447 -14.54524 -14.23648 -14.11647 -13.83979 -13.73749 -13.65785 -13.41201 -13.34908 -13.26813 -13.18342 -13.02240 -12.80261 -12.74182 -12.60768 -12.48509 -12.31376 -12.24898 -12.17041 -11.91969 -11.77670 -11.16528 -10.81626 -10.51344 -10.47694 -10.05845 -9.67282 -9.24985 -8.11629 -6.25433 -0.42692 1.12337 1.42078 1.43398 1.53576 1.91269 2.02552 2.20528 2.42562 2.55309 3.15969 3.16191 3.37878 3.63316 3.75331 3.92576 4.01629 4.06582 4.22729 4.31966 4.39021 4.49501 4.55187 4.63814 4.66046 4.73152 4.75205 4.78268 4.82822 4.90463 4.94360 4.96788 5.00521 5.08471 5.12689 5.15180 5.29251 5.34845 5.44527 5.60604 5.76261 5.86560 5.91066 6.12137 6.29519 6.30707 6.81333 7.24820 7.43168 8.92714 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.017999 B = 0.003361 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.254793 B = 8328.441379 C = 8843.068992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.276 3.724 3 H 0.026 0.974 4 C -0.541 4.541 5 H 0.055 0.945 6 C 0.018 3.982 7 N -0.912 5.912 8 Si 0.957 3.043 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.275 1.275 12 N -0.998 5.998 13 C 0.109 3.891 14 S 2.806 3.194 15 O -1.005 7.005 16 O -1.006 7.006 17 N -1.017 6.017 18 C 0.114 3.886 19 C -0.104 4.104 20 C -0.002 4.002 21 H 0.134 0.866 22 C 0.199 3.801 23 N -0.524 5.524 24 C -0.063 4.063 25 C -0.043 4.043 26 N -0.456 5.456 27 C 0.059 3.941 28 C 0.132 3.868 29 H 0.030 0.970 30 H 0.068 0.932 31 H 0.037 0.963 32 H 0.265 0.735 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.113 0.887 40 H 0.176 0.824 41 H 0.210 0.790 42 H 0.093 0.907 43 H 0.107 0.893 44 H 0.099 0.901 45 H 0.057 0.943 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.136 2.540 25.479 26.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.172 3.828 3 H 0.044 0.956 4 C -0.581 4.581 5 H 0.073 0.927 6 C -0.182 4.182 7 N -0.551 5.551 8 Si 0.783 3.217 9 H -0.195 1.195 10 H -0.206 1.206 11 H -0.200 1.200 12 N -0.839 5.839 13 C -0.037 4.037 14 S 2.817 3.183 15 O -0.989 6.989 16 O -0.991 6.991 17 N -0.858 5.858 18 C -0.011 4.011 19 C -0.144 4.144 20 C -0.024 4.024 21 H 0.152 0.848 22 C -0.064 4.064 23 N -0.243 5.243 24 C -0.210 4.210 25 C -0.177 4.177 26 N -0.138 5.138 27 C -0.082 4.082 28 C 0.006 3.994 29 H 0.049 0.951 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.132 0.868 40 H 0.193 0.807 41 H 0.226 0.774 42 H 0.111 0.889 43 H 0.125 0.875 44 H 0.117 0.883 45 H 0.075 0.925 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.115 2.587 24.573 25.233 hybrid contribution -0.264 -0.517 -0.492 0.761 sum -5.378 2.070 24.081 24.761 Atomic orbital electron populations 1.21869 0.97032 0.99881 1.00217 1.18386 0.92052 0.91301 0.81098 0.95597 1.21642 1.31812 1.13067 0.91538 0.92712 1.25647 0.95175 0.95722 1.01636 1.69975 1.37191 1.23573 1.24390 0.85577 0.78745 0.78451 0.78975 1.19526 1.20642 1.19982 1.57696 1.69887 1.20964 1.35396 1.21249 1.01556 0.80629 1.00245 1.00915 0.73400 0.72163 0.71803 1.93496 1.69948 1.60655 1.74826 1.93541 1.74995 1.57464 1.73058 1.58967 1.67047 1.25921 1.33903 1.22253 0.95291 0.82523 1.00987 1.22801 0.96304 1.00817 0.94430 1.20580 0.89785 0.94640 0.97371 0.84841 1.22868 0.99514 1.02817 0.81194 1.70167 1.05507 1.13867 1.34784 1.22672 1.02009 1.06353 0.89991 1.23200 0.91944 1.00734 1.01806 1.45562 1.21881 1.38201 1.08197 1.22433 0.97853 0.98559 0.89313 1.21759 0.97495 0.95968 0.84200 0.95130 0.91314 0.94377 0.92563 0.93738 0.91151 0.90717 0.88861 0.92090 0.91486 0.86843 0.80725 0.77377 0.88863 0.87478 0.88277 0.92485 0.89917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.30 8.95 71.98 0.64 -5.65 16 2 C 0.28 14.33 2.62 44.24 0.12 14.45 16 3 H 0.03 1.51 6.92 -2.39 -0.02 1.50 16 4 C -0.54 -30.63 8.37 25.60 0.21 -30.41 16 5 H 0.05 3.09 7.65 -2.91 -0.02 3.07 16 6 C 0.02 1.02 5.30 84.65 0.45 1.47 16 7 N -0.91 -52.47 11.32 21.45 0.24 -52.23 16 8 Si 0.96 44.57 29.54 68.60 2.03 46.60 16 9 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 12 N -1.00 -44.77 3.12 -520.44 -1.62 -46.39 16 13 C 0.11 4.25 9.53 127.77 1.22 5.47 16 14 S 2.81 118.10 6.31 -56.49 -0.36 117.74 16 15 O -1.01 -43.65 16.79 -128.00 -2.15 -45.80 16 16 O -1.01 -49.61 16.29 -128.00 -2.08 -51.69 16 17 N -1.02 -32.58 3.75 -506.00 -1.90 -34.48 16 18 C 0.11 3.09 6.99 86.94 0.61 3.69 16 19 C -0.10 -2.23 6.53 32.06 0.21 -2.02 16 20 C 0.00 -0.05 3.27 -10.35 -0.03 -0.08 16 21 H 0.13 1.50 6.88 -2.39 -0.02 1.49 16 22 C 0.20 4.28 6.45 138.13 0.89 5.18 16 23 N -0.52 -14.52 10.86 -188.13 -2.04 -16.56 16 24 C -0.06 -1.37 11.87 83.52 0.99 -0.37 16 25 C -0.04 -0.65 11.58 83.09 0.96 0.32 16 26 N -0.46 -6.77 3.15 -537.61 -1.69 -8.47 16 27 C 0.06 0.29 10.83 127.77 1.38 1.67 16 28 C 0.13 3.43 6.57 86.73 0.57 4.00 16 29 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.07 3.65 6.07 -2.39 -0.01 3.63 16 31 H 0.04 1.75 6.66 -2.39 -0.02 1.73 16 32 H 0.27 14.43 8.31 -92.71 -0.77 13.65 16 33 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.07 2.37 7.79 -2.39 -0.02 2.36 16 35 H 0.07 2.84 6.43 -2.38 -0.02 2.83 16 36 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.07 1.83 7.83 -2.39 -0.02 1.81 16 39 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.18 3.21 8.06 -2.91 -0.02 3.19 16 41 H 0.21 1.38 8.06 -2.91 -0.02 1.36 16 42 H 0.09 0.22 8.14 -2.38 -0.02 0.20 16 43 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 44 H 0.10 0.30 7.13 -2.39 -0.02 0.29 16 45 H 0.06 1.69 7.71 -2.39 -0.02 1.67 16 46 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 Total: -1.00 -79.29 381.94 -0.39 -79.68 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.97 Total: 13.91 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: 8.22 Total: -2.30 kcal Atomic # 7 Polarization: -151.11 SS G_CDS: -7.02 Total: -158.13 kcal Atomic # 8 Polarization: -93.26 SS G_CDS: -4.23 Total: -97.49 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 16 Polarization: 118.10 SS G_CDS: -0.36 Total: 117.74 kcal Total: -79.29 -0.39 -79.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367166345.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.908 kcal (2) G-P(sol) polarization free energy of solvation -79.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds