Wall clock time and date at job start Wed Apr 1 2020 01:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.87473 * 2 1 4 4 C 1.54328 * 109.88494 * 238.82703 * 2 1 3 5 5 H 1.09007 * 110.71513 * 336.75055 * 4 2 1 6 6 N 1.46493 * 110.72152 * 100.02131 * 4 2 1 7 7 C 1.34777 * 120.00328 * 205.00007 * 6 4 2 8 8 O 1.21589 * 119.99760 * 0.02562 * 7 6 4 9 9 C 1.47605 * 120.00556 * 180.02562 * 7 6 4 10 10 N 1.32559 * 120.89702 * 359.72360 * 9 7 6 11 11 N 1.28021 * 123.10504 * 179.68806 * 10 9 7 12 12 C 1.32284 * 124.11753 * 0.61830 * 11 10 9 13 13 O 1.35281 * 120.22223 * 179.72156 * 12 11 10 14 14 C 1.41100 * 119.55065 * 359.69918 * 12 11 10 15 15 C 1.39957 * 122.89394 * 180.02562 * 14 12 11 16 16 C 1.36388 * 119.36488 * 179.97438 * 15 14 12 17 17 C 1.39263 * 121.07944 * 359.97438 * 16 15 14 18 18 C 1.36476 * 121.02164 * 0.07227 * 17 16 15 19 19 C 1.39642 * 119.34004 * 359.90096 * 18 17 16 20 20 C 1.55155 * 102.94193 * 218.39140 * 4 2 1 21 21 C 1.54906 * 101.58328 * 35.49714 * 20 4 2 22 22 N 1.47019 * 109.88752 * 121.01638 * 2 1 3 23 23 C 1.36944 * 125.64743 * 298.32772 * 22 2 1 24 24 H 1.08002 * 119.99783 * 359.97438 * 23 22 2 25 25 C 1.38808 * 120.00111 * 179.97438 * 23 22 2 26 26 N 1.31620 * 119.99980 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 120.00090 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.47202 * 0.02562 * 27 25 23 29 29 H 1.48499 * 109.47109 * 119.99845 * 27 25 23 30 30 H 1.48497 * 109.47449 * 239.99751 * 27 25 23 31 31 H 1.09002 * 109.47153 * 300.43629 * 1 2 3 32 32 H 1.09001 * 109.46832 * 180.43820 * 1 2 3 33 33 H 1.09004 * 109.47261 * 60.43801 * 1 2 3 34 34 H 0.97001 * 120.00414 * 25.00826 * 6 4 2 35 35 H 0.96709 * 113.99935 * 269.97887 * 13 12 11 36 36 H 1.08003 * 120.31530 * 359.97438 * 15 14 12 37 37 H 1.07994 * 119.45788 * 180.02562 * 16 15 14 38 38 H 1.08002 * 119.48683 * 180.02562 * 17 16 15 39 39 H 1.08002 * 120.33485 * 179.97438 * 18 17 16 40 40 H 1.09003 * 110.99799 * 277.42087 * 20 4 2 41 41 H 1.08999 * 111.03442 * 153.58709 * 20 4 2 42 42 H 1.09001 * 110.36496 * 204.15090 * 21 20 4 43 43 H 1.09002 * 110.36576 * 81.83622 * 21 20 4 44 44 H 0.97002 * 120.00225 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0252 0.0000 4 6 2.0549 -0.7512 -1.2417 5 1 1.3051 -1.4482 -1.6163 6 7 2.4554 0.1929 -2.2878 7 6 2.4582 -0.1932 -3.5790 8 8 2.1278 -1.3251 -3.8758 9 6 2.8622 0.7578 -4.6330 10 7 3.2205 1.9976 -4.3302 11 7 3.5837 2.8549 -5.2089 12 6 3.6323 2.6107 -6.5081 13 8 4.0234 3.5784 -7.3687 14 6 3.2738 1.3339 -6.9901 15 6 3.3000 0.9995 -8.3488 16 6 2.9390 -0.2577 -8.7352 17 6 2.5459 -1.2121 -7.8003 18 6 2.5085 -0.9180 -6.4682 19 6 2.8726 0.3600 -6.0391 20 6 3.2876 -1.5152 -0.6903 21 6 2.8145 -1.8783 0.7394 22 7 2.0301 -0.7124 1.1848 23 6 1.8050 -0.3522 2.4867 24 1 1.2148 0.5243 2.7102 25 6 2.3354 -1.1135 3.5192 26 7 3.0543 -2.1819 3.2468 27 14 2.0290 -0.6217 5.2950 28 1 1.1969 0.6078 5.3316 29 1 1.3188 -1.7205 5.9974 30 1 3.3271 -0.3618 5.9677 31 1 -0.3633 0.5206 0.8861 32 1 -0.3633 -1.0277 0.0079 33 1 -0.3634 0.5070 -0.8939 34 1 2.7188 1.0960 -2.0512 35 1 3.2987 4.1260 -7.7006 36 1 3.6032 1.7300 -9.0843 37 1 2.9590 -0.5175 -9.7833 38 1 2.2656 -2.2000 -8.1348 39 1 2.2015 -1.6666 -5.7527 40 1 4.1654 -0.8697 -0.6593 41 1 3.4858 -2.4128 -1.2761 42 1 3.6717 -2.0318 1.3950 43 1 2.1887 -2.7705 0.7167 44 1 3.4246 -2.7141 3.9683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088998024.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:34:22 Heat of formation + Delta-G solvation = 38.011016 kcal Electronic energy + Delta-G solvation = -29190.275024 eV Core-core repulsion = 25109.585050 eV Total energy + Delta-G solvation = -4080.689974 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.148 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.76363 -39.74674 -38.54779 -38.06855 -37.51785 -34.19345 -32.77630 -32.06148 -32.00873 -30.69118 -30.34547 -28.61822 -26.14887 -24.65097 -24.59777 -23.99330 -23.00340 -21.32273 -20.25688 -19.94871 -19.53807 -18.98768 -18.16500 -17.30424 -16.81255 -16.38860 -16.04914 -15.37670 -15.17549 -14.99365 -14.75654 -14.60774 -14.09850 -13.99550 -13.83550 -13.36554 -13.02493 -12.81635 -12.78393 -12.60541 -12.15879 -12.06595 -11.98328 -11.94736 -11.57122 -11.14301 -10.87150 -10.83531 -10.66208 -10.59294 -10.44403 -10.06667 -9.93662 -9.79344 -9.75948 -9.74095 -9.57061 -8.93090 -8.70135 -8.63310 -6.87423 -5.65437 -3.08089 -0.49550 0.18346 1.13865 2.16608 2.81897 2.89220 2.94458 3.40384 3.46012 3.48366 3.52997 3.65222 4.03233 4.10562 4.30777 4.46091 4.50668 4.65660 4.77178 4.98006 5.17167 5.19566 5.28943 5.41588 5.49086 5.52285 5.60540 5.68427 5.78592 5.89391 5.94733 6.12684 6.19352 6.26836 6.31675 6.35026 6.49381 6.58563 6.68458 6.80942 6.84960 7.06730 7.48446 7.55582 7.63457 7.84861 8.11316 8.33962 8.35159 9.20846 9.81607 10.44918 11.38168 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.022693 B = 0.002404 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.565935 B =11644.445710 C =12304.666979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.154 3.846 3 H 0.039 0.961 4 C 0.131 3.869 5 H 0.099 0.901 6 N -0.685 5.685 7 C 0.579 3.421 8 O -0.529 6.529 9 C 0.064 3.936 10 N -0.199 5.199 11 N -0.286 5.286 12 C 0.321 3.679 13 O -0.468 6.468 14 C -0.106 4.106 15 C -0.087 4.087 16 C -0.100 4.100 17 C -0.095 4.095 18 C -0.088 4.088 19 C -0.033 4.033 20 C -0.154 4.154 21 C 0.153 3.847 22 N -0.595 5.595 23 C -0.218 4.218 24 H 0.079 0.921 25 C -0.011 4.011 26 N -0.921 5.921 27 Si 0.914 3.086 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.291 1.291 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.038 0.962 34 H 0.411 0.589 35 H 0.410 0.590 36 H 0.142 0.858 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.175 0.825 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.110 0.890 43 H 0.015 0.985 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.076 5.834 -26.525 27.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.046 3.954 3 H 0.057 0.943 4 C 0.027 3.973 5 H 0.117 0.883 6 N -0.334 5.334 7 C 0.362 3.638 8 O -0.406 6.406 9 C -0.096 4.096 10 N -0.037 5.037 11 N -0.129 5.129 12 C 0.125 3.875 13 O -0.274 6.274 14 C -0.113 4.113 15 C -0.107 4.107 16 C -0.119 4.119 17 C -0.115 4.115 18 C -0.107 4.107 19 C -0.041 4.041 20 C -0.193 4.193 21 C 0.028 3.972 22 N -0.320 5.320 23 C -0.347 4.347 24 H 0.097 0.903 25 C -0.206 4.206 26 N -0.570 5.570 27 Si 0.745 3.255 28 H -0.205 1.205 29 H -0.218 1.218 30 H -0.218 1.218 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.247 0.753 35 H 0.270 0.730 36 H 0.160 0.840 37 H 0.152 0.848 38 H 0.155 0.845 39 H 0.192 0.808 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.128 0.872 43 H 0.034 0.966 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.450 5.968 -25.189 25.890 hybrid contribution -0.619 -0.007 -0.341 0.707 sum -1.069 5.961 -25.530 26.238 Atomic orbital electron populations 1.22244 0.97765 1.01400 1.00079 1.21006 0.92695 0.94993 0.86695 0.94305 1.22327 0.98046 0.90724 0.86170 0.88304 1.45991 1.65109 1.17090 1.05244 1.17194 0.78593 0.85882 0.82171 1.90658 1.49077 1.19282 1.81559 1.24326 0.98482 0.93940 0.92884 1.72899 1.05893 0.99224 1.25667 1.72398 1.13840 1.26760 0.99885 1.21066 0.90098 0.87420 0.88964 1.84629 1.36988 1.46421 1.59353 1.18991 1.02430 0.94289 0.95637 1.20875 0.98690 0.97624 0.93520 1.21179 0.97103 0.93076 1.00567 1.21329 0.97080 1.00083 0.92971 1.21909 0.95690 0.95758 0.97341 1.19513 0.98306 0.95184 0.91077 1.23435 0.96669 0.99327 0.99909 1.21952 0.97435 0.88405 0.89382 1.44489 1.59251 1.28212 1.00061 1.19075 1.27058 1.08089 0.80440 0.90348 1.24784 1.00387 0.97400 0.98060 1.69798 1.39271 1.17870 1.30031 0.86004 0.77352 0.77531 0.84636 1.20535 1.21807 1.21764 0.92574 0.92897 0.94315 0.75273 0.72974 0.83998 0.84755 0.84507 0.80766 0.91757 0.91812 0.87243 0.96650 0.93749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.14 37.16 0.34 -2.53 16 2 C 0.15 3.09 3.48 -66.95 -0.23 2.86 16 3 H 0.04 0.78 7.72 -51.92 -0.40 0.37 16 4 C 0.13 2.36 2.84 -66.10 -0.19 2.17 16 5 H 0.10 1.83 7.26 -51.92 -0.38 1.45 16 6 N -0.69 -10.65 5.17 -53.05 -0.27 -10.93 16 7 C 0.58 8.86 7.80 -12.44 -0.10 8.76 16 8 O -0.53 -8.78 13.39 5.29 0.07 -8.71 16 9 C 0.06 0.89 7.05 -80.57 -0.57 0.33 16 10 N -0.20 -2.86 10.71 34.49 0.37 -2.50 16 11 N -0.29 -3.89 11.40 30.80 0.35 -3.54 16 12 C 0.32 3.45 7.90 -16.27 -0.13 3.32 16 13 O -0.47 -3.52 12.94 -17.54 -0.23 -3.75 16 14 C -0.11 -1.08 5.76 -106.76 -0.61 -1.70 16 15 C -0.09 -0.62 9.63 -39.60 -0.38 -1.00 16 16 C -0.10 -0.62 9.95 -39.87 -0.40 -1.02 16 17 C -0.10 -0.72 9.96 -39.84 -0.40 -1.11 16 18 C -0.09 -0.94 9.33 -39.69 -0.37 -1.31 16 19 C -0.03 -0.40 5.90 -104.80 -0.62 -1.02 16 20 C -0.15 -3.00 6.77 -24.59 -0.17 -3.17 16 21 C 0.15 3.68 5.89 -2.53 -0.01 3.67 16 22 N -0.59 -14.71 3.13 -162.57 -0.51 -15.21 16 23 C -0.22 -5.91 9.87 -15.06 -0.15 -6.06 16 24 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 25 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 26 N -0.92 -26.52 10.09 55.49 0.56 -25.96 16 27 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 28 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 29 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 30 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 31 H 0.06 1.07 8.03 -51.93 -0.42 0.66 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.41 6.01 7.76 -40.82 -0.32 5.70 16 35 H 0.41 0.84 9.06 45.56 0.41 1.25 16 36 H 0.14 0.64 7.75 -52.48 -0.41 0.23 16 37 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 38 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 39 H 0.18 2.08 5.28 -52.49 -0.28 1.80 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.11 2.96 5.88 -51.93 -0.31 2.65 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 366.15 15.07 5.52 5.52 Total: -1.00 -32.89 366.15 -7.84 -40.73 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -4.59 Total: 5.68 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -4.08 Total: 1.79 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: 0.50 Total: -58.14 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -0.16 Total: -12.46 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.89 -7.84 -40.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088998024.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.741 kcal (2) G-P(sol) polarization free energy of solvation -32.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds