Wall clock time and date at job start Wed Apr 1 2020 01:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47285 * 2 1 4 4 C 1.46496 * 120.00520 * 274.94505 * 3 2 1 5 5 C 1.50696 * 109.47400 * 263.11469 * 4 3 2 6 6 H 1.07998 * 119.99842 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00156 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99917 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99892 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47386 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47306 * 119.99841 * 9 7 5 12 12 H 1.48503 * 109.47020 * 239.99627 * 9 7 5 13 13 C 1.34780 * 120.00107 * 94.94448 * 3 2 1 14 14 O 1.21364 * 119.99583 * 3.68845 * 13 3 2 15 15 C 1.49322 * 120.00462 * 183.69177 * 13 3 2 16 16 O 1.21401 * 119.99819 * 354.26714 * 15 13 3 17 17 N 1.34777 * 120.00155 * 174.25951 * 15 13 3 18 18 C 1.40445 * 120.00092 * 179.97438 * 17 15 13 19 19 C 1.40396 * 126.09020 * 0.02562 * 18 17 15 20 20 N 1.30839 * 108.35555 * 179.71354 * 19 18 17 21 21 N 1.40062 * 108.41285 * 0.44389 * 20 19 18 22 22 C 1.40148 * 126.05298 * 179.81455 * 21 20 19 23 23 C 1.38846 * 120.06816 * 179.66688 * 22 21 20 24 24 C 1.38118 * 119.93374 * 179.97438 * 23 22 21 25 25 C 1.38277 * 120.06740 * 0.02562 * 24 23 22 26 26 C 1.38278 * 120.13744 * 0.02562 * 25 24 23 27 27 C 1.38118 * 120.06662 * 359.97438 * 26 25 24 28 28 C 1.35859 * 126.09541 * 180.02562 * 18 17 15 29 29 H 1.08995 * 109.47178 * 300.00097 * 1 2 3 30 30 H 1.08999 * 109.47177 * 59.99636 * 1 2 3 31 31 H 1.08993 * 109.47080 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47050 * 240.00507 * 2 1 3 33 33 H 1.08999 * 109.47177 * 120.00364 * 2 1 3 34 34 H 1.09006 * 109.46730 * 23.11259 * 4 3 2 35 35 H 1.08996 * 109.47672 * 143.10888 * 4 3 2 36 36 H 0.97001 * 119.99440 * 179.97438 * 8 7 5 37 37 H 0.97000 * 119.99932 * 0.02562 * 17 15 13 38 38 H 1.07992 * 125.81823 * 359.97438 * 19 18 17 39 39 H 1.07997 * 120.03634 * 0.02562 * 23 22 21 40 40 H 1.07999 * 119.96670 * 180.27833 * 24 23 22 41 41 H 1.07999 * 119.93440 * 180.02562 * 25 24 23 42 42 H 1.08000 * 119.97336 * 179.97438 * 26 25 24 43 43 H 1.08004 * 120.03556 * 179.97438 * 27 26 25 44 44 H 1.08000 * 126.23571 * 359.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1595 2.1083 -1.2639 5 6 3.5889 2.0259 -1.7341 6 1 4.3192 1.4861 -1.1496 7 6 3.9642 2.6394 -2.9104 8 7 3.0746 3.2962 -3.6223 9 14 5.7362 2.5377 -3.4927 10 1 6.5326 1.7479 -2.5195 11 1 5.7832 1.8782 -4.8224 12 1 6.3016 3.9068 -3.5990 13 6 2.3379 1.9830 1.1629 14 8 2.2850 1.3600 2.2031 15 6 2.7568 3.4163 1.1715 16 8 2.9103 4.0101 0.1238 17 7 2.9643 4.0507 2.3423 18 6 3.3589 5.3986 2.3504 19 6 3.5730 6.2044 1.2208 20 7 3.9235 7.3979 1.6266 21 7 3.9565 7.3972 3.0268 22 6 4.2905 8.4852 3.8445 23 6 4.2761 8.3474 5.2261 24 6 4.6063 9.4214 6.0293 25 6 4.9504 10.6331 5.4590 26 6 4.9646 10.7739 4.0834 27 6 4.6354 9.7036 3.2749 28 6 3.6013 6.1550 3.4526 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.5043 1.6645 -2.0135 35 1 1.8857 3.1528 -1.1148 36 1 3.3388 3.7282 -4.4497 37 1 2.8419 3.5762 3.1794 38 1 3.4627 5.8934 0.1926 39 1 4.0079 7.4012 5.6722 40 1 4.5996 9.3135 7.1039 41 1 5.2085 11.4714 6.0891 42 1 5.2333 11.7217 3.6408 43 1 4.6463 9.8142 2.2006 44 1 3.5254 5.8295 4.4796 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123942921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:06 Heat of formation + Delta-G solvation = 64.925312 kcal Electronic energy + Delta-G solvation = -28920.361672 eV Core-core repulsion = 24840.838790 eV Total energy + Delta-G solvation = -4079.522883 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.64154 -40.13425 -39.14373 -37.89721 -35.79403 -34.44534 -33.15354 -32.65880 -31.39436 -30.51126 -29.79503 -28.58805 -27.06579 -25.00670 -23.48328 -23.20424 -23.04636 -21.99766 -21.10822 -20.21444 -19.12174 -18.24282 -17.18007 -16.63718 -16.48758 -16.18105 -15.62796 -15.50615 -15.36966 -14.98774 -14.81153 -14.53471 -14.18827 -13.87502 -13.84353 -13.78243 -13.44020 -13.01511 -12.89896 -12.80237 -12.37278 -12.06017 -11.91922 -11.68505 -11.57306 -11.50149 -10.97764 -10.93680 -10.81598 -10.77909 -10.60255 -10.45221 -10.09900 -9.96967 -9.65496 -9.31557 -8.76923 -8.75519 -8.28231 -7.87134 -7.52486 -6.02985 -4.05640 0.63679 1.03918 1.84574 2.19315 2.20870 2.90865 2.92117 3.30992 3.39389 3.42720 3.53729 3.91242 4.09983 4.37273 4.46106 4.54886 4.67930 4.78375 4.89948 4.98729 5.06789 5.22137 5.33475 5.34615 5.47809 5.51226 5.58037 5.67214 5.71748 5.77915 6.04514 6.09166 6.14759 6.19944 6.25301 6.29343 6.48264 6.53225 6.68449 6.90964 7.07719 7.32861 7.41792 7.48707 7.67589 7.86472 8.09245 8.19553 8.34412 8.64367 8.96409 9.57650 11.05668 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.012541 B = 0.002867 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.070755 B = 9764.060629 C =11456.908296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.108 3.892 3 N -0.556 5.556 4 C 0.221 3.779 5 C -0.518 4.518 6 H 0.054 0.946 7 C 0.070 3.930 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.511 3.489 14 O -0.563 6.563 15 C 0.495 3.505 16 O -0.442 6.442 17 N -0.632 5.632 18 C 0.035 3.965 19 C 0.071 3.929 20 N -0.278 5.278 21 N -0.328 5.328 22 C 0.179 3.821 23 C -0.148 4.148 24 C -0.092 4.092 25 C -0.139 4.139 26 C -0.094 4.094 27 C -0.126 4.126 28 C 0.002 3.998 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.032 0.968 35 H 0.076 0.924 36 H 0.262 0.738 37 H 0.417 0.583 38 H 0.220 0.780 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.126 0.874 42 H 0.130 0.870 43 H 0.139 0.861 44 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.671 8.771 17.418 19.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.015 4.015 3 N -0.286 5.286 4 C 0.102 3.898 5 C -0.557 4.557 6 H 0.072 0.928 7 C -0.133 4.133 8 N -0.527 5.527 9 Si 0.720 3.280 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.209 1.209 13 C 0.293 3.707 14 O -0.445 6.445 15 C 0.277 3.723 16 O -0.311 6.311 17 N -0.280 5.280 18 C -0.070 4.070 19 C -0.118 4.118 20 N -0.097 5.097 21 N -0.106 5.106 22 C 0.086 3.914 23 C -0.169 4.169 24 C -0.111 4.111 25 C -0.158 4.158 26 C -0.112 4.112 27 C -0.146 4.146 28 C -0.141 4.141 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.253 0.747 38 H 0.236 0.764 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.144 0.856 42 H 0.148 0.852 43 H 0.156 0.844 44 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -0.310 10.080 16.559 19.389 hybrid contribution 0.757 -1.178 0.184 1.412 sum 0.448 8.903 16.744 18.969 Atomic orbital electron populations 1.22110 0.96199 1.01635 1.02243 1.21451 0.93847 0.82959 1.03226 1.48305 1.58641 1.13444 1.08238 1.20115 0.97726 0.94061 0.77901 1.21253 0.94185 1.33570 1.06671 0.92759 1.24797 0.97211 0.94860 0.96413 1.69925 1.33514 1.34300 1.14999 0.86546 0.85161 0.77883 0.78434 1.19948 1.21069 1.20872 1.19593 0.79561 0.87039 0.84512 1.90649 1.55684 1.66010 1.32133 1.20382 0.79839 0.88680 0.83390 1.90815 1.44261 1.66355 1.29639 1.42562 1.67294 1.08098 1.10080 1.17763 1.09485 0.86380 0.93356 1.24998 0.96774 0.88482 1.01529 1.77485 1.23461 1.21554 0.87159 1.45459 1.52947 1.07421 1.04798 1.17524 0.99177 0.85995 0.88737 1.20824 1.04716 1.00593 0.90754 1.20945 0.98092 0.92299 0.99749 1.21188 1.01689 0.97870 0.95077 1.21067 0.98315 0.98338 0.93508 1.20953 1.01124 0.91065 1.01464 1.21796 1.07583 0.85644 0.99066 0.92845 0.92139 0.91967 0.89914 0.90346 0.94985 0.90678 0.92871 0.74661 0.76405 0.85250 0.85193 0.85642 0.85200 0.84353 0.80302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 10.24 37.16 0.38 -2.02 16 2 C 0.11 1.87 6.18 -4.04 -0.02 1.85 16 3 N -0.56 -11.57 2.48 -175.62 -0.44 -12.00 16 4 C 0.22 5.35 4.79 -5.20 -0.02 5.33 16 5 C -0.52 -13.91 8.31 -34.44 -0.29 -14.20 16 6 H 0.05 1.49 7.81 -52.49 -0.41 1.08 16 7 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16 8 N -0.89 -25.37 13.29 55.43 0.74 -24.64 16 9 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 10 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 13 C 0.51 10.36 7.66 -11.64 -0.09 10.27 16 14 O -0.56 -11.33 15.98 5.48 0.09 -11.24 16 15 C 0.50 9.71 7.73 -11.65 -0.09 9.62 16 16 O -0.44 -9.95 9.52 5.45 0.05 -9.90 16 17 N -0.63 -9.99 5.45 -10.48 -0.06 -10.05 16 18 C 0.03 0.54 6.90 -83.95 -0.58 -0.04 16 19 C 0.07 1.26 10.84 -17.16 -0.19 1.08 16 20 N -0.28 -4.73 11.86 30.73 0.36 -4.36 16 21 N -0.33 -4.71 3.82 -10.39 -0.04 -4.75 16 22 C 0.18 2.18 6.69 -83.60 -0.56 1.62 16 23 C -0.15 -1.38 9.46 -39.40 -0.37 -1.75 16 24 C -0.09 -0.70 10.04 -39.61 -0.40 -1.10 16 25 C -0.14 -1.05 10.04 -39.55 -0.40 -1.44 16 26 C -0.09 -0.81 10.04 -39.61 -0.40 -1.21 16 27 C -0.13 -1.43 9.66 -39.40 -0.38 -1.81 16 28 C 0.00 0.03 10.86 -16.54 -0.18 -0.15 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 33 H 0.08 1.32 7.24 -51.93 -0.38 0.95 16 34 H 0.03 0.81 8.02 -51.93 -0.42 0.39 16 35 H 0.08 1.96 5.41 -51.93 -0.28 1.68 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.42 5.51 8.31 -40.82 -0.34 5.17 16 38 H 0.22 4.30 5.91 -52.49 -0.31 3.99 16 39 H 0.13 0.95 6.75 -52.49 -0.35 0.60 16 40 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.14 1.67 7.70 -52.48 -0.40 1.27 16 44 H 0.18 1.55 7.06 -52.49 -0.37 1.18 16 LS Contribution 377.36 15.07 5.69 5.69 Total: -1.00 -32.11 377.36 -7.66 -39.77 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -5.35 Total: 7.05 kcal Atomic # 6 Polarization: 11.54 SS G_CDS: -3.68 Total: 7.86 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: 0.57 Total: -55.79 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: 0.14 Total: -21.15 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.11 -7.66 -39.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123942921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.699 kcal (2) G-P(sol) polarization free energy of solvation -32.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds