Wall clock time and date at job start Wed Apr 1 2020 00:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46895 * 2 1 4 4 C 1.50694 * 109.47242 * 120.00518 * 2 1 3 5 5 O 1.20826 * 120.00072 * 88.08977 * 4 2 1 6 6 O 1.34227 * 119.99938 * 268.09026 * 4 2 1 7 7 C 1.45201 * 117.00058 * 185.25515 * 6 4 2 8 8 C 1.52999 * 109.47300 * 176.55223 * 7 6 4 9 9 C 1.50704 * 115.54954 * 64.45538 * 8 7 6 10 10 H 1.07999 * 120.00343 * 269.52195 * 9 8 7 11 11 C 1.37882 * 119.99376 * 89.51456 * 9 8 7 12 12 N 1.31516 * 119.99417 * 180.35180 * 11 9 8 13 13 Si 1.86793 * 120.00359 * 0.35340 * 11 9 8 14 14 H 1.48499 * 109.47156 * 86.19546 * 13 11 9 15 15 H 1.48499 * 109.47179 * 206.19586 * 13 11 9 16 16 H 1.48503 * 109.47175 * 326.19770 * 13 11 9 17 17 C 1.53006 * 117.50223 * 278.78986 * 8 7 6 18 18 C 1.52998 * 117.50158 * 210.12793 * 8 7 6 19 19 N 1.46500 * 109.46918 * 240.00710 * 2 1 3 20 20 N 1.28734 * 125.34144 * 300.01970 * 19 2 1 21 21 N 1.28987 * 108.94264 * 179.70793 * 20 19 2 22 22 C 1.34046 * 107.27010 * 0.43103 * 21 20 19 23 23 C 1.48460 * 126.67596 * 179.83678 * 22 21 20 24 24 C 1.39305 * 120.11332 * 359.68581 * 23 22 21 25 25 C 1.38029 * 119.87911 * 179.97438 * 24 23 22 26 26 C 1.38315 * 120.11465 * 359.97438 * 25 24 23 27 27 C 1.38308 * 120.24090 * 0.28174 * 26 25 24 28 28 C 1.38025 * 120.11721 * 359.48093 * 27 26 25 29 29 N 1.28869 * 125.34313 * 120.00192 * 19 2 1 30 30 H 1.08997 * 109.46835 * 178.12679 * 1 2 3 31 31 H 1.09001 * 109.47006 * 298.12664 * 1 2 3 32 32 H 1.09001 * 109.47206 * 58.12486 * 1 2 3 33 33 H 1.08998 * 109.47230 * 296.55435 * 7 6 4 34 34 H 1.09002 * 109.46762 * 56.55773 * 7 6 4 35 35 H 0.97004 * 119.99827 * 180.02562 * 12 11 9 36 36 H 1.09003 * 117.49520 * 0.02562 * 17 8 7 37 37 H 1.08997 * 117.49992 * 145.01801 * 17 8 7 38 38 H 1.09005 * 117.50003 * 214.97949 * 18 8 7 39 39 H 1.09003 * 117.49866 * 359.97438 * 18 8 7 40 40 H 1.08001 * 120.06245 * 0.02562 * 24 23 22 41 41 H 1.07996 * 119.94120 * 180.02562 * 25 24 23 42 42 H 1.08002 * 119.87868 * 180.02562 * 26 25 24 43 43 H 1.08000 * 119.94583 * 179.74721 * 27 26 25 44 44 H 1.07999 * 120.06429 * 180.25373 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.2009 -1.9068 1.2107 6 8 2.2926 -0.0143 2.3481 7 6 2.8838 -0.7433 3.4560 8 6 3.1853 0.2257 4.6011 9 6 1.9834 0.8800 5.2323 10 1 1.6192 1.8226 4.8512 11 6 1.3487 0.2751 6.2964 12 7 0.2956 0.8426 6.8429 13 14 1.9844 -1.3504 6.9618 14 1 3.0517 -1.0926 7.9616 15 1 0.8704 -2.0909 7.6068 16 1 2.5365 -2.1601 5.8461 17 6 4.4713 1.0496 4.5093 18 6 4.3702 -0.1032 5.5114 19 7 2.0183 -0.6905 -1.1963 20 7 1.7712 -1.9164 -1.5015 21 7 2.3503 -2.1944 -2.6200 22 6 2.9939 -1.0888 -3.0205 23 6 3.8045 -0.9325 -4.2544 24 6 3.9601 -2.0055 -5.1290 25 6 4.7144 -1.8547 -6.2751 26 6 5.3146 -0.6406 -6.5560 27 6 5.1677 0.4264 -5.6884 28 6 4.4116 0.2878 -4.5420 29 7 2.7624 -0.1658 -2.1083 30 1 -0.3633 -1.0271 -0.0336 31 1 -0.3633 0.4845 0.9063 32 1 -0.3634 0.5427 -0.8727 33 1 2.1875 -1.5077 3.8008 34 1 3.8092 -1.2162 3.1272 35 1 -0.1507 0.4173 7.5918 36 1 5.1024 0.9016 3.6330 37 1 4.4482 2.0646 4.9059 38 1 4.2806 0.1540 6.5669 39 1 4.9347 -1.0101 5.2949 40 1 3.4908 -2.9535 -4.9112 41 1 4.8353 -2.6857 -6.9540 42 1 5.9036 -0.5267 -7.4541 43 1 5.6419 1.3710 -5.9104 44 1 4.2940 1.1228 -3.8672 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174743721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:56 Heat of formation + Delta-G solvation = 105.709076 kcal Electronic energy + Delta-G solvation = -28628.082751 eV Core-core repulsion = 24550.328385 eV Total energy + Delta-G solvation = -4077.754366 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.45313 -40.41463 -39.37003 -37.48307 -36.05015 -35.55036 -33.69320 -32.53601 -32.20194 -31.26796 -30.20033 -27.65779 -25.99777 -25.41267 -24.67493 -23.75980 -22.52282 -21.84336 -21.76387 -20.63407 -19.32931 -18.17034 -17.81081 -17.46037 -16.95391 -16.57450 -16.14339 -15.97067 -15.55755 -15.14816 -14.91799 -14.34412 -14.14875 -13.83223 -13.73640 -13.68131 -13.33237 -13.00852 -12.83664 -12.73907 -12.64449 -12.49177 -12.28357 -11.94010 -11.66243 -11.46754 -11.27788 -11.26761 -11.07607 -11.04664 -10.98212 -10.65526 -10.42897 -10.28184 -10.19123 -9.74712 -9.29287 -9.16805 -8.92572 -8.72097 -8.69466 -6.21962 -4.25977 0.49752 1.06321 1.10039 1.37755 2.19082 2.25660 2.71996 3.19844 3.31051 3.32176 3.50734 3.54083 4.01231 4.28488 4.30618 4.41930 4.45335 4.62870 4.73763 4.77183 4.91587 5.03262 5.05860 5.14679 5.23160 5.25805 5.29610 5.47138 5.50600 5.58325 5.70628 5.78024 5.79259 5.81913 5.88087 5.96517 6.06804 6.12664 6.14185 6.17901 6.30359 6.54918 6.56831 6.64309 6.86199 6.95502 7.57002 7.79253 8.20830 8.38397 8.82269 9.39721 10.89523 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.020890 B = 0.002293 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.040584 B =12209.400775 C =12605.117453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.169 3.831 3 H 0.159 0.841 4 C 0.446 3.554 5 O -0.485 6.485 6 O -0.319 6.319 7 C 0.110 3.890 8 C -0.006 4.006 9 C -0.484 4.484 10 H 0.083 0.917 11 C 0.077 3.923 12 N -0.893 5.893 13 Si 0.878 3.122 14 H -0.274 1.274 15 H -0.292 1.292 16 H -0.264 1.264 17 C -0.173 4.173 18 C -0.191 4.191 19 N -0.133 5.133 20 N -0.019 5.019 21 N -0.278 5.278 22 C 0.206 3.794 23 C -0.009 4.009 24 C -0.079 4.079 25 C -0.123 4.123 26 C -0.105 4.105 27 C -0.123 4.123 28 C -0.082 4.082 29 N -0.298 5.298 30 H 0.085 0.915 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.049 0.951 35 H 0.267 0.733 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.075 0.925 40 H 0.136 0.864 41 H 0.130 0.870 42 H 0.126 0.874 43 H 0.129 0.871 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.624 -0.617 -23.403 24.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.067 3.933 3 H 0.176 0.824 4 C 0.285 3.715 5 O -0.372 6.372 6 O -0.233 6.233 7 C 0.036 3.964 8 C -0.007 4.007 9 C -0.521 4.521 10 H 0.101 0.899 11 C -0.126 4.126 12 N -0.529 5.529 13 Si 0.706 3.294 14 H -0.200 1.200 15 H -0.219 1.219 16 H -0.189 1.189 17 C -0.210 4.210 18 C -0.228 4.228 19 N -0.045 5.045 20 N -0.012 5.012 21 N -0.150 5.150 22 C -0.074 4.074 23 C -0.013 4.013 24 C -0.099 4.099 25 C -0.141 4.141 26 C -0.124 4.124 27 C -0.141 4.141 28 C -0.102 4.102 29 N -0.147 5.147 30 H 0.104 0.896 31 H 0.130 0.870 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.094 0.906 40 H 0.154 0.846 41 H 0.147 0.853 42 H 0.144 0.856 43 H 0.147 0.853 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.090 -1.269 -22.623 23.463 hybrid contribution 0.632 -0.809 0.362 1.089 sum 6.722 -2.078 -22.261 23.347 Atomic orbital electron populations 1.22215 0.87732 1.05832 1.06061 1.21245 0.98473 0.97287 0.76292 0.82359 1.22886 0.76401 0.86729 0.85519 1.90761 1.47515 1.15208 1.83708 1.86537 1.72251 1.42794 1.21699 1.23208 0.95751 0.94473 0.82926 1.19338 0.90318 0.97379 0.93713 1.20192 1.09522 1.07932 1.14491 0.89895 1.25009 0.94403 0.97111 0.96054 1.69872 1.19873 1.39303 1.23874 0.86902 0.78318 0.84324 0.79820 1.20037 1.21874 1.18883 1.22866 1.01903 0.96432 0.99794 1.23030 1.03094 0.99085 0.97577 1.49776 1.30676 1.07348 1.16682 1.79124 1.16435 0.97802 1.07850 1.76090 1.10953 1.23462 1.04515 1.23626 1.00325 0.86790 0.96648 1.17282 0.98381 0.95441 0.90156 1.21233 0.97190 0.98323 0.93130 1.21110 0.97901 0.97953 0.97122 1.21335 0.98650 0.93090 0.99280 1.21104 0.99232 0.99396 0.94369 1.21235 0.95438 0.96345 0.97187 1.74870 1.12812 1.26527 1.00471 0.89603 0.87006 0.89615 0.90871 0.93303 0.92352 0.90842 0.88908 0.88487 0.90620 0.84636 0.85255 0.85619 0.85276 0.84858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 9.36 37.16 0.35 -1.33 16 2 C 0.17 2.20 3.74 -69.08 -0.26 1.94 16 3 H 0.16 1.62 8.14 -51.93 -0.42 1.19 16 4 C 0.45 7.67 7.11 36.00 0.26 7.92 16 5 O -0.49 -9.72 15.60 -18.75 -0.29 -10.01 16 6 O -0.32 -6.11 10.15 -39.25 -0.40 -6.51 16 7 C 0.11 2.29 5.04 37.16 0.19 2.48 16 8 C -0.01 -0.14 1.10 -155.66 -0.17 -0.32 16 9 C -0.48 -12.79 9.37 -34.44 -0.32 -13.12 16 10 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 11 C 0.08 2.11 5.47 -17.82 -0.10 2.02 16 12 N -0.89 -25.98 13.96 55.43 0.77 -25.21 16 13 Si 0.88 20.93 24.66 -169.99 -4.19 16.74 16 14 H -0.27 -6.33 6.95 56.52 0.39 -5.94 16 15 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 16 H -0.26 -6.04 6.15 56.52 0.35 -5.69 16 17 C -0.17 -3.33 9.96 -26.69 -0.27 -3.59 16 18 C -0.19 -3.85 7.50 -26.69 -0.20 -4.05 16 19 N -0.13 -1.97 3.67 -5.90 -0.02 -1.99 16 20 N -0.02 -0.31 11.98 60.35 0.72 0.41 16 21 N -0.28 -4.40 12.23 32.16 0.39 -4.01 16 22 C 0.21 2.91 7.94 -156.30 -1.24 1.67 16 23 C -0.01 -0.11 5.88 -104.89 -0.62 -0.72 16 24 C -0.08 -0.76 9.70 -39.26 -0.38 -1.14 16 25 C -0.12 -0.91 10.03 -39.63 -0.40 -1.31 16 26 C -0.10 -0.70 10.04 -39.53 -0.40 -1.10 16 27 C -0.12 -0.91 10.03 -39.63 -0.40 -1.30 16 28 C -0.08 -0.78 9.70 -39.26 -0.38 -1.16 16 29 N -0.30 -4.25 11.85 32.17 0.38 -3.87 16 30 H 0.09 0.98 8.13 -51.93 -0.42 0.56 16 31 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.63 7.09 -51.93 -0.37 1.26 16 34 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 35 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 38 H 0.10 2.04 6.79 -51.93 -0.35 1.68 16 39 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.14 1.28 7.89 -52.49 -0.41 0.87 16 41 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 43 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 44 H 0.13 1.20 7.88 -52.49 -0.41 0.79 16 LS Contribution 381.54 15.07 5.75 5.75 Total: -1.00 -32.55 381.54 -7.03 -39.59 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -5.82 Total: 2.21 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -4.34 Total: -13.11 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 2.25 Total: -34.66 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.69 Total: -16.52 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.19 Total: 16.74 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.55 -7.03 -39.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174743721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.296 kcal (2) G-P(sol) polarization free energy of solvation -32.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds