Wall clock time and date at job start Wed Apr 1 2020 01:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40067 * 126.04195 * 2 1 4 4 C 1.30836 * 108.39075 * 180.22981 * 3 2 1 5 5 C 1.39780 * 108.31913 * 359.77740 * 4 3 2 6 6 C 1.35249 * 126.04263 * 179.83741 * 2 1 3 7 7 N 1.39202 * 126.22212 * 0.04074 * 6 2 1 8 8 C 1.46853 * 111.00153 * 303.66638 * 7 6 2 9 9 C 1.53031 * 109.52369 * 185.83510 * 8 7 6 10 10 C 1.53121 * 109.28252 * 300.82473 * 9 8 7 11 11 C 1.53114 * 109.16118 * 57.65165 * 10 9 8 12 12 H 1.09006 * 109.50275 * 62.33181 * 11 10 9 13 13 N 1.46503 * 109.50316 * 182.40698 * 11 10 9 14 14 S 1.65603 * 119.99701 * 264.99967 * 13 11 10 15 15 O 1.42090 * 104.28138 * 308.92897 * 14 13 11 16 16 O 1.42103 * 104.27241 * 181.06682 * 14 13 11 17 17 C 1.81402 * 104.44809 * 65.00222 * 14 13 11 18 18 C 1.52999 * 109.47096 * 179.97438 * 17 14 13 19 19 C 1.50702 * 109.47522 * 180.02562 * 18 17 14 20 20 H 1.08002 * 119.99446 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00072 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99826 * 179.72119 * 21 19 18 23 23 Si 1.86800 * 120.00406 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46758 * 269.72576 * 23 21 19 25 25 H 1.48499 * 109.47026 * 29.72423 * 23 21 19 26 26 H 1.48496 * 109.47474 * 149.72459 * 23 21 19 27 27 C 1.46855 * 110.99987 * 67.87626 * 7 6 2 28 28 H 1.08996 * 109.47267 * 270.15865 * 1 2 3 29 29 H 1.08998 * 109.46986 * 30.16053 * 1 2 3 30 30 H 1.08997 * 109.47108 * 150.15982 * 1 2 3 31 31 H 1.08001 * 125.84026 * 179.75914 * 4 3 2 32 32 H 1.08005 * 126.08683 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.45652 * 65.82030 * 8 7 6 34 34 H 1.08995 * 109.45104 * 305.85363 * 8 7 6 35 35 H 1.09005 * 109.50561 * 180.87617 * 9 8 7 36 36 H 1.09008 * 109.53230 * 60.78574 * 9 8 7 37 37 H 1.09003 * 109.51771 * 297.74431 * 10 9 8 38 38 H 1.09003 * 109.57194 * 177.59227 * 10 9 8 39 39 H 0.96996 * 120.00059 * 85.00025 * 13 11 10 40 40 H 1.08995 * 109.47513 * 59.99848 * 17 14 13 41 41 H 1.09001 * 109.46953 * 299.99521 * 17 14 13 42 42 H 1.09000 * 109.47527 * 59.99645 * 18 17 14 43 43 H 1.09001 * 109.47054 * 299.99735 * 18 17 14 44 44 H 0.96999 * 120.00128 * 180.27192 * 22 21 19 45 45 H 1.08997 * 109.46021 * 54.14779 * 27 7 6 46 46 H 1.09003 * 109.45974 * 294.17288 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1326 0.0000 4 6 3.5359 0.7358 -0.0050 5 6 3.5522 -0.6619 -0.0032 6 6 2.2608 -1.0936 0.0031 7 7 1.8368 -2.4195 0.0061 8 6 0.9519 -2.6865 1.1472 9 6 0.6236 -4.1802 1.2013 10 6 -0.0580 -4.5957 -0.1053 11 6 0.8641 -4.2626 -1.2813 12 1 1.7877 -4.8349 -1.1929 13 7 0.1955 -4.6044 -2.5392 14 16 0.4724 -6.0736 -3.2515 15 8 1.8886 -6.1742 -3.3083 16 8 -0.3080 -6.0400 -4.4386 17 6 -0.2050 -7.2801 -2.0785 18 6 -0.0081 -8.6936 -2.6300 19 6 -0.5714 -9.6960 -1.6558 20 1 -1.0241 -9.3586 -0.7352 21 6 -0.5078 -11.0437 -1.9395 22 7 -0.9945 -11.9188 -1.0868 23 14 0.2758 -11.6273 -3.5316 24 1 -0.7609 -11.7123 -4.5914 25 1 1.3296 -10.6665 -3.9458 26 1 0.8816 -12.9670 -3.3232 27 6 1.1854 -2.7665 -1.2635 28 1 -0.3633 0.0028 1.0276 29 1 -0.3633 0.8885 -0.5163 30 1 -0.3633 -0.8914 -0.5113 31 1 4.4039 1.3784 -0.0100 32 1 4.4324 -1.2878 -0.0066 33 1 0.0302 -2.1159 1.0332 34 1 1.4504 -2.3904 2.0702 35 1 -0.0456 -4.3757 2.0392 36 1 1.5434 -4.7510 1.3295 37 1 -0.9976 -4.0539 -0.2142 38 1 -0.2555 -5.6676 -0.0893 39 1 -0.4094 -3.9702 -2.9549 40 1 -1.2689 -7.0909 -1.9363 41 1 0.3114 -7.1874 -1.1230 42 1 1.0557 -8.8832 -2.7726 43 1 -0.5248 -8.7861 -3.5853 44 1 -0.9462 -12.8672 -1.2844 45 1 1.8534 -2.5286 -2.0913 46 1 0.2625 -2.1957 -1.3661 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277708432.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:27 Heat of formation + Delta-G solvation = 15.722114 kcal Electronic energy + Delta-G solvation = -28479.501618 eV Core-core repulsion = 24533.289075 eV Total energy + Delta-G solvation = -3946.212542 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.151 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.84931 -39.35269 -36.78740 -35.69862 -35.50133 -34.01846 -33.47054 -32.89057 -31.52946 -29.67287 -28.96092 -27.23273 -26.07957 -24.57507 -23.25359 -21.53806 -21.35656 -20.63120 -20.38656 -19.12372 -17.85372 -17.67040 -17.01985 -16.33231 -15.95190 -15.59838 -15.49776 -15.32425 -15.02327 -14.68626 -14.57265 -14.35632 -14.10358 -13.78750 -13.66694 -13.38166 -13.05889 -12.97449 -12.90976 -12.79707 -11.99124 -11.92455 -11.84368 -11.80819 -11.65940 -11.50691 -11.31380 -11.27568 -11.25655 -11.07223 -10.81992 -10.46008 -10.20027 -9.85528 -9.61535 -9.53856 -9.27495 -9.15198 -8.78343 -8.69194 -6.19666 -4.21147 0.57527 1.45871 2.13084 2.54720 2.79290 3.24422 3.25269 3.32238 3.36227 4.03880 4.07950 4.25544 4.33261 4.39479 4.48163 4.55192 4.64154 4.71124 4.74551 4.86901 4.87864 4.98682 5.12195 5.14748 5.17995 5.26900 5.36754 5.38723 5.42128 5.46878 5.47695 5.57286 5.74994 5.78159 5.88476 6.00681 6.11632 6.25231 6.34306 6.37025 6.76966 6.86282 6.92842 7.06481 7.39461 7.51228 8.32768 8.80910 9.40069 10.92603 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.021835 B = 0.002620 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.014269 B =10686.366172 C =11155.236522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.393 5.393 3 N -0.294 5.294 4 C 0.048 3.952 5 C -0.239 4.239 6 C 0.246 3.754 7 N -0.458 5.458 8 C 0.046 3.954 9 C -0.115 4.115 10 C -0.153 4.153 11 C 0.153 3.847 12 H 0.109 0.891 13 N -1.121 6.121 14 S 2.589 3.411 15 O -0.962 6.962 16 O -0.966 6.966 17 C -0.583 4.583 18 C -0.007 4.007 19 C -0.519 4.519 20 H 0.078 0.922 21 C 0.072 3.928 22 N -0.895 5.895 23 Si 0.869 3.131 24 H -0.272 1.272 25 H -0.261 1.261 26 H -0.282 1.282 27 C 0.052 3.948 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.185 0.815 32 H 0.154 0.846 33 H 0.043 0.957 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.412 0.588 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.033 0.967 43 H 0.028 0.972 44 H 0.267 0.733 45 H 0.092 0.908 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.305 23.991 4.954 24.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.181 5.181 3 N -0.116 5.116 4 C -0.137 4.137 5 C -0.269 4.269 6 C 0.028 3.972 7 N -0.182 5.182 8 C -0.080 4.080 9 C -0.154 4.154 10 C -0.192 4.192 11 C 0.045 3.955 12 H 0.127 0.873 13 N -0.876 5.876 14 S 2.686 3.314 15 O -0.952 6.952 16 O -0.956 6.956 17 C -0.716 4.716 18 C -0.046 4.046 19 C -0.558 4.558 20 H 0.096 0.904 21 C -0.131 4.131 22 N -0.533 5.533 23 Si 0.695 3.305 24 H -0.197 1.197 25 H -0.186 1.186 26 H -0.207 1.207 27 C -0.076 4.076 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.202 0.798 32 H 0.172 0.828 33 H 0.061 0.939 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.245 0.755 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.051 0.949 43 H 0.046 0.954 44 H 0.076 0.924 45 H 0.110 0.890 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.314 24.244 4.249 24.835 hybrid contribution -0.541 -0.486 -0.362 0.812 sum 2.773 23.758 3.888 24.233 Atomic orbital electron populations 1.22105 0.75241 1.04509 1.03379 1.49330 1.06453 1.04560 1.57749 1.77338 1.01978 1.07509 1.24818 1.23772 0.95186 0.94935 0.99819 1.21118 0.95583 0.94674 1.15560 1.19667 0.91472 0.83298 1.02735 1.59625 1.41655 1.13157 1.03792 1.22419 0.94576 0.97948 0.93064 1.21574 1.02063 0.94124 0.97623 1.22368 0.98996 1.03668 0.94147 1.20738 0.96292 0.95632 0.82861 0.87336 1.55820 1.60564 1.35572 1.35673 1.05673 0.75191 0.74588 0.75943 1.93563 1.29508 1.85602 1.86524 1.93566 1.72188 1.85693 1.44180 1.30395 1.12507 1.13251 1.15444 1.19417 0.98399 0.89067 0.97758 1.20822 1.39610 0.89756 1.05625 0.90404 1.24981 0.94656 0.96696 0.96761 1.69877 1.45524 1.02020 1.35877 0.86932 0.80612 0.78807 0.84145 1.19707 1.18574 1.20742 1.22497 0.98156 0.95836 0.91130 0.90641 0.89071 0.89649 0.79764 0.82784 0.93891 0.89729 0.90059 0.89842 0.91125 0.89571 0.75513 0.85431 0.85503 0.94859 0.95395 0.92359 0.88959 0.93580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.57 9.69 59.85 0.58 1.15 16 2 N -0.39 -3.80 4.02 -67.25 -0.27 -4.07 16 3 N -0.29 -3.21 12.56 30.61 0.38 -2.83 16 4 C 0.05 0.44 12.01 -17.40 -0.21 0.23 16 5 C -0.24 -2.32 10.84 -39.75 -0.43 -2.75 16 6 C 0.25 2.45 5.50 -153.41 -0.84 1.61 16 7 N -0.46 -4.17 4.70 -173.27 -0.81 -4.99 16 8 C 0.05 0.35 5.09 -3.83 -0.02 0.33 16 9 C -0.12 -0.87 6.09 -26.65 -0.16 -1.03 16 10 C -0.15 -1.31 5.56 -26.61 -0.15 -1.46 16 11 C 0.15 1.53 2.85 -67.85 -0.19 1.34 16 12 H 0.11 1.24 7.48 -51.93 -0.39 0.85 16 13 N -1.12 -12.34 5.37 -4.82 -0.03 -12.37 16 14 S 2.59 41.26 5.44 -107.50 -0.58 40.67 16 15 O -0.96 -18.18 17.39 -57.54 -1.00 -19.18 16 16 O -0.97 -18.13 18.08 -57.54 -1.04 -19.17 16 17 C -0.58 -9.92 5.22 37.16 0.19 -9.73 16 18 C -0.01 -0.16 4.05 -27.88 -0.11 -0.28 16 19 C -0.52 -14.04 9.66 -34.44 -0.33 -14.37 16 20 H 0.08 2.20 7.99 -52.49 -0.42 1.78 16 21 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 22 N -0.90 -26.55 13.96 55.43 0.77 -25.78 16 23 Si 0.87 21.12 27.47 -169.99 -4.67 16.45 16 24 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 C 0.05 0.47 4.75 -3.83 -0.02 0.45 16 28 H 0.08 0.40 7.88 -51.93 -0.41 -0.01 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.46 4.68 -51.93 -0.24 0.22 16 31 H 0.19 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.15 1.32 8.06 -52.48 -0.42 0.89 16 33 H 0.04 0.27 5.51 -51.93 -0.29 -0.01 16 34 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.09 0.82 5.84 -51.93 -0.30 0.51 16 39 H 0.41 3.62 8.80 -34.47 -0.30 3.31 16 40 H 0.13 1.94 8.14 -51.93 -0.42 1.52 16 41 H 0.13 1.92 6.74 -51.92 -0.35 1.57 16 42 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 43 H 0.03 0.63 7.57 -51.93 -0.39 0.24 16 44 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.09 0.93 8.10 -51.93 -0.42 0.51 16 46 H 0.05 0.34 5.59 -51.93 -0.29 0.05 16 LS Contribution 373.12 15.07 5.62 5.62 Total: -1.00 -35.94 373.12 -10.15 -46.09 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -6.73 Total: 2.13 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: -1.79 Total: -22.57 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: 0.05 Total: -50.04 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -2.04 Total: -38.35 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Atomic # 16 Polarization: 41.26 SS G_CDS: -0.58 Total: 40.67 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.94 -10.15 -46.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277708432.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.810 kcal (2) G-P(sol) polarization free energy of solvation -35.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds