Wall clock time and date at job start Wed Apr 1 2020 01:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40067 * 126.04195 * 2 1 4 4 C 1.30836 * 108.39075 * 180.22981 * 3 2 1 5 5 C 1.39780 * 108.31913 * 359.77740 * 4 3 2 6 6 C 1.35249 * 126.04263 * 179.83741 * 2 1 3 7 7 N 1.39202 * 126.22212 * 0.04074 * 6 2 1 8 8 C 1.46853 * 111.00153 * 303.66638 * 7 6 2 9 9 C 1.53031 * 109.52369 * 185.83510 * 8 7 6 10 10 C 1.53121 * 109.28252 * 300.82473 * 9 8 7 11 11 C 1.53114 * 109.16118 * 57.65165 * 10 9 8 12 12 H 1.09006 * 109.50275 * 62.33181 * 11 10 9 13 13 N 1.46503 * 109.50316 * 182.40698 * 11 10 9 14 14 S 1.65603 * 119.99701 * 264.99967 * 13 11 10 15 15 O 1.42090 * 104.28138 * 308.92897 * 14 13 11 16 16 O 1.42103 * 104.27241 * 181.06682 * 14 13 11 17 17 C 1.81402 * 104.44809 * 65.00222 * 14 13 11 18 18 C 1.52999 * 109.47096 * 179.97438 * 17 14 13 19 19 C 1.50702 * 109.47522 * 180.02562 * 18 17 14 20 20 H 1.08002 * 119.99446 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00072 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99826 * 179.72119 * 21 19 18 23 23 Si 1.86800 * 120.00406 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46758 * 269.72576 * 23 21 19 25 25 H 1.48499 * 109.47026 * 29.72423 * 23 21 19 26 26 H 1.48496 * 109.47474 * 149.72459 * 23 21 19 27 27 C 1.46855 * 110.99987 * 67.87626 * 7 6 2 28 28 H 1.08996 * 109.47267 * 270.15865 * 1 2 3 29 29 H 1.08998 * 109.46986 * 30.16053 * 1 2 3 30 30 H 1.08997 * 109.47108 * 150.15982 * 1 2 3 31 31 H 1.08001 * 125.84026 * 179.75914 * 4 3 2 32 32 H 1.08005 * 126.08683 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.45652 * 65.82030 * 8 7 6 34 34 H 1.08995 * 109.45104 * 305.85363 * 8 7 6 35 35 H 1.09005 * 109.50561 * 180.87617 * 9 8 7 36 36 H 1.09008 * 109.53230 * 60.78574 * 9 8 7 37 37 H 1.09003 * 109.51771 * 297.74431 * 10 9 8 38 38 H 1.09003 * 109.57194 * 177.59227 * 10 9 8 39 39 H 0.96996 * 120.00059 * 85.00025 * 13 11 10 40 40 H 1.08995 * 109.47513 * 59.99848 * 17 14 13 41 41 H 1.09001 * 109.46953 * 299.99521 * 17 14 13 42 42 H 1.09000 * 109.47527 * 59.99645 * 18 17 14 43 43 H 1.09001 * 109.47054 * 299.99735 * 18 17 14 44 44 H 0.96999 * 120.00128 * 180.27192 * 22 21 19 45 45 H 1.08997 * 109.46021 * 54.14779 * 27 7 6 46 46 H 1.09003 * 109.45974 * 294.17288 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1326 0.0000 4 6 3.5359 0.7358 -0.0050 5 6 3.5522 -0.6619 -0.0032 6 6 2.2608 -1.0936 0.0031 7 7 1.8368 -2.4195 0.0061 8 6 0.9519 -2.6865 1.1472 9 6 0.6236 -4.1802 1.2013 10 6 -0.0580 -4.5957 -0.1053 11 6 0.8641 -4.2626 -1.2813 12 1 1.7877 -4.8349 -1.1929 13 7 0.1955 -4.6044 -2.5392 14 16 0.4724 -6.0736 -3.2515 15 8 1.8886 -6.1742 -3.3083 16 8 -0.3080 -6.0400 -4.4386 17 6 -0.2050 -7.2801 -2.0785 18 6 -0.0081 -8.6936 -2.6300 19 6 -0.5714 -9.6960 -1.6558 20 1 -1.0241 -9.3586 -0.7352 21 6 -0.5078 -11.0437 -1.9395 22 7 -0.9945 -11.9188 -1.0868 23 14 0.2758 -11.6273 -3.5316 24 1 -0.7609 -11.7123 -4.5914 25 1 1.3296 -10.6665 -3.9458 26 1 0.8816 -12.9670 -3.3232 27 6 1.1854 -2.7665 -1.2635 28 1 -0.3633 0.0028 1.0276 29 1 -0.3633 0.8885 -0.5163 30 1 -0.3633 -0.8914 -0.5113 31 1 4.4039 1.3784 -0.0100 32 1 4.4324 -1.2878 -0.0066 33 1 0.0302 -2.1159 1.0332 34 1 1.4504 -2.3904 2.0702 35 1 -0.0456 -4.3757 2.0392 36 1 1.5434 -4.7510 1.3295 37 1 -0.9976 -4.0539 -0.2142 38 1 -0.2555 -5.6676 -0.0893 39 1 -0.4094 -3.9702 -2.9549 40 1 -1.2689 -7.0909 -1.9363 41 1 0.3114 -7.1874 -1.1230 42 1 1.0557 -8.8832 -2.7726 43 1 -0.5248 -8.7861 -3.5853 44 1 -0.9462 -12.8672 -1.2844 45 1 1.8534 -2.5286 -2.0913 46 1 0.2625 -2.1957 -1.3661 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277708432.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:26 Heat of formation + Delta-G solvation = -12.203872 kcal Electronic energy + Delta-G solvation = -28480.712579 eV Core-core repulsion = 24533.289075 eV Total energy + Delta-G solvation = -3947.423504 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.151 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.52265 -40.06961 -38.18300 -37.06464 -36.38900 -35.88226 -34.11632 -33.62671 -33.39234 -30.43808 -29.69568 -27.91901 -27.77859 -25.29510 -23.98264 -23.14318 -22.20220 -21.34891 -21.10826 -20.31096 -19.39748 -18.55422 -18.41694 -17.41578 -17.06690 -16.56597 -16.38872 -16.33263 -16.03512 -15.92387 -15.44017 -15.31154 -15.15451 -14.84652 -14.80333 -14.43455 -14.08594 -13.81298 -13.63698 -13.56722 -13.43817 -13.25727 -13.16712 -13.07389 -13.01890 -12.92821 -12.46615 -12.34364 -12.22673 -11.96491 -11.91969 -11.75023 -11.69201 -11.53468 -11.22589 -10.82159 -10.44762 -10.27431 -9.79346 -9.48277 -8.34413 -6.39350 -0.73513 0.75956 1.33000 1.35787 1.45004 1.52189 1.71084 1.87445 2.31106 2.52181 2.75047 3.00009 3.23701 3.49583 3.55347 3.71235 3.85896 3.93462 4.01527 4.05921 4.10637 4.22086 4.26572 4.32199 4.36486 4.51094 4.55625 4.60601 4.62487 4.71869 4.75081 4.78808 4.84733 5.05803 5.08860 5.11968 5.12646 5.25804 5.37020 5.46335 5.49771 5.69771 5.72629 6.08235 6.19173 6.40274 6.66966 6.70879 7.25023 8.80848 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.021835 B = 0.002620 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.014269 B =10686.366172 C =11155.236522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.396 5.396 3 N -0.324 5.324 4 C 0.048 3.952 5 C -0.257 4.257 6 C 0.240 3.760 7 N -0.466 5.466 8 C 0.047 3.953 9 C -0.112 4.112 10 C -0.153 4.153 11 C 0.149 3.851 12 H 0.093 0.907 13 N -1.101 6.101 14 S 2.619 3.381 15 O -0.991 6.991 16 O -0.992 6.992 17 C -0.586 4.586 18 C -0.018 4.018 19 C -0.522 4.522 20 H 0.053 0.947 21 C 0.014 3.986 22 N -0.940 5.940 23 Si 0.921 3.079 24 H -0.262 1.262 25 H -0.249 1.249 26 H -0.276 1.276 27 C 0.056 3.944 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.211 0.789 32 H 0.159 0.841 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.426 0.574 40 H 0.146 0.854 41 H 0.143 0.857 42 H 0.031 0.969 43 H 0.030 0.970 44 H 0.269 0.731 45 H 0.080 0.920 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.077 25.643 4.675 26.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.184 5.184 3 N -0.147 5.147 4 C -0.136 4.136 5 C -0.287 4.287 6 C 0.021 3.979 7 N -0.190 5.190 8 C -0.078 4.078 9 C -0.151 4.151 10 C -0.192 4.192 11 C 0.042 3.958 12 H 0.111 0.889 13 N -0.861 5.861 14 S 2.715 3.285 15 O -0.981 6.981 16 O -0.982 6.982 17 C -0.718 4.718 18 C -0.057 4.057 19 C -0.561 4.561 20 H 0.072 0.928 21 C -0.185 4.185 22 N -0.580 5.580 23 Si 0.744 3.256 24 H -0.187 1.187 25 H -0.173 1.173 26 H -0.201 1.201 27 C -0.072 4.072 28 H 0.107 0.893 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.228 0.772 32 H 0.177 0.823 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.095 0.905 39 H 0.263 0.737 40 H 0.164 0.836 41 H 0.161 0.839 42 H 0.050 0.950 43 H 0.048 0.952 44 H 0.078 0.922 45 H 0.098 0.902 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.069 25.907 3.968 26.388 hybrid contribution -0.488 -0.911 -0.177 1.049 sum 2.581 24.996 3.791 25.413 Atomic orbital electron populations 1.22349 0.73712 1.05368 1.04530 1.49541 1.07421 1.04080 1.57362 1.77289 1.02825 1.08538 1.26075 1.24230 0.95569 0.95149 0.98691 1.21368 0.96013 0.95217 1.16108 1.19797 0.91790 0.83636 1.02662 1.59618 1.42402 1.12820 1.04153 1.22458 0.94999 0.97961 0.92427 1.21567 1.01863 0.94042 0.97619 1.22379 0.99594 1.03429 0.93776 1.20855 0.96075 0.96280 0.82620 0.88882 1.55289 1.60844 1.33867 1.36138 1.04501 0.73968 0.74963 0.75019 1.93530 1.31340 1.86399 1.86850 1.93527 1.72590 1.86389 1.45733 1.30380 1.14332 1.10524 1.16554 1.19383 0.97851 0.91445 0.97055 1.21160 1.38633 0.90796 1.05520 0.92834 1.25835 0.95466 0.97158 1.00016 1.70001 1.47507 1.02454 1.37989 0.86078 0.80308 0.78711 0.80460 1.18690 1.17305 1.20140 1.22407 0.98816 0.95072 0.90928 0.89328 0.88538 0.88476 0.77218 0.82318 0.92202 0.89792 0.88480 0.90919 0.89043 0.90479 0.73694 0.83593 0.83882 0.95044 0.95182 0.92217 0.90171 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 9.69 127.77 1.24 2.08 16 2 N -0.40 -6.99 4.02 -366.67 -1.47 -8.47 16 3 N -0.32 -6.70 12.56 -57.08 -0.72 -7.42 16 4 C 0.05 0.83 12.01 85.21 1.02 1.85 16 5 C -0.26 -4.75 10.84 22.16 0.24 -4.51 16 6 C 0.24 4.42 5.50 131.43 0.72 5.15 16 7 N -0.47 -7.67 4.70 -702.10 -3.30 -10.98 16 8 C 0.05 0.60 5.09 86.32 0.44 1.04 16 9 C -0.11 -1.45 6.09 30.65 0.19 -1.27 16 10 C -0.15 -2.23 5.56 30.67 0.17 -2.06 16 11 C 0.15 2.70 2.85 45.04 0.13 2.83 16 12 H 0.09 2.02 7.48 -2.38 -0.02 2.00 16 13 N -1.10 -21.82 5.37 -169.17 -0.91 -22.73 16 14 S 2.62 79.54 5.44 -56.49 -0.31 79.23 16 15 O -0.99 -36.48 17.39 -127.65 -2.22 -38.70 16 16 O -0.99 -35.65 18.08 -127.65 -2.31 -37.96 16 17 C -0.59 -19.17 5.22 71.98 0.38 -18.80 16 18 C -0.02 -0.82 4.05 29.85 0.12 -0.70 16 19 C -0.52 -28.39 9.66 25.60 0.25 -28.14 16 20 H 0.05 3.08 7.99 -2.91 -0.02 3.06 16 21 C 0.01 0.78 5.47 84.65 0.46 1.24 16 22 N -0.94 -56.65 13.96 21.45 0.30 -56.35 16 23 Si 0.92 43.09 27.47 68.60 1.88 44.97 16 24 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 25 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 26 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 27 C 0.06 0.89 4.75 86.32 0.41 1.30 16 28 H 0.09 0.69 7.88 -2.39 -0.02 0.67 16 29 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.10 0.74 4.68 -2.39 -0.01 0.73 16 31 H 0.21 2.12 8.06 -2.91 -0.02 2.10 16 32 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 33 H 0.06 0.56 5.51 -2.39 -0.01 0.55 16 34 H 0.08 1.10 8.10 -2.39 -0.02 1.08 16 35 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.08 1.30 5.84 -2.39 -0.01 1.28 16 39 H 0.43 6.27 8.80 -96.75 -0.85 5.42 16 40 H 0.15 4.18 8.14 -2.39 -0.02 4.16 16 41 H 0.14 4.16 6.74 -2.39 -0.02 4.14 16 42 H 0.03 1.41 7.20 -2.39 -0.02 1.39 16 43 H 0.03 1.33 7.57 -2.39 -0.02 1.31 16 44 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 45 H 0.08 1.50 8.10 -2.39 -0.02 1.48 16 46 H 0.07 0.78 5.59 -2.39 -0.01 0.77 16 Total: -1.00 -77.50 373.12 -3.19 -80.69 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.10 Total: 17.68 kcal Atomic # 6 Polarization: -45.74 SS G_CDS: 5.77 Total: -39.98 kcal Atomic # 7 Polarization: -99.84 SS G_CDS: -6.10 Total: -105.94 kcal Atomic # 8 Polarization: -72.13 SS G_CDS: -4.53 Total: -76.66 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.88 Total: 44.97 kcal Atomic # 16 Polarization: 79.54 SS G_CDS: -0.31 Total: 79.23 kcal Total: -77.50 -3.19 -80.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277708432.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.486 kcal (2) G-P(sol) polarization free energy of solvation -77.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds