Wall clock time and date at job start Wed Apr 1 2020 01:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40060 * 126.04638 * 2 1 4 4 C 1.30835 * 108.38908 * 180.22688 * 3 2 1 5 5 C 1.39767 * 108.32811 * 359.77919 * 4 3 2 6 6 C 1.35249 * 126.04211 * 179.83631 * 2 1 3 7 7 N 1.39214 * 126.22023 * 0.04533 * 6 2 1 8 8 C 1.46853 * 110.99898 * 303.66496 * 7 6 2 9 9 C 1.53036 * 109.52173 * 174.16076 * 8 7 6 10 10 C 1.53121 * 109.28089 * 59.17987 * 9 8 7 11 11 C 1.53117 * 109.16044 * 302.34451 * 10 9 8 12 12 H 1.09002 * 109.50221 * 297.67761 * 11 10 9 13 13 N 1.46492 * 109.50321 * 177.59317 * 11 10 9 14 14 S 1.65606 * 120.00135 * 95.00070 * 13 11 10 15 15 O 1.42100 * 104.27450 * 308.93172 * 14 13 11 16 16 O 1.42093 * 104.28025 * 181.07088 * 14 13 11 17 17 C 1.81403 * 104.44724 * 64.99830 * 14 13 11 18 18 C 1.53001 * 109.47153 * 180.02562 * 17 14 13 19 19 C 1.50694 * 109.47168 * 180.02562 * 18 17 14 20 20 H 1.08000 * 120.00563 * 0.02562 * 19 18 17 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46985 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47276 * 299.99832 * 23 21 19 26 26 H 1.48498 * 109.47150 * 60.00043 * 23 21 19 27 27 C 1.46851 * 111.00143 * 179.45442 * 7 6 2 28 28 H 1.08989 * 109.47407 * 270.16045 * 1 2 3 29 29 H 1.09003 * 109.46825 * 30.16319 * 1 2 3 30 30 H 1.09003 * 109.46908 * 150.15358 * 1 2 3 31 31 H 1.08004 * 125.83534 * 179.75656 * 4 3 2 32 32 H 1.08002 * 126.09682 * 179.97438 * 5 4 3 33 33 H 1.08995 * 109.46090 * 54.14626 * 8 7 6 34 34 H 1.08993 * 109.45271 * 294.17118 * 8 7 6 35 35 H 1.09004 * 109.50403 * 299.23652 * 9 8 7 36 36 H 1.09001 * 109.53451 * 179.14415 * 9 8 7 37 37 H 1.08999 * 109.51998 * 182.43806 * 10 9 8 38 38 H 1.08997 * 109.52195 * 62.24709 * 10 9 8 39 39 H 0.97001 * 120.00007 * 274.99883 * 13 11 10 40 40 H 1.09002 * 109.46959 * 60.00458 * 17 14 13 41 41 H 1.08998 * 109.47334 * 299.99936 * 17 14 13 42 42 H 1.09007 * 109.46922 * 59.99828 * 18 17 14 43 43 H 1.09003 * 109.46836 * 300.00583 * 18 17 14 44 44 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 45 45 H 1.09001 * 109.45957 * 65.82672 * 27 7 6 46 46 H 1.08995 * 109.46332 * 305.85665 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1324 0.0000 4 6 3.5359 0.7356 -0.0049 5 6 3.5522 -0.6620 -0.0031 6 6 2.2608 -1.0936 0.0031 7 7 1.8366 -2.4196 0.0060 8 6 0.9517 -2.6865 1.1472 9 6 0.3909 -4.1063 1.0383 10 6 1.5493 -5.1075 1.0215 11 6 2.4818 -4.7778 -0.1473 12 1 1.9391 -4.8831 -1.0867 13 7 3.6234 -5.6957 -0.1362 14 16 3.5924 -7.0669 -1.0643 15 8 2.3557 -7.6846 -0.7356 16 8 4.8290 -7.7081 -0.7836 17 6 3.5650 -6.4567 -2.7724 18 6 3.5344 -7.6436 -3.7375 19 6 3.5122 -7.1367 -5.1565 20 1 3.5196 -6.0744 -5.3507 21 6 3.4824 -8.0293 -6.2070 22 7 3.4739 -9.3230 -5.9706 23 14 3.4542 -7.4010 -7.9659 24 1 3.4246 -8.5530 -8.9026 25 1 2.2459 -6.5630 -8.1729 26 1 4.6703 -6.5877 -8.2205 27 6 2.9820 -3.3385 -0.0041 28 1 -0.3633 0.0029 1.0275 29 1 -0.3633 0.8886 -0.5164 30 1 -0.3633 -0.8914 -0.5115 31 1 4.4040 1.3781 -0.0099 32 1 4.4323 -1.2880 -0.0065 33 1 0.1301 -1.9703 1.1449 34 1 1.5159 -2.5891 2.0746 35 1 -0.1849 -4.2005 0.1175 36 1 -0.2539 -4.3100 1.8931 37 1 1.1564 -6.1170 0.9005 38 1 2.1021 -5.0407 1.9585 39 1 4.3975 -5.5003 0.4148 40 1 4.4572 -5.8591 -2.9591 41 1 2.6776 -5.8423 -2.9246 42 1 2.6419 -8.2409 -3.5506 43 1 4.4215 -8.2584 -3.5854 44 1 3.4525 -9.9509 -6.7096 45 1 3.5365 -3.2380 0.9289 46 1 3.6350 -3.0958 -0.8424 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277708434.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:30 Heat of formation + Delta-G solvation = 8.938350 kcal Electronic energy + Delta-G solvation = -28357.010809 eV Core-core repulsion = 24410.504101 eV Total energy + Delta-G solvation = -3946.506708 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.151 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.76064 -39.31248 -36.63749 -35.59174 -35.35186 -33.90840 -33.54575 -33.04422 -31.18104 -29.29264 -28.92979 -27.11254 -25.62395 -24.70879 -23.38448 -21.73783 -21.12121 -20.74975 -20.05968 -18.93956 -17.91916 -17.51666 -16.53474 -16.03776 -15.91972 -15.67973 -15.44972 -15.26830 -14.91411 -14.64357 -14.53730 -14.24460 -14.13635 -13.79234 -13.53715 -13.41035 -13.01754 -12.89977 -12.67850 -12.52652 -11.91524 -11.79368 -11.74308 -11.64286 -11.55553 -11.31656 -11.23239 -11.07048 -11.04015 -10.97541 -10.66528 -10.44385 -10.39024 -10.24428 -9.83509 -9.55256 -9.13469 -9.07566 -8.50674 -8.29290 -6.13165 -4.18760 0.72916 1.60501 2.09116 2.59796 2.96334 3.27239 3.32095 3.33939 3.43531 4.16957 4.28138 4.32408 4.37801 4.45673 4.54255 4.62868 4.69868 4.81342 4.87944 4.89346 5.02081 5.06994 5.16667 5.17639 5.22085 5.30192 5.31337 5.41553 5.48884 5.53208 5.62961 5.67065 5.70384 5.81048 6.04804 6.08121 6.14284 6.42213 6.44718 6.47340 6.99546 6.99891 7.28368 7.34401 7.52525 7.79803 8.16516 8.84498 9.46110 10.97817 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.011101 B = 0.003047 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.768205 B = 9186.623998 C =10584.963068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.377 5.377 3 N -0.301 5.301 4 C 0.064 3.936 5 C -0.316 4.316 6 C 0.278 3.722 7 N -0.470 5.470 8 C 0.047 3.953 9 C -0.117 4.117 10 C -0.143 4.143 11 C 0.158 3.842 12 H 0.097 0.903 13 N -1.122 6.122 14 S 2.592 3.408 15 O -0.963 6.963 16 O -0.966 6.966 17 C -0.590 4.590 18 C 0.029 3.971 19 C -0.521 4.521 20 H 0.061 0.939 21 C 0.058 3.942 22 N -0.891 5.891 23 Si 0.900 3.100 24 H -0.285 1.285 25 H -0.275 1.275 26 H -0.275 1.275 27 C 0.059 3.941 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.183 0.817 32 H 0.148 0.852 33 H 0.082 0.918 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.412 0.588 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.034 0.966 43 H 0.033 0.967 44 H 0.266 0.734 45 H 0.058 0.942 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.788 17.342 16.729 24.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.163 5.163 3 N -0.123 5.123 4 C -0.122 4.122 5 C -0.348 4.348 6 C 0.055 3.945 7 N -0.190 5.190 8 C -0.079 4.079 9 C -0.155 4.155 10 C -0.182 4.182 11 C 0.050 3.950 12 H 0.115 0.885 13 N -0.877 5.877 14 S 2.690 3.310 15 O -0.953 6.953 16 O -0.956 6.956 17 C -0.723 4.723 18 C -0.010 4.010 19 C -0.561 4.561 20 H 0.079 0.921 21 C -0.144 4.144 22 N -0.529 5.529 23 Si 0.727 3.273 24 H -0.211 1.211 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.070 4.070 28 H 0.089 0.911 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.200 0.800 32 H 0.166 0.834 33 H 0.100 0.900 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.245 0.755 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.195 17.097 16.498 24.553 hybrid contribution 1.270 0.383 -0.649 1.477 sum -4.924 17.480 15.849 24.104 Atomic orbital electron populations 1.21919 0.74506 1.04895 1.02900 1.48335 1.06361 1.02565 1.58997 1.77418 1.01797 1.06343 1.26761 1.23646 0.95195 0.94823 0.98554 1.21244 0.95431 0.95564 1.22604 1.19274 0.90272 0.85290 0.99655 1.58403 1.19426 0.98964 1.42252 1.22437 0.96078 0.98992 0.90344 1.21612 0.98069 0.92228 1.03616 1.22200 0.96382 1.01103 0.98519 1.20645 0.86350 0.87639 1.00393 0.88470 1.55913 1.26528 1.43034 1.62242 1.05628 0.74211 0.73444 0.77733 1.93543 1.45649 1.73384 1.82710 1.93558 1.45239 1.72549 1.84301 1.30458 1.10147 1.12192 1.19534 1.18953 0.98876 0.89603 0.93583 1.20966 1.52246 0.93147 0.89693 0.92072 1.25063 0.94878 0.94862 0.99630 1.69944 1.49469 1.01116 1.32338 0.86533 0.78740 0.78339 0.83688 1.21071 1.20069 1.20063 1.22495 0.90707 0.90582 1.03182 0.91100 0.89190 0.88945 0.79990 0.83382 0.90003 0.93302 0.90185 0.90243 0.89093 0.91435 0.75472 0.86012 0.86299 0.94813 0.94857 0.92465 0.92356 0.88478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.68 9.65 59.85 0.58 1.25 16 2 N -0.38 -3.93 4.02 -67.24 -0.27 -4.21 16 3 N -0.30 -3.54 12.56 30.60 0.38 -3.15 16 4 C 0.06 0.64 12.01 -17.40 -0.21 0.43 16 5 C -0.32 -3.20 9.57 -39.75 -0.38 -3.58 16 6 C 0.28 2.90 6.42 -153.40 -0.98 1.91 16 7 N -0.47 -4.34 4.65 -173.26 -0.81 -5.14 16 8 C 0.05 0.35 5.22 -3.83 -0.02 0.33 16 9 C -0.12 -0.88 6.09 -26.65 -0.16 -1.04 16 10 C -0.14 -1.36 5.61 -26.61 -0.15 -1.51 16 11 C 0.16 1.63 2.72 -67.85 -0.18 1.45 16 12 H 0.10 1.06 7.15 -51.93 -0.37 0.69 16 13 N -1.12 -12.85 5.36 -4.83 -0.03 -12.87 16 14 S 2.59 43.37 5.38 -107.50 -0.58 42.79 16 15 O -0.96 -18.62 17.16 -57.54 -0.99 -19.60 16 16 O -0.97 -19.20 18.08 -57.54 -1.04 -20.24 16 17 C -0.59 -10.80 5.90 37.16 0.22 -10.59 16 18 C 0.03 0.72 4.98 -27.89 -0.14 0.58 16 19 C -0.52 -14.24 9.11 -34.44 -0.31 -14.56 16 20 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 22 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 23 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 C 0.06 0.52 3.90 -3.83 -0.01 0.51 16 28 H 0.07 0.36 7.66 -51.94 -0.40 -0.04 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.56 7.55 -51.93 -0.39 0.16 16 31 H 0.18 1.24 8.06 -52.48 -0.42 0.81 16 32 H 0.15 1.27 7.13 -52.49 -0.37 0.89 16 33 H 0.08 0.51 5.10 -51.93 -0.26 0.24 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.09 1.05 7.48 -51.93 -0.39 0.66 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.41 3.80 8.80 -34.47 -0.30 3.49 16 40 H 0.12 2.01 8.14 -51.92 -0.42 1.58 16 41 H 0.12 1.95 7.44 -51.93 -0.39 1.56 16 42 H 0.03 0.89 8.14 -51.92 -0.42 0.47 16 43 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 46 H 0.10 0.87 7.42 -51.93 -0.39 0.48 16 LS Contribution 381.07 15.07 5.74 5.74 Total: -1.00 -36.52 381.07 -10.75 -47.27 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -7.03 Total: 2.14 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: -1.86 Total: -23.26 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: 0.02 Total: -50.93 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -2.03 Total: -39.85 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 43.37 SS G_CDS: -0.58 Total: 42.79 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.52 -10.75 -47.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277708434.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.208 kcal (2) G-P(sol) polarization free energy of solvation -36.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds