Wall clock time and date at job start Wed Apr 1 2020 01:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40060 * 126.04638 * 2 1 4 4 C 1.30835 * 108.38908 * 180.22688 * 3 2 1 5 5 C 1.39767 * 108.32811 * 359.77919 * 4 3 2 6 6 C 1.35249 * 126.04211 * 179.83631 * 2 1 3 7 7 N 1.39214 * 126.22023 * 0.04533 * 6 2 1 8 8 C 1.46853 * 110.99898 * 303.66496 * 7 6 2 9 9 C 1.53036 * 109.52173 * 174.16076 * 8 7 6 10 10 C 1.53121 * 109.28089 * 59.17987 * 9 8 7 11 11 C 1.53117 * 109.16044 * 302.34451 * 10 9 8 12 12 H 1.09002 * 109.50221 * 297.67761 * 11 10 9 13 13 N 1.46492 * 109.50321 * 177.59317 * 11 10 9 14 14 S 1.65606 * 120.00135 * 95.00070 * 13 11 10 15 15 O 1.42100 * 104.27450 * 308.93172 * 14 13 11 16 16 O 1.42093 * 104.28025 * 181.07088 * 14 13 11 17 17 C 1.81403 * 104.44724 * 64.99830 * 14 13 11 18 18 C 1.53001 * 109.47153 * 180.02562 * 17 14 13 19 19 C 1.50694 * 109.47168 * 180.02562 * 18 17 14 20 20 H 1.08000 * 120.00563 * 0.02562 * 19 18 17 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46985 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47276 * 299.99832 * 23 21 19 26 26 H 1.48498 * 109.47150 * 60.00043 * 23 21 19 27 27 C 1.46851 * 111.00143 * 179.45442 * 7 6 2 28 28 H 1.08989 * 109.47407 * 270.16045 * 1 2 3 29 29 H 1.09003 * 109.46825 * 30.16319 * 1 2 3 30 30 H 1.09003 * 109.46908 * 150.15358 * 1 2 3 31 31 H 1.08004 * 125.83534 * 179.75656 * 4 3 2 32 32 H 1.08002 * 126.09682 * 179.97438 * 5 4 3 33 33 H 1.08995 * 109.46090 * 54.14626 * 8 7 6 34 34 H 1.08993 * 109.45271 * 294.17118 * 8 7 6 35 35 H 1.09004 * 109.50403 * 299.23652 * 9 8 7 36 36 H 1.09001 * 109.53451 * 179.14415 * 9 8 7 37 37 H 1.08999 * 109.51998 * 182.43806 * 10 9 8 38 38 H 1.08997 * 109.52195 * 62.24709 * 10 9 8 39 39 H 0.97001 * 120.00007 * 274.99883 * 13 11 10 40 40 H 1.09002 * 109.46959 * 60.00458 * 17 14 13 41 41 H 1.08998 * 109.47334 * 299.99936 * 17 14 13 42 42 H 1.09007 * 109.46922 * 59.99828 * 18 17 14 43 43 H 1.09003 * 109.46836 * 300.00583 * 18 17 14 44 44 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 45 45 H 1.09001 * 109.45957 * 65.82672 * 27 7 6 46 46 H 1.08995 * 109.46332 * 305.85665 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1324 0.0000 4 6 3.5359 0.7356 -0.0049 5 6 3.5522 -0.6620 -0.0031 6 6 2.2608 -1.0936 0.0031 7 7 1.8366 -2.4196 0.0060 8 6 0.9517 -2.6865 1.1472 9 6 0.3909 -4.1063 1.0383 10 6 1.5493 -5.1075 1.0215 11 6 2.4818 -4.7778 -0.1473 12 1 1.9391 -4.8831 -1.0867 13 7 3.6234 -5.6957 -0.1362 14 16 3.5924 -7.0669 -1.0643 15 8 2.3557 -7.6846 -0.7356 16 8 4.8290 -7.7081 -0.7836 17 6 3.5650 -6.4567 -2.7724 18 6 3.5344 -7.6436 -3.7375 19 6 3.5122 -7.1367 -5.1565 20 1 3.5196 -6.0744 -5.3507 21 6 3.4824 -8.0293 -6.2070 22 7 3.4739 -9.3230 -5.9706 23 14 3.4542 -7.4010 -7.9659 24 1 3.4246 -8.5530 -8.9026 25 1 2.2459 -6.5630 -8.1729 26 1 4.6703 -6.5877 -8.2205 27 6 2.9820 -3.3385 -0.0041 28 1 -0.3633 0.0029 1.0275 29 1 -0.3633 0.8886 -0.5164 30 1 -0.3633 -0.8914 -0.5115 31 1 4.4040 1.3781 -0.0099 32 1 4.4323 -1.2880 -0.0065 33 1 0.1301 -1.9703 1.1449 34 1 1.5159 -2.5891 2.0746 35 1 -0.1849 -4.2005 0.1175 36 1 -0.2539 -4.3100 1.8931 37 1 1.1564 -6.1170 0.9005 38 1 2.1021 -5.0407 1.9585 39 1 4.3975 -5.5003 0.4148 40 1 4.4572 -5.8591 -2.9591 41 1 2.6776 -5.8423 -2.9246 42 1 2.6419 -8.2409 -3.5506 43 1 4.4215 -8.2584 -3.5854 44 1 3.4525 -9.9509 -6.7096 45 1 3.5365 -3.2380 0.9289 46 1 3.6350 -3.0958 -0.8424 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277708434.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:29 Heat of formation + Delta-G solvation = -18.838619 kcal Electronic energy + Delta-G solvation = -28358.215309 eV Core-core repulsion = 24410.504101 eV Total energy + Delta-G solvation = -3947.711208 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.151 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.45728 -40.04673 -38.12431 -37.00330 -36.32535 -35.88028 -34.18154 -33.77889 -33.11174 -30.10215 -29.65384 -27.71341 -27.58288 -25.39874 -24.12480 -23.60742 -21.80597 -21.49519 -20.86089 -20.18182 -19.08245 -18.63553 -18.23198 -17.17742 -16.98678 -16.58652 -16.52590 -16.35033 -16.14234 -15.86142 -15.45586 -15.10250 -14.97519 -14.85049 -14.48246 -14.44854 -14.16000 -13.73631 -13.69513 -13.49988 -13.34194 -13.17903 -13.09719 -12.94528 -12.90549 -12.78961 -12.48827 -12.21032 -12.18318 -12.08328 -11.89748 -11.78377 -11.71617 -11.41769 -11.14657 -10.94890 -10.62904 -10.37429 -9.80825 -9.00600 -8.25200 -6.38808 -0.67470 0.89320 1.41313 1.41956 1.44298 1.52438 1.83677 1.89102 2.38562 2.69735 2.83884 3.08296 3.29416 3.57674 3.68754 3.75837 3.88801 3.98086 4.01781 4.09140 4.23073 4.28548 4.36672 4.37665 4.42533 4.53825 4.58184 4.65247 4.66001 4.77488 4.78404 4.82975 4.86474 5.05169 5.08414 5.28438 5.29426 5.30831 5.36550 5.47670 5.69555 5.75066 5.77635 6.07691 6.13773 6.32613 6.74773 6.80966 7.31266 8.86784 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.011101 B = 0.003047 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.768205 B = 9186.623998 C =10584.963068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.384 5.384 3 N -0.334 5.334 4 C 0.058 3.942 5 C -0.329 4.329 6 C 0.271 3.729 7 N -0.475 5.475 8 C 0.048 3.952 9 C -0.111 4.111 10 C -0.144 4.144 11 C 0.152 3.848 12 H 0.091 0.909 13 N -1.099 6.099 14 S 2.624 3.376 15 O -0.989 6.989 16 O -0.998 6.998 17 C -0.591 4.591 18 C 0.021 3.979 19 C -0.540 4.540 20 H 0.074 0.926 21 C -0.002 4.002 22 N -0.934 5.934 23 Si 0.971 3.029 24 H -0.284 1.284 25 H -0.264 1.264 26 H -0.264 1.264 27 C 0.063 3.937 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.207 0.793 32 H 0.161 0.839 33 H 0.095 0.905 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.427 0.573 40 H 0.143 0.857 41 H 0.139 0.861 42 H 0.008 0.992 43 H 0.006 0.994 44 H 0.267 0.733 45 H 0.074 0.926 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.046 19.571 17.222 26.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.170 5.170 3 N -0.156 5.156 4 C -0.127 4.127 5 C -0.361 4.361 6 C 0.047 3.953 7 N -0.195 5.195 8 C -0.077 4.077 9 C -0.149 4.149 10 C -0.184 4.184 11 C 0.044 3.956 12 H 0.109 0.891 13 N -0.860 5.860 14 S 2.720 3.280 15 O -0.979 6.979 16 O -0.988 6.988 17 C -0.723 4.723 18 C -0.018 4.018 19 C -0.578 4.578 20 H 0.093 0.907 21 C -0.201 4.201 22 N -0.573 5.573 23 Si 0.795 3.205 24 H -0.209 1.209 25 H -0.188 1.188 26 H -0.189 1.189 27 C -0.066 4.066 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.223 0.777 32 H 0.178 0.822 33 H 0.114 0.886 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.117 0.883 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.264 0.736 40 H 0.161 0.839 41 H 0.158 0.842 42 H 0.026 0.974 43 H 0.025 0.975 44 H 0.076 0.924 45 H 0.092 0.908 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.452 19.344 16.993 26.544 hybrid contribution 1.318 -0.286 -0.717 1.528 sum -5.134 19.058 16.275 25.582 Atomic orbital electron populations 1.22157 0.73009 1.05445 1.04279 1.48596 1.07359 1.02243 1.58791 1.77364 1.02696 1.07471 1.28104 1.24120 0.95521 0.95377 0.97665 1.21523 0.95934 0.95863 1.22829 1.19455 0.90601 0.85661 0.99599 1.58404 1.19552 0.98473 1.43094 1.22499 0.96256 0.99069 0.89875 1.21591 0.97379 0.91683 1.04276 1.22198 0.97038 1.00497 0.98633 1.20838 0.85826 0.88252 1.00700 0.89109 1.55327 1.27756 1.41947 1.60965 1.04404 0.72822 0.73784 0.77011 1.93511 1.46806 1.74735 1.82854 1.93510 1.46579 1.74151 1.84567 1.30371 1.12267 1.10025 1.19654 1.18802 0.96392 0.91619 0.94958 1.21494 1.51481 0.93914 0.90951 0.90748 1.26084 0.94433 0.94987 1.04594 1.70090 1.50858 1.02601 1.33767 0.85409 0.79419 0.77877 0.77834 1.20949 1.18838 1.18867 1.22432 0.90792 0.89247 1.04109 0.89283 0.88878 0.88204 0.77661 0.82173 0.88638 0.92862 0.90690 0.88344 0.91321 0.90148 0.73625 0.83932 0.84238 0.97378 0.97548 0.92398 0.90792 0.88388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.07 9.65 127.77 1.23 2.31 16 2 N -0.38 -7.36 4.02 -366.65 -1.47 -8.83 16 3 N -0.33 -7.41 12.56 -57.09 -0.72 -8.12 16 4 C 0.06 1.08 12.01 85.21 1.02 2.10 16 5 C -0.33 -6.01 9.57 22.16 0.21 -5.80 16 6 C 0.27 5.07 6.42 131.42 0.84 5.92 16 7 N -0.47 -7.62 4.65 -702.09 -3.26 -10.88 16 8 C 0.05 0.59 5.22 86.32 0.45 1.04 16 9 C -0.11 -1.40 6.09 30.65 0.19 -1.21 16 10 C -0.14 -2.48 5.61 30.67 0.17 -2.31 16 11 C 0.15 2.83 2.72 45.05 0.12 2.95 16 12 H 0.09 1.84 7.15 -2.39 -0.02 1.82 16 13 N -1.10 -23.31 5.36 -169.18 -0.91 -24.22 16 14 S 2.62 87.13 5.38 -56.49 -0.30 86.83 16 15 O -0.99 -38.53 17.16 -127.65 -2.19 -40.72 16 16 O -1.00 -39.73 18.08 -127.65 -2.31 -42.04 16 17 C -0.59 -21.42 5.90 71.98 0.42 -21.00 16 18 C 0.02 1.09 4.98 29.85 0.15 1.24 16 19 C -0.54 -29.66 9.11 25.60 0.23 -29.42 16 20 H 0.07 3.78 7.74 -2.91 -0.02 3.75 16 21 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 22 N -0.93 -56.54 13.29 21.45 0.28 -56.25 16 23 Si 0.97 43.15 29.54 68.60 2.03 45.17 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 25 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 26 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 27 C 0.06 0.96 3.90 86.33 0.34 1.29 16 28 H 0.09 0.70 7.66 -2.39 -0.02 0.68 16 29 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.10 1.00 7.55 -2.39 -0.02 0.98 16 31 H 0.21 2.42 8.06 -2.91 -0.02 2.40 16 32 H 0.16 2.36 7.13 -2.91 -0.02 2.34 16 33 H 0.10 0.91 5.10 -2.39 -0.01 0.89 16 34 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 1.52 7.48 -2.39 -0.02 1.50 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.43 6.88 8.80 -96.74 -0.85 6.02 16 40 H 0.14 4.51 8.14 -2.39 -0.02 4.49 16 41 H 0.14 4.41 7.44 -2.39 -0.02 4.40 16 42 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 43 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 44 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 45 H 0.07 0.92 8.08 -2.39 -0.02 0.90 16 46 H 0.10 1.50 7.42 -2.39 -0.02 1.48 16 Total: -1.00 -79.95 381.07 -2.87 -82.81 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.14 Total: 18.82 kcal Atomic # 6 Polarization: -48.42 SS G_CDS: 5.85 Total: -42.57 kcal Atomic # 7 Polarization: -102.23 SS G_CDS: -6.08 Total: -108.31 kcal Atomic # 8 Polarization: -78.26 SS G_CDS: -4.50 Total: -82.76 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: 87.13 SS G_CDS: -0.30 Total: 86.83 kcal Total: -79.95 -2.87 -82.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277708434.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.976 kcal (2) G-P(sol) polarization free energy of solvation -79.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds