Wall clock time and date at job start Wed Apr 1 2020 00:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 113.99813 * 2 1 4 4 C 1.53005 * 109.47074 * 180.02562 * 3 2 1 5 5 C 1.52992 * 109.46971 * 180.02562 * 4 3 2 6 6 N 1.46499 * 109.47016 * 179.97438 * 5 4 3 7 7 C 1.36761 * 127.14532 * 264.97567 * 6 5 4 8 8 N 1.30297 * 107.31866 * 180.26186 * 7 6 5 9 9 N 1.28530 * 110.07821 * 359.56269 * 8 7 6 10 10 C 1.31278 * 109.85540 * 0.44579 * 9 8 7 11 11 S 1.76204 * 126.48149 * 179.75375 * 10 9 8 12 12 C 1.80991 * 100.00047 * 359.97438 * 11 10 9 13 13 H 1.09003 * 109.47198 * 55.00720 * 12 11 10 14 14 C 1.53000 * 109.47656 * 295.00019 * 12 11 10 15 15 C 1.50702 * 109.47163 * 174.99810 * 12 11 10 16 16 O 1.21287 * 119.99845 * 25.00535 * 15 12 11 17 17 N 1.34780 * 120.00090 * 205.00195 * 15 12 11 18 18 C 1.46499 * 120.00191 * 0.02562 * 17 15 12 19 19 C 1.46498 * 119.99548 * 180.02562 * 17 15 12 20 20 C 1.50706 * 109.47054 * 90.00342 * 19 17 15 21 21 H 1.07991 * 120.00059 * 359.97438 * 20 19 17 22 22 C 1.37877 * 119.99664 * 179.97438 * 20 19 17 23 23 N 1.31513 * 120.00465 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99786 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46774 * 60.00374 * 24 22 20 26 26 H 1.48506 * 109.47264 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47511 * 300.00475 * 24 22 20 28 28 H 1.09004 * 109.47219 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46913 * 299.99840 * 1 2 3 30 30 H 1.08998 * 109.47427 * 59.99986 * 1 2 3 31 31 H 1.08994 * 109.46958 * 59.99976 * 3 2 1 32 32 H 1.08999 * 109.46798 * 299.99621 * 3 2 1 33 33 H 1.08997 * 109.46910 * 59.99553 * 4 3 2 34 34 H 1.09004 * 109.46651 * 299.99801 * 4 3 2 35 35 H 1.08998 * 109.47461 * 59.99507 * 5 4 3 36 36 H 1.09004 * 109.47266 * 299.99418 * 5 4 3 37 37 H 1.08002 * 126.33608 * 359.97438 * 7 6 5 38 38 H 1.08997 * 109.46989 * 300.00009 * 14 12 11 39 39 H 1.08999 * 109.46735 * 60.00076 * 14 12 11 40 40 H 1.08996 * 109.47245 * 180.02562 * 14 12 11 41 41 H 1.09004 * 109.47021 * 89.99627 * 18 17 15 42 42 H 1.08991 * 109.47181 * 210.00119 * 18 17 15 43 43 H 1.08998 * 109.46909 * 330.00168 * 18 17 15 44 44 H 1.09005 * 109.46723 * 209.99834 * 19 17 15 45 45 H 1.08993 * 109.47703 * 329.99993 * 19 17 15 46 46 H 0.97002 * 120.00266 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1577 2.5824 0.0000 6 7 5.6181 2.4668 0.0000 7 6 6.4488 2.4963 1.0860 8 7 7.6681 2.3668 0.6452 9 7 7.6645 2.2491 -0.6347 10 6 6.4325 2.3072 -1.0843 11 16 5.9257 2.1990 -2.7684 12 6 7.5366 2.0015 -3.5693 13 1 8.0588 1.1512 -3.1306 14 6 8.3668 3.2705 -3.3652 15 6 7.3385 1.7627 -5.0441 16 8 6.3331 2.1610 -5.5932 17 7 8.2786 1.1066 -5.7528 18 6 9.4929 0.6251 -5.0894 19 6 8.0862 0.8749 -7.1865 20 6 8.6655 2.0287 -7.9639 21 1 9.1301 2.8523 -7.4423 22 6 8.6023 2.0327 -9.3412 23 7 8.0361 1.0301 -9.9765 24 14 9.3197 3.4632 -10.3049 25 1 10.7709 3.5790 -10.0120 26 1 9.1247 3.2283 -11.7583 27 1 8.6333 4.7196 -9.9105 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.8567 0.6439 -0.8908 34 1 3.8574 0.6437 0.8892 35 1 3.8363 3.1229 0.8904 36 1 3.8358 3.1239 -0.8896 37 1 6.1498 2.6109 2.1175 38 1 7.8446 4.1207 -3.8040 39 1 8.5101 3.4431 -2.2986 40 1 9.3367 3.1517 -3.8480 41 1 9.3273 -0.3863 -4.7181 42 1 10.3182 0.6203 -5.8013 43 1 9.7364 1.2830 -4.2552 44 1 8.5895 -0.0475 -7.4762 45 1 7.0210 0.7905 -7.4012 46 1 7.9913 1.0331 -10.9455 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337447821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:50 Heat of formation + Delta-G solvation = 3.679789 kcal Electronic energy + Delta-G solvation = -27330.304218 eV Core-core repulsion = 23383.569481 eV Total energy + Delta-G solvation = -3946.734736 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.151 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.01397 -39.18948 -38.50594 -36.15523 -34.93404 -33.32448 -32.35322 -32.23828 -30.67161 -27.81290 -27.72056 -26.00911 -25.83295 -24.37641 -23.20368 -22.63130 -22.43335 -21.98362 -18.94990 -18.05776 -16.90099 -16.74679 -16.67167 -16.54308 -16.51629 -16.04779 -15.58992 -15.22818 -15.09564 -14.75633 -14.60599 -14.30162 -13.95301 -13.28864 -13.25912 -12.99121 -12.89758 -12.47441 -12.27326 -12.12874 -12.00326 -11.81559 -11.77239 -11.63800 -11.58486 -11.41500 -11.21051 -10.92078 -10.82889 -10.58891 -10.53516 -10.20919 -10.16631 -10.15358 -10.11180 -9.67631 -9.07426 -8.44736 -7.76339 -7.67424 -6.05916 -4.10948 0.95757 1.45136 1.96181 2.28855 2.67187 3.23282 3.28400 3.32082 3.36212 3.40328 3.85591 4.03531 4.30298 4.43170 4.45368 4.52634 4.57186 4.76517 4.86249 4.87758 4.91593 4.96198 5.00309 5.02758 5.22628 5.26545 5.27315 5.29076 5.48222 5.59953 5.61819 5.74438 5.84265 5.91136 5.95835 6.20103 6.35952 6.46989 6.66722 6.96426 7.38027 7.45244 7.89413 8.19556 8.26964 8.46730 8.79574 8.96522 9.53978 11.02245 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.013226 B = 0.002580 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.563209 B =10848.673668 C =12237.938931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.390 6.390 3 C 0.066 3.934 4 C -0.139 4.139 5 C 0.110 3.890 6 N -0.466 5.466 7 C 0.154 3.846 8 N -0.288 5.288 9 N -0.294 5.294 10 C 0.155 3.845 11 S 0.065 5.935 12 C -0.104 4.104 13 H 0.119 0.881 14 C -0.142 4.142 15 C 0.526 3.474 16 O -0.529 6.529 17 N -0.590 5.590 18 C 0.075 3.925 19 C 0.246 3.754 20 C -0.528 4.528 21 H 0.058 0.942 22 C 0.062 3.938 23 N -0.895 5.895 24 Si 0.899 3.101 25 H -0.276 1.276 26 H -0.286 1.286 27 H -0.276 1.276 28 H 0.088 0.912 29 H 0.041 0.959 30 H 0.044 0.956 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.220 0.780 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.048 0.952 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.036 0.964 45 H 0.046 0.954 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.681 1.132 24.548 26.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.011 4.011 4 C -0.178 4.178 5 C -0.013 4.013 6 N -0.160 5.160 7 C -0.136 4.136 8 N -0.127 5.127 9 N -0.138 5.138 10 C -0.219 4.219 11 S 0.294 5.706 12 C -0.237 4.237 13 H 0.137 0.863 14 C -0.201 4.201 15 C 0.309 3.691 16 O -0.406 6.406 17 N -0.321 5.321 18 C -0.069 4.069 19 C 0.127 3.873 20 C -0.567 4.567 21 H 0.076 0.924 22 C -0.140 4.140 23 N -0.533 5.533 24 Si 0.726 3.274 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.201 1.201 28 H 0.106 0.894 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.236 0.764 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.097 0.903 43 H 0.081 0.919 44 H 0.054 0.946 45 H 0.064 0.936 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.707 1.011 23.564 25.902 hybrid contribution 0.095 0.984 0.144 0.999 sum -10.612 1.995 23.707 26.050 Atomic orbital electron populations 1.22776 0.80495 1.03100 1.00128 1.87890 1.20106 1.27390 1.95451 1.22338 0.92655 0.85368 1.00772 1.21870 0.94247 0.96293 1.05380 1.21822 0.75261 0.98506 1.05761 1.46574 1.08523 1.55183 1.05723 1.26658 0.86611 1.05671 0.94690 1.73931 1.18432 1.16826 1.03465 1.74685 1.15332 1.20703 1.03115 1.27380 0.90482 1.06656 0.97424 1.86090 1.09183 1.90888 0.84479 1.23678 0.97156 1.05005 0.97831 0.86322 1.22018 0.99750 0.94341 1.04021 1.19334 0.84335 0.79467 0.85966 1.90711 1.28566 1.50333 1.70996 1.48061 1.18118 1.54148 1.11822 1.21808 0.88573 0.98428 0.98117 1.19372 0.98860 0.96798 0.72292 1.21374 1.38240 1.05759 0.91307 0.92391 1.24929 0.95293 0.96248 0.97569 1.69920 1.43770 1.30924 1.08720 0.86549 0.79447 0.82706 0.78683 1.20196 1.21161 1.20146 0.89383 0.94034 0.93700 0.92935 0.92458 0.89365 0.90085 0.87794 0.87943 0.76387 0.91187 0.89860 0.90672 0.93330 0.90274 0.91876 0.94601 0.93641 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.43 10.70 -35.23 -0.38 -3.80 16 3 C 0.07 0.41 5.94 37.16 0.22 0.63 16 4 C -0.14 -0.97 5.91 -26.73 -0.16 -1.13 16 5 C 0.11 0.68 6.02 -4.05 -0.02 0.66 16 6 N -0.47 -4.60 2.81 -118.17 -0.33 -4.93 16 7 C 0.15 1.47 12.80 -88.95 -1.14 0.34 16 8 N -0.29 -3.98 12.18 29.90 0.36 -3.61 16 9 N -0.29 -4.43 9.74 30.68 0.30 -4.13 16 10 C 0.16 2.07 7.75 -88.34 -0.68 1.39 16 11 S 0.07 0.96 20.68 -107.50 -2.22 -1.26 16 12 C -0.10 -1.69 1.85 -27.88 -0.05 -1.74 16 13 H 0.12 1.79 6.92 -51.91 -0.36 1.43 16 14 C -0.14 -2.15 8.78 37.16 0.33 -1.83 16 15 C 0.53 10.97 6.79 -10.98 -0.07 10.90 16 16 O -0.53 -13.09 15.72 5.55 0.09 -13.00 16 17 N -0.59 -12.55 2.86 -182.95 -0.52 -13.07 16 18 C 0.07 1.21 9.87 59.85 0.59 1.80 16 19 C 0.25 6.39 5.16 -5.19 -0.03 6.36 16 20 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 21 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 22 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 23 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 24 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.10 0.64 8.02 -51.93 -0.42 0.23 16 37 H 0.22 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.08 1.22 5.91 -51.93 -0.31 0.91 16 40 H 0.07 1.09 6.84 -51.93 -0.36 0.74 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 43 H 0.06 0.88 5.17 -51.93 -0.27 0.61 16 44 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 45 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 46 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 397.57 15.07 5.99 5.99 Total: -1.00 -36.26 397.57 -8.45 -44.71 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -7.13 Total: -3.09 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -0.33 Total: 5.15 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: 0.54 Total: -51.48 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.29 Total: -16.81 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.22 Total: -1.26 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.26 -8.45 -44.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337447821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.390 kcal (2) G-P(sol) polarization free energy of solvation -36.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds