Wall clock time and date at job start Wed Apr 1 2020 00:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47076 * 2 1 4 4 C 1.34112 * 125.69797 * 125.00711 * 3 2 1 5 5 C 1.38621 * 107.34427 * 180.02562 * 4 3 2 6 6 C 1.46925 * 126.49448 * 179.97438 * 5 4 3 7 7 O 1.21419 * 120.00012 * 359.97438 * 6 5 4 8 8 C 1.49305 * 119.99941 * 179.97438 * 6 5 4 9 9 O 1.21366 * 120.00038 * 353.73177 * 8 6 5 10 10 N 1.34779 * 119.99994 * 173.73276 * 8 6 5 11 11 C 1.46495 * 119.99887 * 5.23678 * 10 8 6 12 12 C 1.50703 * 109.46857 * 81.63452 * 11 10 8 13 13 H 1.07996 * 120.00058 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99540 * 179.97438 * 12 11 10 15 15 N 1.31508 * 120.00487 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99516 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47120 * 59.99978 * 16 14 12 18 18 H 1.48498 * 109.47113 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47466 * 299.99698 * 16 14 12 20 20 C 1.46501 * 120.00115 * 185.24058 * 10 8 6 21 21 C 1.50703 * 109.46938 * 270.00098 * 20 10 8 22 22 C 1.38674 * 120.41555 * 269.72099 * 21 20 10 23 23 C 1.38628 * 118.41941 * 179.78669 * 22 21 20 24 24 C 1.38232 * 119.15873 * 0.50735 * 23 22 21 25 25 N 1.31853 * 120.76435 * 359.73035 * 24 23 22 26 26 C 1.31888 * 121.72532 * 0.02562 * 25 24 23 27 27 C 1.41572 * 107.01454 * 0.25852 * 5 4 3 28 28 N 1.30349 * 107.98968 * 359.55442 * 27 5 4 29 29 H 1.08998 * 109.47438 * 59.99912 * 1 2 3 30 30 H 1.08995 * 109.47143 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46809 * 299.99607 * 1 2 3 32 32 H 1.09000 * 109.46809 * 240.00393 * 2 1 3 33 33 H 1.08998 * 109.47438 * 120.00088 * 2 1 3 34 34 H 1.08003 * 126.33381 * 0.02562 * 4 3 2 35 35 H 1.09004 * 109.47215 * 201.63362 * 11 10 8 36 36 H 1.08997 * 109.47417 * 321.63357 * 11 10 8 37 37 H 0.97003 * 119.99909 * 179.97438 * 15 14 12 38 38 H 1.08998 * 109.46890 * 29.99582 * 20 10 8 39 39 H 1.08991 * 109.47051 * 149.99637 * 20 10 8 40 40 H 1.07997 * 120.78843 * 0.02562 * 22 21 20 41 41 H 1.08000 * 120.41962 * 180.22538 * 23 22 21 42 42 H 1.07998 * 119.61580 * 179.75553 * 24 23 22 43 43 H 1.08002 * 119.61609 * 180.02562 * 26 25 24 44 44 H 1.07996 * 126.00562 * 179.70471 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8683 1.9108 0.8921 5 6 3.0703 3.2349 0.5349 6 6 3.9276 4.2059 1.2282 7 8 4.5449 3.8720 2.2191 8 6 4.0399 5.6032 0.7143 9 8 3.5155 5.9070 -0.3372 10 7 4.7235 6.5272 1.4181 11 6 5.4523 6.1355 2.6271 12 6 6.7854 5.5479 2.2417 13 1 7.0620 5.4732 1.2004 14 6 7.6521 5.1055 3.2186 15 7 7.3152 5.1959 4.4866 16 14 9.3043 4.3764 2.7409 17 1 10.0934 5.3872 1.9921 18 1 10.0431 3.9795 3.9664 19 1 9.0895 3.1824 1.8845 20 6 4.7378 7.9233 0.9742 21 6 5.9000 8.1414 0.0399 22 6 7.1336 8.5374 0.5344 23 6 8.1752 8.7217 -0.3616 24 6 7.9484 8.5164 -1.7096 25 7 6.7604 8.1449 -2.1447 26 6 5.7481 7.9555 -1.3208 27 6 2.2887 3.4761 -0.6207 28 7 1.6756 2.3683 -0.9304 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.3132 1.4001 1.7334 35 1 5.6096 7.0115 3.2564 36 1 4.8730 5.3932 3.1761 37 1 7.9248 4.8844 5.1738 38 1 3.8066 8.1488 0.4546 39 1 4.8390 8.5785 1.8393 40 1 7.2803 8.6946 1.5927 41 1 9.1504 9.0262 -0.0113 42 1 8.7535 8.6618 -2.4145 43 1 4.7896 7.6507 -1.7142 44 1 2.2155 4.4126 -1.1535 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340096830.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:37:51 Heat of formation + Delta-G solvation = 64.015664 kcal Electronic energy + Delta-G solvation = -29772.676277 eV Core-core repulsion = 25693.113949 eV Total energy + Delta-G solvation = -4079.562328 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.148 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.18636 -39.99683 -39.23139 -37.43552 -35.40930 -34.47766 -32.81532 -31.94900 -31.14754 -30.44529 -29.70576 -27.54170 -26.57796 -24.77261 -23.63575 -23.14911 -22.67065 -21.96273 -20.72089 -20.29118 -18.59733 -17.05776 -16.80473 -16.53700 -16.23227 -15.86199 -15.65296 -15.44905 -15.08732 -14.65082 -14.50889 -14.42417 -14.04694 -13.82003 -13.60115 -13.17432 -13.05560 -12.74872 -12.60386 -12.55028 -12.38386 -12.26809 -12.25212 -11.92634 -11.69429 -11.51143 -11.13908 -11.06834 -10.88866 -10.65549 -10.38497 -9.93394 -9.74425 -9.44677 -9.31776 -9.05032 -8.76776 -8.56752 -8.47051 -8.22799 -7.80208 -6.07109 -4.08820 1.36180 1.51571 1.77351 2.13805 2.40324 2.96474 3.28700 3.32962 3.37178 3.53121 4.08440 4.27083 4.36708 4.41788 4.69163 4.80952 4.85290 4.92248 4.93724 5.17933 5.23496 5.29093 5.31478 5.33233 5.41639 5.44328 5.52085 5.54735 5.69901 5.73604 5.86149 5.97308 6.04919 6.11168 6.21911 6.57891 6.61769 6.75505 6.77003 6.90027 7.14905 7.27342 7.39796 7.72319 7.84063 7.99831 8.17190 8.18826 8.38415 8.70703 8.94358 9.54274 11.01296 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.009969 B = 0.004038 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.116229 B = 6932.495855 C = 8641.917635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.127 3.873 3 N -0.365 5.365 4 C 0.122 3.878 5 C -0.300 4.300 6 C 0.400 3.600 7 O -0.382 6.382 8 C 0.493 3.507 9 O -0.551 6.551 10 N -0.564 5.564 11 C 0.224 3.776 12 C -0.512 4.512 13 H 0.052 0.948 14 C 0.071 3.929 15 N -0.890 5.890 16 Si 0.887 3.113 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.278 1.278 20 C 0.159 3.841 21 C -0.143 4.143 22 C -0.037 4.037 23 C -0.180 4.180 24 C 0.088 3.912 25 N -0.496 5.496 26 C 0.116 3.884 27 C 0.110 3.890 28 N -0.312 5.312 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.186 0.814 35 H 0.031 0.969 36 H 0.072 0.928 37 H 0.262 0.738 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.137 0.863 41 H 0.128 0.872 42 H 0.147 0.853 43 H 0.157 0.843 44 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.659 -2.666 -5.626 10.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.006 3.994 3 N -0.144 5.144 4 C -0.030 4.030 5 C -0.313 4.313 6 C 0.270 3.730 7 O -0.251 6.251 8 C 0.279 3.721 9 O -0.432 6.432 10 N -0.295 5.295 11 C 0.106 3.894 12 C -0.550 4.550 13 H 0.071 0.929 14 C -0.131 4.131 15 N -0.529 5.529 16 Si 0.715 3.285 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.204 1.204 20 C 0.035 3.965 21 C -0.146 4.146 22 C -0.064 4.064 23 C -0.200 4.200 24 C -0.069 4.069 25 N -0.204 5.204 26 C -0.042 4.042 27 C -0.077 4.077 28 N -0.132 5.132 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.116 0.884 34 H 0.203 0.797 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.154 0.846 41 H 0.146 0.854 42 H 0.164 0.836 43 H 0.174 0.826 44 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -9.500 -3.589 -7.098 12.390 hybrid contribution 2.068 -0.088 1.386 2.491 sum -7.432 -3.678 -5.712 10.070 Atomic orbital electron populations 1.22046 0.93596 1.02811 1.03792 1.21764 0.96272 0.77341 1.04048 1.48588 1.34534 1.10562 1.20753 1.23206 0.91571 0.93848 0.94363 1.20673 1.11576 0.94961 1.04113 1.21280 0.79940 0.87660 0.84116 1.90739 1.34821 1.78801 1.20743 1.20553 0.79579 0.87335 0.84667 1.90516 1.49309 1.80824 1.22518 1.48462 1.46844 1.06460 1.27685 1.20064 0.92111 0.96942 0.80321 1.21175 1.00248 1.40757 0.92856 0.92936 1.24773 0.98070 0.95528 0.94780 1.69899 1.36595 1.47059 0.99304 0.86727 0.84092 0.79873 0.77768 1.20294 1.21225 1.20381 1.20278 0.95780 0.83576 0.96837 1.21183 0.96955 1.00673 0.95816 1.21531 0.91657 0.92818 1.00375 1.22063 1.00037 1.03193 0.94700 1.22632 0.94524 0.95692 0.94015 1.67676 1.00341 1.12485 1.39930 1.22771 0.97710 0.94130 0.89554 1.24700 0.91691 0.97161 0.94163 1.77103 1.25130 0.97334 1.13644 0.90925 0.90716 0.91974 0.89514 0.88438 0.79665 0.95148 0.91110 0.92802 0.89539 0.89528 0.84560 0.85356 0.83592 0.82553 0.77675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 10.09 37.16 0.37 -0.86 16 2 C 0.13 1.05 7.20 -4.04 -0.03 1.02 16 3 N -0.37 -4.74 3.64 -60.68 -0.22 -4.96 16 4 C 0.12 1.73 11.27 -16.41 -0.18 1.55 16 5 C -0.30 -5.15 6.12 -104.97 -0.64 -5.79 16 6 C 0.40 8.01 7.07 -31.46 -0.22 7.79 16 7 O -0.38 -8.68 12.92 5.44 0.07 -8.61 16 8 C 0.49 9.93 7.60 -11.65 -0.09 9.84 16 9 O -0.55 -10.72 13.15 5.48 0.07 -10.65 16 10 N -0.56 -11.38 2.47 -177.00 -0.44 -11.82 16 11 C 0.22 5.27 4.83 -5.20 -0.03 5.24 16 12 C -0.51 -13.32 8.26 -34.44 -0.28 -13.60 16 13 H 0.05 1.45 7.81 -52.49 -0.41 1.04 16 14 C 0.07 1.90 5.46 -17.82 -0.10 1.81 16 15 N -0.89 -24.76 13.29 55.43 0.74 -24.02 16 16 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 C 0.16 2.68 5.56 -5.19 -0.03 2.65 16 21 C -0.14 -2.51 5.48 -104.48 -0.57 -3.08 16 22 C -0.04 -0.64 9.86 -39.28 -0.39 -1.03 16 23 C -0.18 -2.83 10.11 -39.44 -0.40 -3.23 16 24 C 0.09 1.40 11.18 -17.54 -0.20 1.20 16 25 N -0.50 -8.89 10.36 -13.25 -0.14 -9.03 16 26 C 0.12 2.06 10.75 -17.55 -0.19 1.87 16 27 C 0.11 1.79 11.13 -16.91 -0.19 1.60 16 28 N -0.31 -4.78 12.31 30.91 0.38 -4.40 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.10 0.57 8.06 -51.93 -0.42 0.15 16 34 H 0.19 2.20 8.06 -52.48 -0.42 1.78 16 35 H 0.03 0.73 7.81 -51.93 -0.41 0.32 16 36 H 0.07 1.81 5.44 -51.93 -0.28 1.53 16 37 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.09 1.33 7.45 -51.93 -0.39 0.94 16 39 H 0.09 1.31 7.80 -51.93 -0.40 0.90 16 40 H 0.14 2.29 8.06 -52.49 -0.42 1.86 16 41 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 42 H 0.15 1.85 8.06 -52.49 -0.42 1.42 16 43 H 0.16 2.72 7.40 -52.49 -0.39 2.33 16 44 H 0.21 3.26 6.29 -52.49 -0.33 2.93 16 LS Contribution 382.14 15.07 5.76 5.76 Total: -1.00 -32.24 382.14 -7.50 -39.74 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -5.54 Total: 4.73 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -3.16 Total: 6.99 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: 0.32 Total: -54.22 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: 0.14 Total: -19.26 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.24 -7.50 -39.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340096830.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.756 kcal (2) G-P(sol) polarization free energy of solvation -32.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds